BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481266
Length=714
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24090.1 | Symbols: | Ribosomal protein L35 | chr2:10241964... 1042 0.0
> AT2G24090.1 | Symbols: | Ribosomal protein L35 | chr2:10241964-10243614
FORWARD LENGTH=710
Length=710
Score = 1042 bits (564), Expect = 0.0
Identities = 668/717 (93%), Gaps = 11/717 (2%)
Strand=Plus/Plus
Query 1 ATCTTCTTCATCATCTC-TTCCTCAATCGGAGTGAGTACAAAAGATCCAAAAAATCGCCG 59
||||||||||||||||| |||||||||||||||||| ||||| || |||||| ||||||
Sbjct 1 ATCTTCTTCATCATCTCTTTCCTCAATCGGAGTGAGCGCAAAAAAT-CAAAAATTCGCCG 59
Query 60 AGAGCACAAACCCTAATGGCTTCTCTCTCAATGGCTTCCGTTAACGTTAGCTTCTGTCAT 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AGAGCACAAACCCTAATGGCTTCTCTCTCAATGGCTTCCGTTAACGTTAGCTTCTGTCAT 119
Query 120 CCTTTACGCTCTTCTTCTCCAAAGGTTTCACTTCGCAGTTCCGTTCAATTCGCGACGAGT 179
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 120 CCTTTACGCTCTTCTTCTCCAAAGGTCTCACTTCGCAGTTCCGTTCATTTCGCGACGAGT 179
Query 180 CTTGCTTCAAGTCACTCCATTTCTGGGCTTCGCGCTGTTTTTCCTCAGAAGATTTCTACA 239
||| | ||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 180 CTTTCCTCAAGTCACTCCATTTCTGGGCTTCGCGCTGTTTTGCCTCTGAAGATTTCTACA 239
Query 240 GTTGCTTCTCCCAATTCCCAAAAGTTTCAGTCTTTTACCGTTTTCGCTCATAAGGGTTAC 299
|||||||| |||||||| |||||| |||| |||||||||||||||||||||||||| |||
Sbjct 240 GTTGCTTCCCCCAATTCTCAAAAGCTTCATTCTTTTACCGTTTTCGCTCATAAGGGCTAC 299
Query 300 AA-ATTGAAGACCCACAAGGCCTCAGCGAAGCGGTTTAGGGTGACGGGTAGGGGGAAGAT 358
|| || |||||||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 300 AAGAT-GAAGACCCACAAGGCCTCAGCGAAGCGGTTCAGAGTGACGGGTAGAGGGAAGAT 358
Query 359 TGTGAGGAGGAGATCCGGAAAGCAGCATTTGTTAGCTAAGAAGAACAACAAGAGGAAATT 418
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TGTGAGGAGGAGATCTGGAAAGCAGCATTTGTTAGCTAAGAAGAACAACAAGAGGAAATT 418
Query 419 GCGTTTATCGAAAATGACCGAAGTGAACCGGAGCGACTATGACAATGTGATCGGCGCTCT 478
||| ||||||||||||| |||||||||||||||||||||||||| |||||||| |||||
Sbjct 419 ACGTCTATCGAAAATGACGGAAGTGAACCGGAGCGACTATGACAACGTGATCGGAGCTCT 478
Query 479 ACCATACTTGAAAGTCAATCGAAAGGCGACTTAAGCAGAATAAGCTTGATCCTTTTCTTA 538
|| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 479 GCCCTACTTGAAAGTCAATCGAAAGGCGACTTAAGCAGAGCAGGCTTGATCCTTTTCTTA 538
Query 539 CCTGCAATTCTCGTTTTGTAATCTAAAGTTGTGGTAATATCCTTTTGTATTGTGATATAA 598
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CCTGCAATTCTCATTTTGTAATCTAAAGTTGTGGTAATATCCTTTTGTATTGTGATATAA 598
Query 599 TTTGATCAATGAGTTGATTTT-GTTTCTTATTTGTGTCTCCTCTTGCTTGTCTCGCATGA 657
|||| |||||||||||||||| ||||| ||||||||||| || || ||||||||||||||
Sbjct 599 TTTGGTCAATGAGTTGATTTTTGTTTCATATTTGTGTCTTCTTTTTCTTGTCTCGCATGA 658
Query 658 CAGACAAAACAAGGCTAGGTGTAACATATACCTCATCAACGAGTTTGGTCATTGATC 714
|| || | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CA-ACTATTC-----TAGGTGTAACATATACCTCATCAACGAGTTTGGTCATTGATC 709
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34611327283
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5