BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481264
Length=1085
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24060.1 | Symbols: | Translation initiation factor 3 prote... 1291 0.0
AT3G30122.1 | Symbols: | pseudogene similar to peptide chain r... 111 1e-23
> AT2G24060.1 | Symbols: | Translation initiation factor 3 protein
| chr2:10229385-10231563 FORWARD LENGTH=1180
Length=1180
Score = 1291 bits (699), Expect = 0.0
Identities = 852/922 (92%), Gaps = 26/922 (3%)
Strand=Plus/Plus
Query 1 TTCTGGATAAGAGCTTCGCGAAGGTTTGAAACCTCTGAGTGAAGAAGAAGCGCCATGGCT 60
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 15 TTCTGGATAAGAGCTTCGTGATGGTTTGAAACCTCTGAGTGAAGAAGAAGCGCCATGGCT 74
Query 61 GGGATTA-C--CAGCACCGTCGGATTCAACGCCGTTTTCGCCGGAATCACCAAAACAGTA 117
||||||| | ||||||||| |||||||||||||| ||| ||||||| ||||||||||||
Sbjct 75 GGGATTACCAGCAGCACCGTTGGATTCAACGCCGTCTTCACCGGAATAACCAAAACAGTA 134
Query 118 TCATCACATTCACTATTCGCCGTCGATTCCAAACTCTGTGGACTTCGTCTCTCCAAAACC 177
|||||||||||||| ||| | || ||||||||||||||| | ||||||||||||||||||
Sbjct 135 TCATCACATTCACTCTTCTCTGTTGATTCCAAACTCTGTAGTCTTCGTCTCTCCAAAACC 194
Query 178 GAACTTTCCTTCGCAAATCTCACTCCTACTCCTCGCCGTGGC-TTCACCGTCACTTGCCG 236
||||| || ||| | |||||||||||| ||||||||||| || ||| |||||||||||||
Sbjct 195 GAACTGTCTTTCACTAATCTCACTCCTTCTCCTCGCCGT-GCTTTCGCCGTCACTTGCCG 253
Query 237 CTTCGGCggtggtggtggtggtggCGGAGGTTATCGTTTCTCTGGAGATTCTAGACGAGG 296
||||||| ||||||||| ||||||||||| ||||||||||| |||| ||||
Sbjct 254 CTTCGGC------GGTGGTGGT---GGAGGTTATCGATTCTCTGGAGACAATAGAAGAGG 304
Query 297 TAGGCCTAAAGAAGCCGAAATTGATGAAGCGCTTGATATCTCCTCAATTAGGTCAGCTAC 356
|||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 305 TAGGCCGAAAGAAGCTGAAATTGATGAAGCTCTTGATATCTCCTCAATTAGGTCAGCTAC 364
Query 357 TGTTAGGCTTATCGATGGACAACAAAACATGCTTGGTTTAGTGTCTAAAGACGAAGCCGT 416
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 365 TGTTAGGCTTATCGATGGGCAACAAAACATGCTTGGTTTAGTGTCTAAAGACGAAGCCGT 424
Query 417 TCGAATGGCTGATGATGCTGAGCTTGATCTGGTGATATTATCGCCTGATGCAGATCCTCC 476
||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||
Sbjct 425 TCGAATGGCTGATGATGCTGAACTTGATCTGGTTATACTATCGCCTGATGCAGATCCTCC 484
Query 477 GGTTGTTAAAATGATGGATTACAGTAAATACAGATACGAACAGCAAAAGAGGAAAAAAGA 536
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 485 GGTTGTTAAAATGATGGACTACAGTAAATACAGATACGAACAGCAAAAGAGGAAAAAAGA 544
Query 537 TCAGCAAAAGAAAACCACTCGCATGGACTTAAAGGAGCTTAAAATGGGTTACAACATTGA 596
||||||||||||||| ||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 545 TCAGCAAAAGAAAACAACTCGCATGGATTTAAAGGAGCTTAAAATGGGTTATAATATTGA 604
Query 597 TCAGCATGATTATTCCGTTCGGT-TAAGGGCTGCCCAAAAGTTCTTGCAAGATGGTGACA 655
