BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481263
Length=2603
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24050.1 | Symbols: eIFiso4G2 | MIF4G domain-containing prot... 3696 0.0
> AT2G24050.1 | Symbols: eIFiso4G2 | MIF4G domain-containing protein
/ MA3 domain-containing protein | chr2:10225225-10228638
REVERSE LENGTH=2701
Length=2701
Score = 3696 bits (2001), Expect = 0.0
Identities = 2424/2623 (92%), Gaps = 50/2623 (2%)
Strand=Plus/Plus
Query 1 AAAACACAGAACACAGCTTCaaaaaaaaaaaaaaaGGGAATCGAAGTGATTTTATTATCT 60
||| ||||||||||||||||| ||||||||||||||||||||||||| || ||||||
Sbjct 17 AAACCACAGAACACAGCTTCAGCCAAAAAAAAAAAGGGAATCGAAGTGA--TT-TTATCT 73
Query 61 TCTCCACCGTCAAT----ACACATATATATACGCTATATAGCTCTATCTATCTGCaaaaa 116
|||||||||||||| |||||||||||||| ||||||| |||||||||||||| |||
Sbjct 74 TCTCCACCGTCAATACAGACACATATATATACACTATATACCTCTATCTATCTGC--AAA 131
Query 117 aaTTTATACTTTATT---TTATTC-AA-TCCTaaaaaaaTAAGAGAATCGAGTAATGCAA 171
| ||| | |||||| | ||| || | | |||||| ||||||||||||||||||||
Sbjct 132 ACTTT-T-TTTTATTGAATCCTTCTAATTGC-GAAAAAACAAGAGAATCGAGTAATGCAA 188
Query 172 CAACAAGGTGAACCATCGGTTTTGAGTTTGAGACCCGGCGGTGGTGGTGGCGGCGGCAGA 231
||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 189 CAACAAGGTGAACCATCGGTTTTGAGTTTGAGACCCGGC------GGTGGCGGCGGCAAA 242
Query 232 AGCAGGCTTTTCGTCCCACGATTTAGCTCCTCTTCCTCTTTTGATCTTACCAATGGCGGC 291
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 243 AGCAGGCTTTTCGTCCCTCGCTTTAGCTCCTCTTCCTCTTTTGATCTTACCAATGGCGGC 302
Query 292 GGTGCCGGAGAAACCCCTTTTCCCGTCAAGAGAGATGATTCTGGTGAACGTTTGAGGTTT 351
| ||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 303 --T-CCGAAGAAACCCCTTTTCCCGTCAAGAGAGAAAATTCTGGTGAACGTGTGAGGTTT 359
Query 352 ACCCGAGAACAGCTGCTTCAGCATAGAGAGTCTGTTCAAGTCTCTGATGAAATTCTTAGA 411
|||||||| || | |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 360 TCCCGAGAAGAGATACTTCAGCACAGAGAGTCTGTTCAAGTCTCTGATGAAATTCTTAGA 419
Query 412 CGATGTAAGGAAATCGCAGCTGAGCTTTTCGGCGAAGATCAGAGTTGGGGGAATCGTGCA 471
|| |||||||||||||||| ||||||||| |||||||| |||||||||||||||| ||||
Sbjct 420 CGCTGTAAGGAAATCGCAGTTGAGCTTTTTGGCGAAGAGCAGAGTTGGGGGAATCATGCA 479
Query 472 GCCGAGAATAAACTAACAAATCA-ACCTCTGAATCGTTATTCCGAGCCTGATAACCGCGA 530
||||||| |||| |||||||||| | ||| | ||||| || ||||| |||||||||| ||
Sbjct 480 GCCGAGAGTAAAATAACAAATCATA-CTCAGCATCGTCATACCGAGACTGATAACCGTGA 538
Query 531 CTGGCATAGTCGTGCGCAGATTCCGACCTCTGGTAAAGAATGGTTTAGAGACGACTCACG 590
