BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481239
Length=1836
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23770.1 | Symbols: | protein kinase family protein / pepti... 2543 0.0
> AT2G23770.1 | Symbols: | protein kinase family protein / peptidoglycan-binding
LysM domain-containing protein | chr2:10120242-10122080
REVERSE LENGTH=1839
Length=1839
Score = 2543 bits (1377), Expect = 0.0
Identities = 1676/1818 (92%), Gaps = 29/1818 (2%)
Strand=Plus/Plus
Query 32 TCCTATGTTTCTCCTCTTTCGCAACCGCGCAACAGCCTTATGTCGGGGTATCGACAACCG 91
||||| || |||| || |||||||| || ||||||||||||||||| |||| ||||| |
Sbjct 38 TCCTAAGTCTCTCTTCCTTCGCAACAGCACAACAGCCTTATGTCGGAATATCAACAACTG 97
Query 92 ATTGCTCTGTTTCCGACAACTCAACTTCTGTTTTCGGCTACTCTTGTAACGGTCTCAACA 151
|||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||
Sbjct 98 ATTGCTCTGTTTCCGACAACACAACCTCTGTTTTCGGCTACTCTTGTAATGGTCTCAACA 157
Query 152 AAACTTGCCAAGCTTATGTCATTTTCCGAtctactcctcctttctctaccgtctcctcca 211
|||||||||||||||| ||||||||||||||||||||| ||||||| |||||| |||| |
Sbjct 158 AAACTTGCCAAGCTTACGTCATTTTCCGATCTACTCCTTCTTTCTCCACCGTCACCTCAA 217
Query 212 tctcttccctcttctccgtcgacccatctctcctctcctccctcAATGCCGCCTCAACTT 271
|||||||||||||||| ||||||||||||||| ||||||||||||||| ||| ||| |||
Sbjct 218 TCTCTTCCCTCTTCTCTGTCGACCCATCTCTCGTCTCCTCCCTCAATGACGCTTCACCTT 277
Query 272 CAACTTCATTCCCTTCCGGTCAACAAGTCATTATCCCTTTAACTTGTTCTTGCTTCGGCG 331
||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||| |
Sbjct 278 CAACTTCTTTCCCTTCTGGTCAACAAGTCATTATCCCTTTAACTTGTTCTTGCACCGGTG 337
Query 332 ACAATTCACAAGCCAATCTCACCTACACAATCCAACCAAACGATTCGTATTTCGCCATTG 391
|| |||||||| ||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct 338 ACGATTCACAATCCAATATTACATACACAATCCAACCAAACGATTCGTATTTCGCCATTG 397
Query 392 CTAACGACACTCTTCAGGGGCTTTCGACGTGTCAAGCTTTGG-AGAAACAGAACAATGTT 450
|||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||
Sbjct 398 CTAACGACACTCTTCAGGGGCTTTCGACATGTCAAGCTTTGGCA-AAACAGAACAATGTT 456
Query 451 TCTTCTCAATCTTTGTTACCTGGTATGAGGATCGTTGTTCCGATCCGTTGCGCGTGTCCC 510
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 457 TCTTCTCAATCTTTGTTTCCTGGTATGAGGATCGTTGTTCCGATCCGTTGTGCGTGTCCC 516
Query 511 ACGGCTAAACAGGTCAACGAAGATGGGGTGAAGTATCTGATGAGCTATACGGTGGTTTTC 570
|||||||||||| ||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 517 ACGGCTAAACAGATCAACGAAGATGGCGTGAAGTATCTGATGAGTTATACTGTGGTTTTT 576
Query 571 GATGACACTGTCGCGATCATCAGCGAGAGATTTGGGGTCGAGACGAGCAAGACTTTAGAA 630
|| |||||| |||||||||||||||| ||||| ||||| |||||||||||||||||| ||
Sbjct 577 GAAGACACTATCGCGATCATCAGCGATAGATTCGGGGTTGAGACGAGCAAGACTTTAAAA 636
Query 631 GCTAACGAAATGTCTTTTGAAAATTCTGAAGTTTTCCCTTTCACCACAATTCTGATTCCT 690
|||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||
Sbjct 637 GCTAACGAAATGTCTTTTGAGAATTCTGAAGTTTTCCCTTTCACAACAATCCTGATCCCT 696
Query 691 TTGTTGAATCCTCCTTCGAATTCCAACTCTATCATtcctcctcctccccctccccctcct 750
||| ||||||||||| | ||| | |||||| ||| | ||||||| ||| ||||||
Sbjct 697 TTGGTGAATCCTCCTGCAAATACTAACTCTCTCA-T--TCCTCCT---CCT---CCTCCT 747
Query 751 cctcctccGCCACAATCGG-TT-T-CTCCTCCATTGTCGCCGAATGGTAGGAAATCAAAG 807
|||||| |||||||||| || | ||||||||||||||||| ||||||||||||| |||
Sbjct 748 CCTCCT---CCACAATCGGTTTCTCCTCCTCCATTGTCGCCGGATGGTAGGAAATCGAAG 804
Query 808 AAGAAAACATGGGTCTATGTTCTTGCCGGAGTACTAGGAGGAGCATTGGTTTTGAGTGTG 867
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 805 AAGAAAACATGGGTCTATGCTCTTGCCGGAGTACTAGGAGGAGCATTGGTTTTGAGTGTG 864
Query 868 ATTGGTGCAGCCATCTTTTGCCTTG-GTAAGAAGAAAACG-AAAC-C--A--CAAGAGGA 920
