BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481234
Length=2467
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23700.1 | Symbols: | Protein of unknown function, DUF547 |... 3186 0.0
> AT2G23700.1 | Symbols: | Protein of unknown function, DUF547
| chr2:10076369-10080232 REVERSE LENGTH=2762
Length=2762
Score = 3186 bits (1725), Expect = 0.0
Identities = 2011/2148 (94%), Gaps = 24/2148 (1%)
Strand=Plus/Plus
Query 329 TTCTTAGAGATGGGATTTGAAGACAAGAAAATGCAGAGACAGAGACATAAGCGTTCAAAG 388
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 375 TTCTTAGAGATGGGATTTGAAGACAAGAAAATGCTGAGACAGAGACATAAGCGTTCTAAG 434
Query 389 AGTTGTACTGTGT-TTGAAAAGAAAAAGCTTGAAGATGAGAATAGCATTGATTCTTCTCT 447
|| |||||||| | ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 435 AGCTGTACTGT-TCCTGAGAAGAAAAAGCTTGAAGATGAGAATAGCATTGATTCTTCTCT 493
Query 448 GGATGCTTCTCAACGCCTCAAGCTCGACTTACCTCGTTGTTGCGATAAATCTGTTGAAAC 507
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 494 GGATGCTTCTCAACGCCTCAAGCTCGACTTACCTCGTTGCGGCGATAAATCTTTTGAAAT 553
Query 508 AAAGAAGGATCTGTCCCCTGATGTAAAATTCAAGAGCTCTCTGAAGCAAGAGATTCAAGA 567
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 GAAGAAGGATCTATCCCCTGATGTAAAATTCAAGAGCTCTCTGAAGCAAGAGATTCAAGA 613
Query 568 GCTTGAGAAAAGATTACAGAACCAGTTCGATGTCCGGGGTGCGTTAGAGAAGGCATTAGG 627
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 614 GCTTGAGAAAAGATTACAGAACCAGTTTGATGTCCGTGGTGCGTTAGAGAAGGCATTAGG 673
Query 628 CTATAAAACGCCTTCTCAAGACATCAAAGCCGACTATACTCCAAAGCCTCCAACAGAATT 687
||||||||| || |||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 674 CTATAAAACACCATCTCGAGACATCAAAGGCGACTCTACTCCAAAGCCTCCAACAGAATT 733
Query 688 GATCAAGGAAATCGCGGTGTTAGAGTTGGAAGTTTCACATTTGGAACAGTACCTTCTATC 747
||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct 734 GATCAAGGAAATCGCGGTGTTGGAGTTAGAAGTTTCTCATTTGGAACAGTACCTTCTATC 793
Query 748 TTTGTATCGTAAAGCATTTGATCAACAAACATCTTCTGTATCGCCACCAACATCGAAACA 807
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 TTTGTATCGTAAAGCGTTTGATCAACAAACATCTTCTGTATCGCCACCAACATCGAAACA 853
Query 808 ACAGAGCTCGAGTTCACCTAAATCTACTCTCAGAGGAAAACGTCTAGACTTTTCAAAAAC 867
||| |||||| ||||||||||||||||||| |||||||||||||||||||| |||| |||
Sbjct 854 ACAAAGCTCGTGTTCACCTAAATCTACTCTTAGAGGAAAACGTCTAGACTTCTCAAGAAC 913
Query 868 ACCTGAAACTCGGTGTTTCTCATTTGACAACAGACTGAAGAGTCCACGTTTGGTGGAGAA 927
||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 914 ACCTGAATCTCGGTGTTTCTCCTTTGACAACAGACTGAAGAGTCCACGTTTGGTAGAGAA 973
