BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg481262

Length=349
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G24040.1 | Symbols:  | Low temperature and salt responsive p...   512    8e-145


> AT2G24040.1 | Symbols:  | Low temperature and salt responsive 
protein family | chr2:10223945-10224630 FORWARD LENGTH=410
Length=410

 Score =  512 bits (277),  Expect = 8e-145
 Identities = 329/353 (93%), Gaps = 7/353 (2%)
 Strand=Plus/Plus

Query  1    TTGTTTCGTGAAGTTTCTCTCTTC-T-TCTTCTTCAAGTCATCAAATCTGATCTCATCTC  58
            ||||||||||||| |||||||||| | |||| |||||||||||||||||||||| |||||
Sbjct  15   TTGTTTCGTGAAGCTTCTCTCTTCTTCTCTTTTTCAAGTCATCAAATCTGATCTAATCTC  74

Query  59   TGTTAATTAATGGCTAGTAATTGCGAGCTTTGCTGCGAGATCTTCATCGCAATTCTTCTT  118
             || |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  75   CGTAAATTAATGGCGAGTAGTTGCGAGCTTTGCTGCGAGATCTTCATCGCAATTCTTCTT  134

Query  119  CCTCCTGTTGGAGTTTGTCTCAGGCATGGCTGTTGCACTGTTGAGTTCTTCATTTGTTTG  178
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  135  CCTCCTGTCGGAGTTTGTCTCAGGCATGGCTGTTGCACTGTTGAGTTCTTCATTTGTTTG  194

Query  179  ATACTCACTTGCTTAGGCTACTTACCGGGAATAATATACGCGATTTACGCGATTTGTTTC  238
            ||||| |||||||||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct  195  ATACTGACTTGCTTAGGCTACTTACCAGGAATAATATACGCAATTTACGCAATTTGTTTC  254

Query  239  TTGCACCACGATGAGTACTTTGATGAATACAGACGCCCAATCTACTATGTTGCTTGACCT  298
            ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  255  TTGCACCGCGATGAGTATTTTGATGAATACAGACGCCCAATCTACTATGTTGCTTGACCT  314

Query  299  -TGTGATTTATTCATTGCTCTTGAGAA-A-ATATTGTACTTTAAAGTGTGATT  348
             | ||||| |||| ||||||||||| | | ||||||||||||||||||| |||
Sbjct  315  CT-TGATTGATTC-TTGCTCTTGAGCACACATATTGTACTTTAAAGTGTAATT  365



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16337018425


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5