BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481245
Length=951
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23820.2 | Symbols: | Metal-dependent phosphohydrolase | ch... 1483 0.0
> AT2G23820.2 | Symbols: | Metal-dependent phosphohydrolase |
chr2:10140527-10142899 FORWARD LENGTH=1069
Length=1069
Score = 1483 bits (803), Expect = 0.0
Identities = 903/950 (95%), Gaps = 12/950 (1%)
Strand=Plus/Plus
Query 1 AAAGCaaaaaaaaa-aaaaaTGAAGAATGTGAATCGAGtcttcttctgcaaatcactctc 59
|||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 51 AAAG-AAAAAAAAAGAAAGATGAAGAATGTGAATCGAGTCTTCTTCTGCAAATCACTATC 109
Query 60 tctcgtcttcctcgttccttctttcactcgttctcatctcCGATTCACTTACTCCGCCGC 119
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 110 TCTCGTCTTCCTCGTTCCTTCTTTCACTCGTTCTCATATCCGATTTACTTACTCCGCCGC 169
Query 120 CGGAGCTTCTTCTCCGAATCGAGCAATTCATTGCATGGCTTCCGATTCCCCTCAATCCGG 179
||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 170 CGGTGCTTCTTCTCCTAATCGAGCTATTCACTGCATGGCTTCCGATTCCCCTCAATCCGG 229
Query 180 AGATGGTTCCGTCTCTTCTCCTCCTAATGTCGCGGCGGTTCCCActtcttcttcttcttc 239
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 230 AGATGGTTCCGTCTCTTCTCCTCCTAATGTCGCGGCTGTTCCCTCTTCTTCTTCTTCTTC 289
Query 240 gtccgcttcttccgccattgattttctctctctctGTACTCGTCTCAAGACAACTCCAAG 299
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 290 GTCCGCTTCTTCCGCCATTGATTTCCTCTCTCTCTGTACTCGTCTCAAGACAACTCCAAG 349
Query 300 AGCTGGATGGATAAAGAGAGATGTTAAAGATCCAGAATCAATTGCGGATCATATGTATCG 359
|||||||||||| ||||||||||| |||||||||||||| || |||||||| ||||||||
Sbjct 350 AGCTGGATGGATTAAGAGAGATGTGAAAGATCCAGAATCTATAGCGGATCACATGTATCG 409
Query 360 GATGGGTCTTATGGCTCTAATTTCTTCAGATATCCCTGGTGTTAACAGAGACAAATGCAT 419
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 410 GATGGGTCTTATGGCTCTAATTTCTTCAGATATCCCCGGTGTTAACAGAGACAAATGCAT 469
Query 420 GAAAATGGCAATTGTTCATGACATTGCAGAAGCCATTGTAGGAGACATTACACCTTCTTG 479
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 470 GAAAATGGCGATTGTTCATGATATTGCAGAAGCCATTGTAGGAGACATTACACCTTCTTG 529
Query 480 TGGGATCTCTAAAGAAGAGAAAAACCGAAGAGAAAGCGAAGCACTTGAACACATGTGCAA 539
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 530 TGGGATATCTAAAGAAGAGAAAAACCGAAGAGAAAGCGAAGCACTTGAGCACATGTGCAA 589
Query 540 ACTCTTGGGTGGAGGAGAAAGAGCCAAAGAAATCGCTGAGCTTTGGAGAGAATACGAAGA 599
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 590 ACTCTTGGGTGGAGGCGAAAGAGCAAAAGAAATCGCTGAGCTTTGGAGAGAATACGAAGA 649
Query 600 GAACTCTTCACCTGAAGCCAAAGTTGTTAAAGATTTCGATAAAGTTGAGCTGATACTACA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 GAACTCTTCACCTGAAGCCAAAGTTGTTAAAGATTTCGATAAAGTTGAGCTGATACTACA 709
Query 660 AGCTTTGGAATATGAACAAGGTCAAGGGAAAGATTTAGAAGAGTTTTTCCAATCAACCGC 719
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||
Sbjct 710 AGCTTTGGAATATGAACAAGATCAAGGGAAAGATCTAGAAGAGTTTTTCCAATCAACAGC 769
Query 720 AGGGAAGTTCCAGACTGATATAGGTAAGGCTTGGGCATCGGAGATTGTTTCAAGAAGACG 779
|||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 770 AGGGAAGTTCCAGACTAATATAGGCAAGGCTTGGGCGTCGGAGATTGTTTCAAGAAGACG 829
Query 780 AAAGCAACATTAGTTCTCACTTGACTCtttttttttttGGTTTCTTAACGTCTAGTTCTC 839
|||||||||||||||||||||||||||||| ||||| | ||||||||||||||| |||
Sbjct 830 AAAGCAACATTAGTTCTCACTTGACTCTTTCTTTTT--G-TTTCTTAACGTCTAG--CTC 884
Query 840 AGTGGAGTTCATCAAATACT-GTAACGTTTCAAATTTAGTTATCTTAAGATTTTTCTAAT 898
||||||||||| || |||| ||| ||||||||||||| | |||||||| ||||||||||
Sbjct 885 AGTGGAGTTCA--AA-TACTCGTA-CGTTTCAAATTTAATCATCTTAAGGTTTTTCTAAT 940
Query 899 AATCTTCGTAGCTGGCTTTACTTGTTTTGTTTCTATCACTAATAAAAGAT 948
|||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 941 AATCTTCGTAGCTGTCTTTACTTGTTTTGTTACTATCACTAATAAAAGAT 990
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46516820122
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5