BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481251
Length=1291
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23945.1 | Symbols: | Eukaryotic aspartyl protease family p... 1953 0.0
AT2G23940.1 | Symbols: | Protein of unknown function (DUF788) ... 159 5e-38
> AT2G23945.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr2:10185229-10186605 REVERSE LENGTH=1377
Length=1377
Score = 1953 bits (1057), Expect = 0.0
Identities = 1217/1295 (94%), Gaps = 8/1295 (1%)
Strand=Plus/Plus
Query 1 ATGGCGATGAAGTTGATACGCCGTGAAACAGTGGTCCGTCACAACCCAGATGCTCGAGTT 60
|||||||||||| |||||| ||||||| |||||| ||||| ||||||| |||||||||||
Sbjct 85 ATGGCGATGAAGCTGATACACCGTGAATCAGTGGCCCGTCTCAACCCAAATGCTCGAGTT 144
Query 61 CCGGTCACTCCAGAAGACCATATCCAACACATGACCGATATTTCATCAGCCAGGTTTAAG 120
||| |||||||||||||||||||| ||||| |||| ||||||||||||||| ||||||||
Sbjct 145 CCGATCACTCCAGAAGACCATATCAAACACCTGACAGATATTTCATCAGCCCGGTTTAAG 204
Query 121 TATTTACAGAATTCGATTGTTAAAGAGCTAGGCAGCAGTGATTTCCAAGTTGATGTGCAT 180
||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 205 TATCTACAGAATTCGATTGACAAAGAGCTAGGCAGCAGCAATTTCCAAGTTGATGTGGAA 264
Query 181 CAAGCAATCAAGACATCATTGTTTTTTGTAAATTTCTCGGTAGGACAGCCTCCGGTACCG 240
||||||||||| |||||||||||| |||| |||||||| ||||||||||| ||||| |||
Sbjct 265 CAAGCAATCAAAACATCATTGTTTCTTGTGAATTTCTCCGTAGGACAGCCACCGGTGCCG 324
Query 241 CAGTTCACTATCATGGATACTGGAAGCTCACTTTTATGGATCCAATGTCATCCCTGCAAA 300
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 325 CAGTTAACTATCATGGATACTGGAAGCTCACTTTTATGGATCCAATGTCAACCCTGCAAA 384
Query 301 CACTGCTCATCAAATCATATGATCCATCCTGTCTTCAATCCAGCATTGTCTTCAACATTT 360
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 CACTGCTCATCAGATCATATGATCCATCCTGTCTTCAATCCAGCATTGTCTTCAACATTT 444
Query 361 GTAGAGTGTTCCTGCGATGATCGTTTTTGCAGGTATGCACCAAACGGACATTGC---TCA 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 445 GTAGAGTGTTCCTGCGATGATCGTTTTTGCAGGTATGCACCAAACGGACATTGCGGCTCA 504
Query 418 TCAAACAAGTGCGTTTATGAACAGGTGTATATAAGCGGCACTGGCTCAAAAGGCGTTCTA 477
||||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 505 TCAAACAAGTGTGTTTACGAACAAGTGTATATAAGCGGCACTGGGTCAAAAGGCGTTCTA 564
Query 478 GCTAAAGAACGGTTGACCTTCACAACACCTAATGGAAACACTGTTGTGACCCAACCTATT 537
|||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 565 GCTAAAGAACGGTTAACCTTCACAACACCTAACGGTAACACTGTTGTGACCCAACCTATT 624
Query 538 GCCTTTGGGTGTGGCCATGAGAATGGAGAGCAGTTGGAGAGTGAGTTCACTGGTATTTTG 597
|| |||||||||||| | |||||||||||||||||||| ||| | |||||||||||||||
Sbjct 625 GCTTTTGGGTGTGGCTACGAGAATGGAGAGCAGTTGGAAAGTCATTTCACTGGTATTTTG 684
Query 598 GGTTTAGGAGCCAAACCCACATCGCTTGCTGTACAGCTTGGGTCTAAATTCTCTTACTGC 657
|| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 685 GGGTTAGGAGCCAAACCCACATCACTTGCCGTACAGCTTGGGTCTAAATTCTCTTACTGC 744
Query 658 ATCGGTGATTTAGCTAACAAAAACTACGGTTACAATCAGCTGGTTCTGGGTGAGGACGCG 717