Query 928 GGAGCTAGATTCTCCTAACCTTAGATGCAGACAAGAAAGCTTAGCCACGCAACCTCGATG 987
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 974 GGAGCTAGAGTCTCCTAACCTTAGATGTAGACAAGAAAGCTTAGCCACGCAACCTCGATG 1033
Query 988 TTTCTCATTTGACAATAGACTGAAGGAACCTGGTTCTGCTGGTCGACAAT-TCAATCAAG 1046
||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||
Sbjct 1034 TTTCTCATTTGACAATAGACTGAAGGAACCTAGTTCTGCTGGTCGACAATGT-AATCAAG 1092
Query 1047 AAGACGCAAGAATCAATTCTCAGTGTTTCTCCTTTGACAATAGAGTGAAGGAACCCGTTT 1106
||| | |||||||| |||||| | ||||||||||||||||||||||||||||||||| ||
Sbjct 1093 AAGTCTCAAGAATCGATTCTCGGAGTTTCTCCTTTGACAATAGAGTGAAGGAACCCGGTT 1152
Query 1107 CTGCTGCTCGACAATTCAATCAAGAA-AGCTCATTATTTGATTCTCAGAGTTTCTCCGCT 1165
|||||||||| || |||||||||||| | |||| | | ||||||||| || ||||| |
Sbjct 1153 CTGCTGCTCGGCATTTCAATCAAGAAGA-CTCAAGAATCGATTCTCAGTGTGTCTCCTTT 1211
Query 1166 GACAATAGACTGAAGGAACCCGGTTCTACTGCTGCTCGGCAATTC-ATTCAAGAAAACTC 1224
||||||||| |||||||||||| || | ||| || ||| |||||| || ||||||| |||
Sbjct 1212 GACAATAGAGTGAAGGAACCCG-TT-T-CTGGTGTTCGACAATTCGAT-CAAGAAAGCTC 1267
Query 1225 AACAATTGATTCTAGGTGTTTCTCTTTTGACAATAGACTGAAAGATCAATGTTTTATGGA 1284
|| ||| |||||| ||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1268 AAGAATCGATTCTCGGTGTTTCTCTTTCGACAATAGACTGAAAGATCAATGTTTTATCGA 1327
Query 1285 GAAGGAGGACATCGGTTCTTGTGTTCGTCGTTGCCAGTCCTCTCTTAATCAACGTTCCAC 1344
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1328 GAAGGAGGACATCGATTCATGTGTTCGTCGTTGCCAGTCCTCTCTTAATCAACGTTCCAC 1387
Query 1345 CTTCAATAACCGAATATCTCCACCAGAAGACTCGGTATTCACGTGCCACTCCCAACCATT 1404
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1388 CTTCAATAACCGAATATCTCCACCAGAAGACTCGGTATTCGCGTGCCACTCCCAACCATT 1447
Query 1405 GTCTATACA-GAAATACATACAAAATGGATCAAATGCTGCAAGCCTTGCAGAACACATGG 1463
||| ||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1448 GTCCATACATGAA-TACATACAAAATGGATCAAATGATGCAAGCCTTGCAGAACACATGG 1506
Query 1464 GAACTCGAATATCCGATCACATATTTATGACTCCTAACAAGTTATCAGAGGAGATGATAA 1523
||||||| ||||| ||||||||||| |||||||| ||||||||||||||||| ||||| |
Sbjct 1507 GAACTCGGATATCTGATCACATATTCATGACTCCAAACAAGTTATCAGAGGAAATGATCA 1566
Query 1524 AATGTGTATCGGCTATATACTCCAAGCTAGCTGATCCACCATCGATAAACCACGGTTTCT 1583
| |||| ||| |||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1567 AGTGTGCATCAGCTATATATTCCAAGCTCGCTGATCCACCATCGATAAACCACGGTTTCT 1626
Query 1584 CATCCCCAAGTTCATCTCCATCATCAGCAAGCGAGTTTTCGCCTCAAGACCAGTATGATA 1643
||||||| ||||| |||||||||||| ||||||||||||| || ||||||||||||||||
Sbjct 1627 CATCCCCGAGTTCGTCTCCATCATCAACAAGCGAGTTTTCACCACAAGACCAGTATGATA 1686
