BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481243
Length=1230
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23810.1 | Symbols: TET8 | tetraspanin8 | chr2:10135605-1013... 1676 0.0
> AT2G23810.1 | Symbols: TET8 | tetraspanin8 | chr2:10135605-10137561
REVERSE LENGTH=1285
Length=1285
Score = 1676 bits (907), Expect = 0.0
Identities = 1076/1153 (93%), Gaps = 30/1153 (3%)
Strand=Plus/Plus
Query 1 ACCAAACCAAACGAAACTTCTCTGTAATATCC-TCTCCAAATTTCCGAACTTTCACGCGT 59
|||||| ||||||||||||||||| |||| || ||||||||||||| ||||||||||||
Sbjct 4 ACCAAAACAAACGAAACTTCTCTGCAATAGCCTTCTCCAAATTTCCTCACTTTCACGCGT 63
Query 60 TTCAATCTTCTCTATATTAACTTATTTCCA-CAAACCCATCAAAA-CCCACTC--A---- 111
|||| |||||||||||| ||||| ||| || | |||||||||||| ||||||| |
Sbjct 64 TTCAGTCTTCTCTATATAAACTTGTTT-CATC-AACCCATCAAAATCCCACTCAAATTCT 121
Query 112 --TT--GTGTTCCTCAAATTCTCTATCTTTCTCTGATTTCATCTTAAGGGTTCCTCAAAG 167
|| |||||| |||||||||| |||||||||| | ||||||| |||||||||||||||
Sbjct 122 GTTTCAGTGTTCTTCAAATTCTCAATCTTTCTCTCAATTCATCTAAAGGGTTCCTCAAAG 181
Query 168 TTTCAATCTTTCTCTCTGAATCTAAACCATGGCTCGTTGTAGCAACAATCTCGTAGGGAT 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 TTTCAATCTTTCTCTCTGAATCTAAACCATGGCTCGTTGTAGCAACAATCTCGTAGGGAT 241
Query 228 ACTAAATTTCCTTGTCTTTCTTCTCTCAATCCCAATCTTAGCTGGTGGAATCTGGCTAAG 287
||| |||||||| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 242 ACTCAATTTCCTAGTATTTCTTCTCTCGATCCCAATCTTAGCTGGTGGAATCTGGCTAAG 301
Query 288 CCAAAAAGGGTCAACAGAGTGTGAAAGATTCCTAGACAAACCAGTGATTGCTCTTGGTGT 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 CCAAAAAGGGTCAACAGAGTGTGAAAGATTCCTAGACAAACCAGTGATTGCTCTTGGTGT 361
Query 348 TTTCCTTATGGTTGTAGCAATAGCTGGTTTAATAGGTTCTTGTTGTAGAGTCACATGGCT 407
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 362 TTTCCTTATGGTTGTAGCAATAGCTGGTCTAATAGGTTCATGTTGTAGAGTCACATGGCT 421
Query 408 TCTTTGGGTTTATCTCTTTGTCATGTTCCTTTTGATTCTTCTTGTGTTCTGTATTACTGT 467
||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct 422 TCTTTGGGTTTATCTCTTTGTCATGTTCCTTTTGATTCTCCTTGTGTTCTGTATAACAGT 481
Query 468 TTTTGCCTTTGTTGTTACTAACAAAGGAGCTGGTGAAGCTATTGAAGGAAAAGGTTATAA 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 TTTTGCCTTTGTTGTTACTAACAAAGGAGCTGGTGAAGCTATTGAAGGAAAAGGTTATAA 541
Query 528 AGAGTATAGACTTGGTGATTACTCTGA-TTGGTTACAGAAACGTGTTGAGAATGGAAAAA 586
|||||||| |||||||||||||||| | ||||||||||||||||||||||||||| ||||
Sbjct 542 AGAGTATAAACTTGGTGATTACTCT-ACTTGGTTACAGAAACGTGTTGAGAATGGTAAAA 600
Query 587 ATTGGAATAAGATTAGAAGTTGTCTTGTTGAGAGCAAAGTTTGTTCTAAGCTTGAAGCTA 646