|| ||||||||||| ||||||| || ||||||||||||| |||| | | ||||||||
Sbjct 865 ATCGGTGCAGCCATATTTTGCC-TGTCTAAGAAGAAAACGAAAACGCAAACGCAAGAGGA 923
Query 921 AAGGGGAAACCTCGATAGCTTCACGGGCAAGAAACCACCGATGTCCGATCAAGAATTCGA 980
|| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 924 AACGGGAAACCTCGATAGCTTCATGGGCAAGAAACCACCGATGTCTGATCAAGAATTCGA 983
Query 981 TCCACTAGATGGTTTATCAGGGATGGTGGTAGAATCAC-TAAAAGTTTACAAATTTCACG 1039
||| ||||||||||| ||||| |||||||||||||| | |||||||||||||||||||||
Sbjct 984 TCCGCTAGATGGTTTGTCAGGTATGGTGGTAGAATC-CTTAAAAGTTTACAAATTTCACG 1042
Query 1040 AGCTGCAGTCTGCAACAAGCAATTTCACATCGTCTAGTTCAATCGGAGGATCAGGGTACA 1099
||||||| || || |||||| |||||||||||||||| || || ||||||||||||||||
Sbjct 1043 AGCTGCAATCAGCTACAAGCGATTTCACATCGTCTAGCTCGATTGGAGGATCAGGGTACA 1102
Query 1100 TCGGAAAAATCAACGGCGATGGTGCAATGATCAAGAAAATCGAAGGAAACGCATCGGAGG 1159
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1103 TCGGAAAAATCAACGGCGATGGCGCAATGATCAAGAAAATCGAAGGAAACGCATCGGAGG 1162
Query 1160 AAATCAACTTATTGTCGAAACTAAACCATCTCAACATCATCCGTCTCTCTGGATTCTGTC 1219
|| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1163 AAGTCAACTTATTGTCTAAACTAAACCATCTTAACATCATCCGTCTCTCTGGATTCTGTT 1222
Query 1220 TCCATGAAGGAGACTGGTACTTAGTCTACGAATACGCTTCAAACGGAAGCTTAAGTGAAT 1279
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1223 TCCATGAAGGAGATTGGTACTTAGTCTACGAACACGCTTCAAACGGAAGCTTAAGTGAAT 1282
Query 1280 GGATCCACACGACGAAATCGCT-CTTAAACTTGACACAGAAGCTACAAATCGCTTTGGAT 1338
|||||||||||||||||||| | | ||| ||||||||| || ||||||||||||||||||
Sbjct 1283 GGATCCACACGACGAAATCGTTAC-TAAGCTTGACACAAAAACTACAAATCGCTTTGGAT 1341
Query 1339 ATAGCAACAGGGCTAAACTATCTACACAACTTCGCTGATCCTCCATACGTTCACAGAGAC 1398
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1342 ATAGCAACAGGGCTAAACTATCTACACAACTTCGCTGATCCTCCATACGTTCACAGAGAT 1401
Query 1399 TTGAACAGCAACAATGTGTTCCTCGACATTGAGTTTCGAGCAAAGATTGGTAACTTAGGG 1458
||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||
Sbjct 1402 TTGAACAGCAACAATGTGTTCCTCGACCTCGAGTTTCGAGCAAAGATTGGTAGTTTAGGT 1461
Query 1459 TCAGCAAGATCAACAACTGAAGATTTCGTGTTGACCAAGCATGTGGAAGGAACAAGAGGG 1518
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1462 TCAGCAAGATCAACGACTGAAGATTTCGTGTTGACCAAGCACGTGGAAGGAACAAGAGGG 1521
Query 1519 TACTTAGCTCCAGAGTATATGGAACATGGTTTAGTTTCAACTAAGCTTGATGTCTATGCT 1578
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1522 TACTTAGCTCCGGAGTATTTGGAACATGGTTTAGTTTCAACTAAGCTTGATGTCTATGCT 1581
Query 1579 TTTGGAGTTGTCTTGTTGGAGATTGTTACTGGTAAAGAAGCTTCTGAATTGAAGAAAGAG 1638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1582 TTTGGAGTTGTCTTGTTGGAGATTGTTACTGGTAAAGAAGCTTCTGAATTGAAGAAAGAG 1641
Query 1639 ATCGATGAAGGTAATGCGATTGACGAGATTTTGATTGGTGGAAGATTGTTACCTGAAGGA 1698
|||||||||||||| || ||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1642 ATCGATGAAGGTAAAGCTATTGATGAGATTTTGATTCATGGAAGATTGTTACCTGAAGGA 1701
Query 1699 TTAGTGAGTTTTGTTGTGAGATTGGTGGTGGATTGTTTGAAGAAAGATCATTTGAATCGT 1758
||| |||||||||| |||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1702 TTAACAAGTTTTGTTGAGAGATTAGTGGTGGATTGTTTAAAGAAAGATCATTTGAATCGT 1761
Query 1759 CCATCGATGGATGAAATTGTTATGTCTTTGTCTAAGATCTTGACGGCTACACAAAACTGG 1818
|||||||||||||||| ||||||||||||||||||||||||| ||||||| || ||||||
Sbjct 1762 CCATCGATGGATGAAAATGTTATGTCTTTGTCTAAGATCTTGGCGGCTACGCAGAACTGG 1821
Query 1819 GAAGAATCATCGTACTAA 1836
|||||||| |||||||||
Sbjct 1822 GAAGAATCGTCGTACTAA 1839
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90862986450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5