BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481265
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24080.1 | Symbols: | Protein of unknown function (DUF295) ... 789 0.0
AT5G25300.1 | Symbols: | CONTAINS InterPro DOMAIN/s: F-box dom... 145 1e-33
> AT2G24080.1 | Symbols: | Protein of unknown function (DUF295)
| chr2:10237604-10238779 REVERSE LENGTH=1125
Length=1125
Score = 789 bits (427), Expect = 0.0
Identities = 634/730 (87%), Gaps = 30/730 (4%)
Strand=Plus/Plus
Query 360 CAAGAATGGAGACTATGTTGTTGTGTGGCAATTTGAGCAAGGCCAATTTTTAGGGTTTTG 419
||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 411 CAAGAATGGTGACTTTGTTGTTGTCTGGCAATTTGAGCAAGGCCAATTTTTAGGGTTTTG 470
Query 420 CAAGAAAGGGGATTTACATTACCGCGATATTCCAATACGGGTCGATGTTCGCAGGGAGTT 479
||||||||| |||||||||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 471 CAAGAAAGGAGATTTACATTACCGTGATATTCCAATACGTGTCGATGTTCGGAGGGAGTT 530
Query 480 CCGAGGCCTAAAAGATGTGGTGCTTAAAGGTTACAATCTTTAC-TCCCTGGTG-ACTCGT 537
|||||||||| ||||||||||||| || ||||||||||||||| | |||||| || |||
Sbjct 531 CCGAGGCCTACAAGATGTGGTGCTCAAGGGTTACAATCTTTACAT-TCTGGTGAAC-CGT 588
Query 538 AACTTCATTCGACACCTGGATTTGTCTGGTGGACAAGATGGTTTCAAGGATGTGTCCGTG 597
| ||||||||||||| | |||||||| |||||||||||||||||| |||||||||
Sbjct 589 AGCTTCATTCGACACATTGATTTGTC---CGGACAAGATGGTTTCAAGAATGTGTCCGAA 645
Query 598 ATCCCTAGGTTTCCAATGTGGATGCCAGATAC-GCCTAT-GGC-TGATTTTGG--GA-CA 651
| |||||||||||||| | || | | | | |||| | ||| |||||| || | |
Sbjct 646 ACCCCTAGGTTTCCAA--T--AT--CGGTTTCAGCCTTTGGGCGTGATTTAGGAATATCG 699
Query 652 GAAGGCAAAAAGGTCATCTCTTTTAGCGATAGAATTGCTGTTACAACATCAGGAGAGGTT 711
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 700 GAAATCAAAAAGGTCATCTCTTTTAGCGATAGCATTGCTGTTACAACATCAGGAGATGTT 759
Query 712 TTGTTGGTCTTTACCAAGGCTTACGAGCCTTTCTGTGAAAGGTCTAGGATCTTCCGCGTC 771
|||||||||||||||| ||||| |||| | || ||||||||||||||||||||| ||||
Sbjct 760 TTGTTGGTCTTTACCACGGCTTTCGAGTCACTCGGTGAAAGGTCTAGGATCTTCCACGTC 819
Query 772 TACAAGAGGGATCC---TAAAGAGCTAGACCCG-AATACAT-ACGACACTAGGCTTGTTG 826
|||||||||||||| ||||||||| | | |||| || || || || |||||||
Sbjct 820 TACAAGAGGGATCCGGAAAAAGAGCTA-AAAGGAAATATATGTGGA-ACCAGTCTTGTTG 877
Query 827 AGATGGAATCTATAGGTGATGAAGCCCTGTTTTTCGATTTGGGTATCACCGTGCCTGCTG 886
|| |||||||||||||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct 878 AGGTGGAATCTATAGGTGACGAGGCCCTGTTTTTCGATTTCGGTATCACCGTGCCTGCTG 937
Query 887 ACCTTACCCTTGGTATTGAGCCTAACTCCATCTATTTCACCCGTAGTGACCGTTTCGGTC 946
||| ||||||||||||||||||||| | |||||||||||| |||| ||||||||||||||
Sbjct 938 ACCATACCCTTGGTATTGAGCCTAATTGCATCTATTTCACTCGTAATGACCGTTTCGGTC 997
Query 947 ACAAGAACATTTGCATTCCATGCGTGA-TCGACATATGTGTGTACAACATTGCAACAAGG 1005
||||| || || |||||||||| | | ||||||||||||||||||||||||||||||||
Sbjct 998 ACAAGGACGGTTCCATTCCATGCCT-AGTCGACATATGTGTGTACAACATTGCAACAAGG 1056
Query 1006 ACCGTCAAACGCTTCCCCAATCTCTCCAACTTAAATCTCAAGGATGCGCA-GTGGTTTCT 1064
||| ||||||||||||| | ||| ||||||||||| ||||||||||| | |||||||||
Sbjct 1057 ACCTTCAAACGCTTCCCTAGTCTGTCCAACTTAAAACTCAAGGATGCT-ATGTGGTTTCT 1115