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 605 TCAGCATGATTATTCCGTTC-GTCTAAGGGCTGCCCAAAAGTTCTTGCAAGATGGTGACA 663
Query 656 AGGTTAAGGTGATTGTGAGCATGAAAGGACGAGAAAACGAGTTCAGAAATATCGCTATTG 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 AGGTTAAGGTGATTGTGAGCATGAAAGGACGAGAAAACGAGTTCAGAAATATCGCTATTG 723
Query 716 AACTCCTCAGACGTTTTCAAACCGAAATAGGGGAGCTTGCGACTGAAGAGAGCAAAAACT 775
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 724 AACTCCTCAGACGTTTCCAAACCGAAATAGGGGAGCTTGCAACTGAAGAGAGCAAAAACT 783
Query 776 TCAGGGACAGAAACT-TGTTCATTATCTTGGTACCAAACAAGGAAATGATTCGGAAACCA 834
||||||||||||| | |||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 784 TCAGGGACAGAAA-TATGTTCATTATCTTGGTCCCAAACAAAGAAATGATTCGGAAACCA 842
Query 835 CAAGAACCAGCCTCAAGAAAGAAGAAAAAA-CAATCGGAAAACGAAGTTTCAG-TT--GC 890
||||||||| || ||||||||||||||||| || |||||||||||| ||||| || ||
Sbjct 843 CAAGAACCACCCACAAGAAAGAAGAAAAAAACAG-CGGAAAACGAAGCTTCAGCTTCAGC 901
Query 891 ---AGAAATAACGGCTGAGCCT 909
||||||||| |||||||||
Sbjct 902 TGCAGAAATAACAGCTGAGCCT 923
Score = 276 bits (149), Expect = 4e-73
Identities = 173/184 (94%), Gaps = 3/184 (2%)
Strand=Plus/Plus
Query 904 GAGCCTCTGCAAATCGAGTCTGGAGTTT-AAATCTTATGGTAAGGATTTTGAGAGCTAAA 962
|||||||| || ||||| ||| |||||| ||||||| |||| |||||||| |||||||||
Sbjct 984 GAGCCTCTACAGATCGATTCTTGAGTTTAAAATCTTGTGGT-AGGATTTTCAGAGCTAAA 1042
Query 963 GTAAAGTTTTGTATATTTACTTTTCTACCATGTCTCAAGAGAGTCAAGAGCTGTATAACA 1022
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1043 GTAAAGTTTTGTATATTTACTTTTCTACCATGTCTCAAGAGAGCCAAGAGCTGTATAACA 1102
Query 1023 AATAGAATTAGTCCTATTTGAATGATGTTCTTC-TTTGTAGATCTTTTCTCTAATCTATT 1081
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1103 AATAGAGTTAGTCCTATTTGAATGATGTTCTTCGTTTGTAGATCTTTTCTCTAATCTATT 1162
Query 1082 TTTT 1085
||||
Sbjct 1163 TTTT 1166
> AT3G30122.1 | Symbols: | pseudogene similar to peptide chain
release factor protein | chr3:11758491-11760858 REVERSE LENGTH=2368
Length=2368
Score = 111 bits (60), Expect = 1e-23
Identities = 62/63 (98%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 387 GCTTGGTTTAGTGTCTAAAGACGAAGCCGTTCGAATGGCTGATGATGCTGAGCTTGATCT 446
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1016 GCTTGGTTTAGTGTCTAAAGACGAAGCCGTTCGAATGGCTGATGATGCTGAACTTGATCT 1075
Query 447 GGT 449
|||
Sbjct 1076 GGT 1078
Score = 75.0 bits (40), Expect = 1e-12
Identities = 42/43 (98%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 345 TAGGTCAGCTACTGTTAGGCTTATCGATGGACAACAAAACATG 387
|||||||||||||||||||||||||||||| ||||||||||||
Sbjct 888 TAGGTCAGCTACTGTTAGGCTTATCGATGGCCAACAAAACATG 930
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53162377155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5