||||||||||||| | |||||||| |||||||||||||||||||| || |||||| | ||
Sbjct 539 CTGGCATAGTCGTTCTCAGATTCCAACCTCTGGTAAAGAATGGTTAAGGGACGACCCTCG 598
Query 591 TGAAGCTAAAAATACATCTCAAGGGTCTGGTCCTACCCCTGTGCTGGTTAAAGCGGAGGT 650
|||||| |||| ||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 599 TGAAGCCAAAAGTACATGGCAAGGGTCTGGTCCTACCCCTGTGCTGATTAAAGCGGAGGT 658
Query 651 TCCGTGGTCAGCTAAAAGAGGAGCTCTTTCAGATAAAGACCGAGTCGTCAAGAGCGTGAA 710
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 659 TCCGTGGTCAGCTAAAAGAGGAGCTCTTTCAGATAAAGATCGAGTCGTTAAGAGCGTGAA 718
Query 711 AGGTATTCTGAACAAGCTTACTCCGGAGAAGTACGAGCTTCTTAAAGGTCAATTGATTGA 770
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AGGTATTCTAAACAAGCTTACTCCGGAGAAGTACGAGCTTCTTAAAGGTCAATTGATTGA 778
Query 771 TGCTGGCATCGA-TTCTGCTGATATCCTAAAGGAAGTGATACAGCTAATTTTTGAGAATG 829
||||||||| | ||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 779 CGCTGGCATC-ACTTCCGCAGATATCCTAAAGGAAGTGATACAGCTAATTTTTGAGAATG 837
Query 830 CTATACTGCAGCCGACATTCTGCGAGATGTATGCTCTTCTGTGTTTTGATATTAACGGAA 889
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 CTATACTGCAGCCCACATTCTGCGAGATGTATGCTCTTCTGTGTTTTGATATTAACGGAC 897
Query 890 AGCTCCCTTCGTTTCCGTCTGAGGAACCTGGTGGGAAAGAAATAACTTTTAAAAGAGTCC 949
|||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 898 AGCTACCTTCGTTTCCCTCTGAGGAACCCGGTGGGAAAGAAATAACCTTTAAAAGAGTGC 957
Query 950 TTTTAAATAATTGCCAAGAGGCATTTGAGGGTACTGGCAAATTGAAGAAAGAAATCAGAC 1009
|||| ||||||||||||||||||||||| ||| |||||||||||||| |||| |||||||
Sbjct 958 TTTTGAATAATTGCCAAGAGGCATTTGAAGGTGCTGGCAAATTGAAGGAAGAGATCAGAC 1017
Query 1010 AGATGACTAATCCAGACCAAGAAATGGAAAGAATGGATAAGGAGAAAATGGCGAAGCTCC 1069
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1018 AGATGACTAATCCAGACCAAGAAATGGAAAGAATGGATAAGGAGAAAATGGCAAAGCTCC 1077
Query 1070 GGACACTTGGAAATATTCGTCTGATTGGAGAACTTCTGAAGCAAAAGATGGTGACC-GAG 1128
|||||||||||||||| ||||||||||| |||||||| ||||||||||||||| || |||
Sbjct 1078 GGACACTTGGAAATATCCGTCTGATTGGTGAACTTCTCAAGCAAAAGATGGTG-CCTGAG 1136
Query 1129 AAGATAGTTCATCATATTGTCCAAGAGCTTTTAGGAGAAGATAGTAAAGCTTGCCCAGCA 1188
|||||||||||||||||||| || |||||||||||||| |||| ||||||||||||||||
Sbjct 1137 AAGATAGTTCATCATATTGTTCAGGAGCTTTTAGGAGACGATACTAAAGCTTGCCCAGCA 1196
Query 1189 GAGGGAGATGTTGAAGCTCTCTGCCAATTTTTTATAACCATTGGGAAGCAACTTGATAAC 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1197 GAGGGAGATGTTGAAGCTCTCTGCCAATTTTTTATAACCATTGGGAAGCAACTTGATGAC 1256
Query 1249 AGCCCACGATCTCGAGGTATTAATGACATGTACTTCGGTCGGTTGAAGGAGCTAGCAATG 1308