Query 1644 TGTGGAGTCCAAGCTTCAGAAAAAACTCGTCTTTCGATGACCAATTTGAATTCAGTGGAC 1703
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1687 TGTGGAGTCCAAGCTTCAGAAAAAACTCGTCTTTCGATGACCAGTTTGAATTCAGCGGAC 1746
Query 1704 CTTACAGCTCAATGATTGAAGTGTCACACATTCATCGAAACCATAGGAAAGGACGCGACC 1763
|||| ||||||||||| ||||||||||||||||||||||||| || |||| ||||||||
Sbjct 1747 CTTATAGCTCAATGATCGAAGTGTCACACATTCATCGAAACCGTA--AAAG-ACGCGACC 1803
Query 1764 TTGACCTGATGAATCAAAACTTCAGCTTGCTTATTAAGCAACTGGAAAGTGTTGATCCAA 1823
||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||| |
Sbjct 1804 TTGACCTGATGAATCGAAACTTCAGCTTACTTCTTAAGCAACTGGAAAGTGTTGATCCGA 1863
Query 1824 GAAAGCTGACTCATCAAGAGAAACTGGCGTTCTGGATTAACGTACATAACGCGCTTGTGA 1883
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1864 GAAAACTGACTCATCAAGAGAAACTGGCGTTCTGGATTAACGTACATAACGCTCTTGTGA 1923
Query 1884 TGCATACATTTCTGGCAAGTGGGATTCCACAGAACAATGGGAAGCGGTTTTTACTACTCT 1943
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 1924 TGCATACATTTCTGGCAAATGGGATTCCACAGAACAATGGGAAGCGATTTTTACTACTCT 1983
Query 1944 CCAAGCCAGCTTACCAGATAGGAGGTCGCATGGTAAGCGTAGAAGCGATAGAAAATTATA 2003
|||||||||||||| ||||||||||||||||||||||| ||||||| ||| ||| |||||
Sbjct 1984 CCAAGCCAGCTTACAAGATAGGAGGTCGCATGGTAAGCTTAGAAGCAATACAAAGTTATA 2043
Query 2004 TTCTTCGTATCAAGATGCCTCGTCCTGGCCAGTGGCTGAAGTTATTACTCATTCC-AAAA 2062
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 2044 TTCTTCGTATCAAGATGCCTCGTCCTGGCCAGTGGCTGAAGTTATTACTCATACCTAAAA 2103
Query 2063 AAGTTAAGAACCGGAGACGTAA-ATCAAGAATATTCCCTCGAACATTCGGAGCCTCTCTT 2121
|| || ||||||||||| | || ||||||||||||||||||| ||||| |||||||||||
Sbjct 2104 AA-TTCAGAACCGGAGATG-AACATCAAGAATATTCCCTCGAGCATTCCGAGCCTCTCTT 2161
Query 2122 ATACTTTGCCCTTTGTTCAGGCAACCATTCTGACCCTGCGATTCGTGTTTATACGCCCAA 2181
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2162 ATACTTTGCACTTTGTTCAGGCAACCATTCTGACCCTGCGATTCGTGTTTTTACGCCCAA 2221
Query 2182 GGGAATATACCAAGAGCTAGAAACCGCAAAGGAAGAGTACATTCGCGCAACGTTTGGGGT 2241
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 2222 GGGAATATACCAAGAGCTAGAAACCGCAAAGGAAGAGTACATCCGCGCAACGTTTGGAGT 2281
Query 2242 TAA-AAAGGACCAGAAACTAGTCTTACCAAAGATCATTGAGTCTTTTAGCAAAGACTCAG 2300
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2282 AAAGAAAG-ACCAGAAACTAGTCTTACCAAAGATCATTGAGTCTTTTAGCAAAGACTCAG 2340
Query 2301 GTTTGAG-TCAAGCAGCATTGATGGAGATGATTCAAGAATGTCTCCCGGAGACAATGAAG 2359
|||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2341 GTTT-AGGTCAAGCAGCATTGATGGAGATGATTCAAGAATGTCTCCCGGAAACAATGAAA 2399