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 601 ATTGGAATAAGATTAGGAGTTGTCTTGTGGAGAGCAAAGTTTGTTCTAAGCTTGAAGCCA 660
Query 647 AGTTTGTTAATGTTCCGGTGACTAGTTTCTACAATGAACATCTTACTGCTCTTCAGTCTG 706
|||||||||||||||| || | |||||||||||| |||||||||||||||||||||||||
Sbjct 661 AGTTTGTTAATGTTCCTGTCAATAGTTTCTACAAGGAACATCTTACTGCTCTTCAGTCTG 720
Query 707 GTTGCTGCAAACCTTCAGATGAATGCGGTTTCGAGTACGTAAACCCAACAACCTGGAACA 766
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 721 GTTGCTGCAAACCTTCAGATGAATGTGGTTTCGAGTACGTAAACCCAACAACCTGGACCA 780
Query 767 AGAACACAACGGGAACACACACTAATCCAGACTGCCAAACATGGGACAACGCGAAAGAAA 826
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 781 AGAACACAACGGGAACACACACTAATCCAGACTGCCAAACCTGGGACAACGCAAAAGAAA 840
Query 827 AGCTCTGCTTCGACTGTCAATCTTGCAAAGCGGGTCTACTCGACAACGTCAAAAGCGCTT 886
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 841 AGCTCTGCTTCGATTGTCAATCTTGTAAAGCGGGTCTACTCGACAACGTCAAAAGCGCTT 900
Query 887 GGAAGAAAGTTGCAATCGTCAACATCATCTTCCTTGTCTTCCTCATCATTGTCTACTCTG 946
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 901 GGAAGAAAGTTGCAATCGTTAACATCGTCTTCCTTGTCTTCCTCATCATTGTCTACTCTG 960
Query 947 TTGGTTGCTGTGCTTTCAGGAACAACAAGAGGGATGATAGTTATACTCGTACCTACGGAT 1006
||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||
Sbjct 961 TTGGTTGCTGTGCTTTCAGGAACAACAAGAGGGATGACAGTTATTCCCGTACCTACGGAT 1020
Query 1007 ATAAGCCTTGAACATAGTTTAACCGGTTTTAGGACAGAGATTCGTTGATCGGTTTATACA 1066
||||||||||||||||||||| | ||||||||||||||||||||||||| | ||
Sbjct 1021 ATAAGCCTTGAACATAGTTTATCGGGTTTTAGGACAGAGATTCGTTGAT------A--CA 1072
Query 1067 TTAT-GGAGTTTGCTTTTATGTTTGAT--TTTT-ATCTT-GGTGTTTTGATGAGACATAT 1121
|| | |||||||| ||||||||||||| |||| ||||| |||||||||||||||| |||
Sbjct 1073 TTGTTGGAGTTTGGTTTTATGTTTGATGATTTTTATCTTTGGTGTTTTGATGAGACCTAT 1132
Query 1122 TGCTTGTACAGCT 1134
|||||||||||||
Sbjct 1133 TGCTTGTACAGCT 1145
Score = 156 bits (84), Expect = 6e-37
Identities = 94/99 (95%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 1132 GCTATACCTTGATATTGATTTATTATATGCTTTTATTAGTTTATTGTTTCTCTATACATA 1191
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1184 GCTAAACCTTGATATTGATTTATTATATGCTTTTATTAGTTTATTGTTTCTCTATTCATA 1243
Query 1192 TCATGTTCTTTTGATCTTCTCTTTAAGGAACAGAGAAGC 1230
||||||||||||| ||||||| || ||||||||||||||
Sbjct 1244 TCATGTTCTTTTGTTCTTCTCCTTGAGGAACAGAGAAGC 1282
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60441456180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5