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
Sbjct 1257 AGCCCACGATCTCGAGGTATTAATGACACGTACTTTGGTCGGTTGAAGGAGCTAGCAAGG 1316
Query 1309 CACCCTCAGCTAGAGCTGCGTCTCAGATTTATGGTCCAAAACGTTGTTGATATGCGAGCT 1368
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1317 CACCCTCAGCTAGAGCTGCGTCTCAGATTTATGGTCCAAAACGTTGTTGATCTTCGAGCT 1376
Query 1369 AACAAATGGGTACCAAGGCGTGAGGAGGTGAAAGCGAAGAAAATCAATGAAATCCATTCT 1428
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 AATAAATGGGTACCAAGGCGTGAGGAGGTGAAAGCGAAGAAAATCAATGAAATCCATTCT 1436
Query 1429 GAGGCAGAGAGAAATCTTGGGTTGCGTCCGGGTGCAATGGCAAATATGAGACACAACAAC 1488
||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||
Sbjct 1437 GAGGCAGAGAGAAATCTTGGGATGCGTCCGGGTGCAATGGCAAGTATGAGAAACAACAAC 1496
Query 1489 AACAACCGCGCTGCGGTTTCTGGTGCAGCAGACAGTATTGGCTCT-GGAAATATCCTTGG 1547
||||||||||||||||||||||||||||||||| |||| |||| | ||||||||||||||
Sbjct 1497 AACAACCGCGCTGCGGTTTCTGGTGCAGCAGACGGTATGGGCT-TGGGAAATATCCTTGG 1555
Query 1548 CCGTCCTGGTACTGGAGGAATGATGCCCGGCATGCCAGGAACTAGGATGGTGCCTATTGT 1607
|||||||||||||||||||||||||||||||||||| ||||||||| || |||||| ||
Sbjct 1556 CCGTCCTGGTACTGGAGGAATGATGCCCGGCATGCCGGGAACTAGGGTGATGCCTA-TG- 1613
Query 1608 TGATGAAGGCGGCTGGGAAGTACCACGGACCCGGTCCATGCCCAGAGGTAATAGACAAAC 1667
||||||| |||||||||| | ||||||||||||||||||||||||| |||||||||||
Sbjct 1614 -GATGAAGACGGCTGGGAAATGGCACGGACCCGGTCCATGCCCAGAGGCAATAGACAAAC 1672
Query 1668 AGTGCAGCAGCCGCGTGTTCAGCCACCTCCTGCTATCAACAAGTCACTCTCAGTCAACTC 1727
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1673 AGTGCAGCAGCCGCGTTTTCAGCCACCTCCTGCTATCAACAAGTCACTCTCAGTCAACTC 1732
Query 1728 AAGGCTTCTTCCTCAGGGTAGCGGAGGTCTCCTCAATGGTGGTGGTAGGCCAAGCGCTCT 1787
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1733 AAGGCTTCTTCCTCAGGGTAGCGGAGGTCTCCTCAATGGTGGTGGTAGGCCAAGCCCTCT 1792
Query 1788 TGTGCAAGGTAACGGTTCTAGCTCAGCTCCTCAAGCCTCTAAACCCATTCCAACCGTTGA 1847
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1793 TTTGCAAGGTAACGGTTCTAGCTCAGCTCCTCAAGCCTCTAAACCCATTCCAACTGTTGA 1852
Query 1848 GAAGCCACAACCACGGTCTCAACCTCAGCCACAGCGACAGGCGGCTCCTCTGGCTAATAG 1907
|||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 1853 GAAGCCGCAACCACGGTCTCAACCTCAGCCACAGCCACAGGCAGCTCCTCTGGCTAATAG 1912
Query 1908 CCTGAGCGCAGGAGAGCTCGAAAGAAAAACCAAGTCGCTTCTTGAAGAGTATTTTAGTGT 1967
||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
Sbjct 1913 CCTGAACGCAGGAGAGCTCGAGAGAAAAACCAAGTCGCTTCTTGAAGAGTATTTCAGTAT 1972