Query 2360 AAAACCATAAAGAAACTTAACTCGGGGAGATCCCGAAAGAGCATTGTTGAATGGACGCCT 2419
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 2400 AAAACCATAAAGAAACTTAACTCAGGGAGATCCCGAAAGAGCATTGTCGAATGGACGCCT 2459
Query 2420 CATAGTTTCGTGTTTCGGTATTTGATAGCCAGAGAACTTGTTAGATGA 2467
|||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2460 CATAATTTCGTGTTTCGGTATTTGATAGCCAGAGAACTTGTTAGATGA 2507
Score = 411 bits (222), Expect = 2e-113
Identities = 279/305 (91%), Gaps = 10/305 (3%)
Strand=Plus/Plus
Query 31 ACATCAAATCTTTGCTACATGTCTTTGGTCGTATCCGTATATATGTTCTTCTTCTTCTTA 90
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 44 ACATCAAATCTTTGCTACATGTCTTTGGTCGTATCCGTATATATGTTCTTCTTCTAATTA 103
Query 91 TTATAGCAGAAAGaaaaaaaaaaTAATCGCTTTCATAAACTCAAGATTTGTTTTTT---- 146
|| |||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 104 TTTTAGCAGAAAGAAAAAAAAC-TAATCGCTTTCATAAACTCA-GATTTGTTTTTTTTTT 161
Query 147 -CAATGGTGGAAGAAGACAAGTTTTCTTGGAGTTTAGTTTCTTCTTATGATTCATTCATA 205
||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 162 TCAATGGTAGAAGAAGACAAGTGTTCTTGGAGTTTAGTTTCTTCTTATGATTCATTCATA 221
Query 206 AATCTGAGGAAATTTCTCAAATCTGTTTCTTTCTCTTTCTCTGAAGTCAAAACCCAACTA 265
|||| |||||||| | |||||||||||||||||| || |||| |||||||||||||||||
Sbjct 222 AATCCGAGGAAATATATCAAATCTGTTTCTTTCT-TT-CTCT-AAGTCAAAACCCAACTA 278
Query 266 AGAGATTCTTCTGGTTCTCTGTTTGAGATCAGTTACAATTTGAGCTTTGTTTCTAAGTTC 325
|||||||||||| |||| | ||||||||||||||||| |||||||||||| |||||||
Sbjct 279 AGAGATTCTTCTTCTTCTTTCTTTGAGATCAGTTACAAAGTGAGCTTTGTTTTTAAGTTC 338
Query 326 TAATT 330
|||||
Sbjct 339 TAATT 343
Score = 235 bits (127), Expect = 1e-60
Identities = 172/194 (89%), Gaps = 2/194 (1%)
Strand=Plus/Plus
Query 987 GTTTCTCATTTGACAATAGACTGAAGGAACCTGGTTCTGCTGGTCGACAATTCAATCAAG 1046
||||||| |||||||||||| |||||||||| |||||||||| ||| || ||||||||||
Sbjct 1117 GTTTCTCCTTTGACAATAGAGTGAAGGAACCCGGTTCTGCTGCTCGGCATTTCAATCAAG 1176
Query 1047 AAGACGCAAGAATCAATTCTCAGTGTTTCTCCTTTGACAATAGAGTGAAGGAACCCGTTT 1106
||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1177 AAGACTCAAGAATCGATTCTCAGTGTGTCTCCTTTGACAATAGAGTGAAGGAACCCGTTT 1236
Query 1107 CTGCTGCTCGACAATTCAATCAAGAAAGCTCATTATTTGATTCTCAGAGTTTCTCCG-CT 1165
||| || |||||||||| |||||||||||||| | | ||||||| | ||||||| |
Sbjct 1237 CTGGTGTTCGACAATTCGATCAAGAAAGCTCAAGAATCGATTCTCGGTGTTTCTCTTTC- 1295
Query 1166 GACAATAGACTGAA 1179
||||||||||||||
Sbjct 1296 GACAATAGACTGAA 1309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122407340920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5