Query 1065 CCCCTCTTGA 1074
||||||||||
Sbjct 1116 CCCCTCTTGA 1125
Score = 459 bits (248), Expect = 3e-128
Identities = 303/330 (92%), Gaps = 2/330 (1%)
Strand=Plus/Plus
Query 35 CAAAACGAAGCGGGAGTCCTAAATATAATGAGTGTGCTAAGGCCCCGCGTGTGGATCCAA 94
|||||||||||||||||||||||||||||||| |||||||| |||| ||| |||||||||
Sbjct 50 CAAAACGAAGCGGGAGTCCTAAATATAATGAGCGTGCTAAGACCCCACGTCTGGATCCAA 109
Query 95 AAAGCGGATCTCCGATGCTGTTGTTGTCTCCAGAAGAGGGTGGTATTCGTGTGTGCAAGC 154
|| |||||||||| ||||||||||||||||||||||||||||| ||||| ||| |||||
Sbjct 110 AACTCGGATCTCCGTTGCTGTTGTTGTCTCCAGAAGAGGGTGGTTTTCGTCTGTACAAGC 169
Query 155 CAGACGAAGATATGTTTTACGAGACGACGACTGACTTTTCAGGGTATCGATTCCTGGCAA 214
|||||||||||| |||||||||||||| || |||||||||||||||||||||||| ||||
Sbjct 170 CAGACGAAGATAAGTTTTACGAGACGAAGAGTGACTTTTCAGGGTATCGATTCCTAGCAA 229
Query 215 GCTCGGGTAAGTGGTTCCTGGTGGTAGATTCTCGATCGGATCTCTATATCATAGATGTGT 274
||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||
Sbjct 230 GCTCGGGTAAGTGGTTCCTAGTGGTAGATTCTAGATGGGATCTCTATATCATAGATGTGT 289
Query 275 TTAGCGAGGATAGGATCCA-TCTTCCACCTTTAGAGTCAATCAACGGTGGCCTTTATATG 333
||||||| || |||||| | |||||||||| ||||||||| | | |||||||||||||||
Sbjct 290 TTAGCGATGAGAGGATC-AGTCTTCCACCTCTAGAGTCAACCCAGGGTGGCCTTTATATG 348
Query 334 GTTGAGCGAGTAGGATCTAATGAATTCAAG 363
|||||||||| |||||||||||| ||||||
Sbjct 349 GTTGAGCGAGAAGGATCTAATGACTTCAAG 378
> AT5G25300.1 | Symbols: | CONTAINS InterPro DOMAIN/s: F-box domain,
cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana
protein match is: F-box family protein with a domain
of unknown function (DUF295) (TAIR:AT5G25290.1); Has 285 Blast
hits to 224 proteins in 5 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 282; Viruses - 0; Other
Eukaryotes - 3 (source: NCBI BLink). | chr5:8780258-8783093
FORWARD LENGTH=1434
Length=1434
Score = 145 bits (78), Expect = 1e-33
Identities = 215/277 (78%), Gaps = 25/277 (9%)
Strand=Plus/Plus
Query 193 TCAGGGTA-TCGATTCCTGGCAAGCTCGGGTAAGTGGTTCCTGGTGGTAGATTCTCGATC 251
|||||| | ||||||| |||||| ||| | ||| |||||| ||||| |||||||||| ||
Sbjct 133 TCAGGG-ATTCGATTCTTGGCAAACTCAGTTAACTGGTTCTTGGTGCTAGATTCTCGTTC 191
Query 252 GGATCTCTATATCATAGATGTGTTTAGCGAGGATAGGATCCATCTTCCACCTTTAGAGTC 311
||||||||||||||||||||||||||||| | | |||| |||||||||| |||| ||
Sbjct 192 CAATCTCTATATCATAGATGTGTTTAGCGAGAAAAAGATCGATCTTCCACCCCTAGAATC 251
Query 312 AATCAACGG-TGGCCTTTATA-TGGTTGAGCGAGTAGGAT-CTA-ATGAATTCAAGAATG 367
|||||| | ||||||||||| | |||||| ||||||| | | | ||| ||||||
Sbjct 252 AATCAA-GAATGGCCTTTATAGTC-TTGAGCAAGTAGGAGACGAGAAGAAAA-AAGAAT- 307
Query 368 GAGACTATGTTGTTGTGTGGCAATTT-GAGCAA-GG--CC-AATTTTTAGGGTTTTGCAA 422
| | || | || |||||| ||| || ||| || || ||| | ||| ||||||||
Sbjct 308 -A--C-AT-T-GTAGTGTGGTT-TTTCGA-CAAAGGTACCGAATATATAGCCTTTTGCAA 359
Query 423 GAAAGGGGATT-TACATTACCGCGATATTCCAATACG 458
||| ||||| | ||||||||||| ||||| |||||
Sbjct 360 GAACGGGGAAGAT-CATTACCGCGACATTCCGATACG 395
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52610171160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5