Query 1968 CCGTTTAGAGGATGAGGCATTGCAATGCGTTGAGGAACTGAAATCTCCATCTTATCACCC 2027
||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1973 TCGTTTAGTGGATGAGGCATTGCAATGCGTTGAGGAACTAAAATCTCCATCTTACCACCC 2032
Query 2028 GGAGCTCGTCAAGGAAGCCATCTCACTCGGTCTAGAGAAAAACCCTCCGTTGGTTGAACC 2087
|||||||||||||||| | ||||| |||||||||||||||||||| || |||||||||||
Sbjct 2033 GGAGCTCGTCAAGGAAACAATCTCGCTCGGTCTAGAGAAAAACCCACCATTGGTTGAACC 2092
Query 2088 AATTACCAAACTCTTGAAACATCTGATCTCGAAGAATGTGCTGACATGTAAAGACTTAGG 2147
|||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 2093 AATTGCCAAACTCTTGAAACATCTGATCTCTAAGAATGTGCTGACATCTAAAGACTTAGG 2152
Query 2148 GGCGGGTTGTTTGCTCTATGGTTCTATGTTGGATGACATTGGAATCGATCTGCCAAAAGC 2207
||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 2153 GGCAGGTTGTTTGCTCTACGGTTCCATGTTGGATGACATTGGAATCGATCTGCCAAAAGC 2212
Query 2208 ACCAAACAGCTTCGGAGAGATCTTAGGGAAGTTGGTCTCAGCGAAAGTATTAGACTTCGA 2267
||||||||||||||||||| |||||||| ||||||||||||| ||||| || || |||||
Sbjct 2213 ACCAAACAGCTTCGGAGAGTTCTTAGGGGAGTTGGTCTCAGCTAAAGTCTTGGATTTCGA 2272
Query 2268 GCTGGTGAAAAAGGTACTGATGAAGATGGAAGATGAGTGGTTCAGAAAAGCCGTACTTGA 2327
|||||||| | | || |||| |||||||||||||||||||||||||||| ||||||| |
Sbjct 2273 GCTGGTGAGAGATGTTCTGAAGAAGATGGAAGATGAGTGGTTCAGAAAAACCGTACTCAA 2332
Query 2328 TGCAGTTATACAGAGTGTTCGCGAGAGTCCATCGGGACAGTCTGTATTGGATTCGCAGGC 2387
|||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2333 TGCAGTGATAAAGAGTGTTCGCGAGTGTCCATCGGGACAGTCTGTATTGGATTCGCAGGC 2392
Query 2388 CGCGGAAGTTGAGGCATGCCAGAGTTTGCTCTAAAAGTATAT-GGTTCTCGACGGCGAAG 2446
| ||||||||||||||||||||||||||||||||||| || |||| | | |||| |||
Sbjct 2393 GGTTGAAGTTGAGGCATGCCAGAGTTTGCTCTAAAAGTAAATTGGTT-TGGCCGGCAAAG 2451
Query 2447 TCTTAAAACGTTTTACTTGAG---TAGTCTGAATCAttttt-ttATAAAAGTTTTGAGTT 2502
|||||||| |||| ||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 2452 TCTTAAAATGTTT-ACTTGAGGAGTAGTCTGAATCATTTTTCTTATATAAGTTTTGAGTT 2510
Query 2503 AATATCATAATATACTTGGAAGATTTGGTTCAGTTTTGTTACATCTTTGGtttttttCGT 2562
||||||| | || ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2511 AATATCACA-TA--CTTGGAAGATTTGGTTCAGTTTTGTTACATCTTTG-TTTTTTTCGT 2566
Query 2563 TCATCTTGAGTTTTGAACATTTCAGGGTGAG-a-aaaaaaaaa 2603
||||||||||||||||||||||||||||||| | |||||||||
Sbjct 2567 TCATCTTGAGTTTTGAACATTTCAGGGTGAGGAGAAAAAAAAA 2609
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 129230045168
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5