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 745 ATTGGTGATTTAGCTAACAAAAACTACGGTTACAATCAGCTGGTTCTGGGAGAGGACGCG 804
Query 718 GATATTTTAGGGGATCCAACACCCATTGAATTTGAGACAGAGAATGGTATCTACTATATG 777
|||||| | || ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 805 GATATTCTCGGCGATCCAACACCCATTGAATTTGAGACAGAGAATAGTATCTACTATATG 864
Query 778 AATCTTGAAGGGATTAGTGTTGGGGATAAACAACTCAATATCGAACCAGTGGTATTCAAA 837
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 865 AATCTAGAAGGGATTAGTGTTGGGGATACACAACTCAATATCGAACCAGTGGTATTCAAA 924
Query 838 AGAAGAGGGTCAAGAACAGGGGTCATACTCGACACGGGCACACTCTACACTTGGCTAGCA 897
|||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 925 AGAAGAGGACCAAGAACAGGGGTCATACTAGACTCGGGCACACTCTACACTTGGCTAGCA 984
Query 898 GATATAGCCTACAGAGAACTCTACAATGAAATAAAATCCATTCTGGATCCAAAATTAGAG 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 985 GATATAGCCTACAGAGAACTCTACAATGAAATAAAATCCATTCTGGATCCAAAATTAGAG 1044
Query 958 AGGTTCTGGTTTAGAGACTTCTTGTGCTACCATGGGAGAGTGAACGAAGAGCTCATAGGC 1017
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1045 AGATTCTGGTTTAGAGACTTCTTGTGCTACCATGGGAGAGTGAGCGAAGAGCTCATAGGC 1104
Query 1018 TTCCCTGTGGTGACATTTCATTTTGCAGGCGGAGCTGAGCTGGCTATGGAGGCCACAAGC 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105 TTCCCTGTGGTGACATTTCATTTTGCAGGCGGAGCTGAGCTGGCTATGGAGGCCACAAGC 1164
Query 1078 ATGTTTTATCCAATGA-CAGAATCGGATACGTATCATAACGTATTTTGTATGTCAGTGAG 1136
|||||||||||| | | ||||| || |||||| | |||||| ||||||||||||||||
Sbjct 1165 ATGTTTTATCCATT-ATCAGAACCGAATACGT-T--TAACGTCTTTTGTATGTCAGTGAA 1220
Query 1137 GCCAACCACAGAACATGGAGGGGAATATAAGGATTTCACAGCTATTGGGCTAATGGCTCA 1196
|||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1221 GCCAACCAAAGAACATGGAGGGGAATATAAGGAATTCACAGCTATAGGGCTAATGGCTCA 1280
Query 1197 ACAATACTACAATATTGCTTACGACCTTAAAGAAAGAAACATCTATCTCCAGAGAATCGA 1256
||||||||| ||||||| ||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1281 ACAATACTATAATATTGGTTACGACCTCAAAGAAAAAAACATCTATCTCCAGAGAATCGA 1340
Query 1257 CTGTGTTCTACTCGATGACTATTCCCCATCAAAGT 1291
|||||||| ||||||||||||||||||||||||||
Sbjct 1341 CTGTGTTCAACTCGATGACTATTCCCCATCAAAGT 1375
> AT2G23940.1 | Symbols: | Protein of unknown function (DUF788)
| chr2:10183966-10185331 FORWARD LENGTH=989
Length=989
Score = 159 bits (86), Expect = 5e-38
Identities = 96/101 (95%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 1191 GGCTCAACAATACTACAATATTGCTTACGACCTTAAAGAAAGAAACATCTATCTCCAGAG 1250
||||||||||||||| ||||||| ||||||||| ||||||| ||||||||||||||||||
Sbjct 989 GGCTCAACAATACTATAATATTGGTTACGACCTCAAAGAAAAAAACATCTATCTCCAGAG 930
Query 1251 AATCGACTGTGTTCTACTCGATGACTATTCCCCATCAAAGT 1291
|||||||||||||| ||||||||||||||||||||||||||
Sbjct 929 AATCGACTGTGTTCAACTCGATGACTATTCCCCATCAAAGT 889
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63503689425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5