BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481267
Length=1607
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24100.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2386 0.0
AT4G30780.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 490 2e-137
> AT2G24100.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G30780.1);
Has 101 Blast hits to 101 proteins in 16 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses
- 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr2:10244886-10246919
FORWARD LENGTH=1640
Length=1640
Score = 2386 bits (1292), Expect = 0.0
Identities = 1470/1553 (95%), Gaps = 24/1553 (2%)
Strand=Plus/Plus
Query 66 AACAATTTTCCGGTGAAGTTAGAGATCGTTGAAGATTTTCTTGAAGAAGAACACGCTCCT 125
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 93 AACAATTTTCCGGTGAAGTTAGAGATCATTGAAGATTCTCTTGAAGAAGAACACGCTCCT 152
Query 126 CTCAACAAACGATCAAAGATATGGAGCAACAATGGAACAAGTGTCTCTAAGTTTAGTCTA 185
|||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 153 CTCAACAAACGATCCAAGCTATGGAG---CAATGGAACAAGTGTCTCTAAGTTTAGTCTA 209
Query 186 CTTGAAGAGCCAAGTCCTTTGGGTTTGAGTTTAAAGAAGAGCCCATCTTTTCAAGAACTG 245
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 210 CTTGAAGAGCCAAGTCCTTTGGGGTTGAGTTTAAAAAAGAGCCCATCTTTTCAAGAACTG 269
Query 246 ATTCAGATGAAACTTTCTCAAAGTGGTGATGACACAAAGTCGGTTAAGAAAGAAAGTTTT 305
||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 270 ATTGAGATGAAACTTTCTCAAAGTGGTGATGACTCAAATTCGGTTAAGAAAGAAAGTTTT 329
Query 306 GG-TTT--TGGTATAGGAACCGTTGAGAAGCTTAAAGCTTCTAACTTTCCTGCTACGGTT 362
|| ||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 330 GGTTTTGGTGGTGTAGGAACCGTTGAGAAGCTTAAAGCTTCTAACTTTCCTGCTACTATT 389
Query 363 CTTAGGATTGGTCAATGGGAGTATAAGTCAAGGTATGAAGGTGATTTGGTGGCGAAATGT 422
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 CTCAGGATTGGTCAATGGGAGTATAAGTCAAGGTATGAAGGTGATTTGGTGGCGAAATGT 449
Query 423 TATTTTGCAAAGCATAAACTTGTATGGGAAGTGTTGGAACAAGGTCTTAAGAGCAAGATT 482
|| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 450 TACTTTGCAAAACATAAACTTGTGTGGGAAGTGTTGGAACAAGGTCTTAAGAGCAAGATT 509
Query 483 GAGATTCAGTGGTCTGATATTATGGCTTTGAAGGCTAATTTATCGGAAGATGAACCTGGA 542
||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||
Sbjct 510 GAGATTCAGTGGTCTGATATTATGGCTTTGAAGGCTAATTTGCCAGAGGATGAACCTGGA 569
Query 543 ACGCTGACTATCGTGCTGGCTAGGCGGCCGTTGTTTTTTAGGGAAACTAATCCGCAGCCT 602
|| |||||||| ||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 570 ACCCTGACTATTGTGCTGGCTAGGCGGCCATTGTTTTTCAGAGAAACTAATCCGCAGCCT 629
Query 603 AGAAAACATACTTTGTGGCAGGCGACATCGGATTTTACTGATGGTCAAGCCAGCATGAAC 662
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 630 AGAAAACATACTTTGTGGCAGGCGACATCGGATTTTACTGATGGTCAAGCTAGCATGAAC 689
Query 663 AGGCAACATTTTCTGCAGTGTGCCCCAGGGA-TATTGAATAAACATTTCGAGAAGCTTGT 721
||||||||||||||||||||| ||||||||| || |||| |||||||| |||||||||||
Sbjct 690 AGGCAACATTTTCTGCAGTGTCCCCCAGGGATTA-TGAACAAACATTTTGAGAAGCTTGT 748
Query 722 CCAATGTGATCATCGCTTGTTCTGTCTAAGCCGACAGCCAGAGATAAATTTGGCATCACC 781
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 749 TCAATGTGATCATCGCTTGTTCTGTCTAAGCCGGCAGCCAGAGATAAACTTGGCCGCACC 808
Query 782 GTTCTTTGATTCACGACAATCAATATTTGAGGATCCCTCAGTGTCTGGATCTCATAATAT 841
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 809 GTTCTTTGATTCACGACTATCTATATTTGAGGATCCCTCAGTGTCTGGATCTCATAATAT 868
Query 842 TGCATCTCCTGTTGGGGCTCAGTCGTCATCAGAACATGTGTCTCTATCTCATGACGCACT 901
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 869 TGCATCTCCTGTTGGGGCTCAGTCATCATCAGAACATGTGTCTCTATCTCATGACGCACT 928
Query 902 ATCGCCTAGCTCAGTGATGGATGCTCGTGCAATTGAAGGAGTTGGTGGTTCCGTTGATTC 961
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 929 ATCGCCTAGCTCAGTGATGGATGCTCGTGCAATCGAAGGAGTTGGTGGTTCCATTGATTC 988
Query 962 GAGGAATACAAACGGTTGGAGTCAGATAAAAATGCCTGGACTACACCAGTCTATCTCGAT 1021
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 989 GAGGAATACAAACGGTTGGAGTCAGATAAAAATGCCTGGACTACACCAATCTATCTCGAT 1048
Query 1022 GAACGATTTCCTTACGTTTTTGTCAGATCAAGCTTGTGAAAACAACCAAGAATTTGAGGA 1081
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1049 GAACGATTTCCTTACGTTTTTGTCAGATCAAGCTTGTGAAAACAACCAAGAGTTTGAGGA 1108
Query 1082 AATGAAACAGATACTGCTAAGTG---ACACTCAAACCGATCCATCGGATGAGAAGTCTGT 1138
|||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1109 AATGAAACAGTTACTGCTAAGTGACAACACTCAAACCGATCCATCTGATGAGAAGTCTGT 1168
Query 1139 CATGTCAAAGGTGAATTCTTTCTGCAACCTCTTGCAATCTGCTGCAAATTCACATCTCAA 1198
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1169 CATGTCAAAGGTGAATTCTTTCTGCAACCTCTTGCAATCTGCTGCAAACTCACAGCTCAA 1228
Query 1199 TATCGAAAATGCTGACACCGGTAAAGAG--ATTGGGGTCGATAACAATAGTAGACACATG 1256
|||||||| |||||| ||| | |||||| |||||||||||||| | | ||||||||||
Sbjct 1229 TATCGAAACTGCTGATACC-G-AAAGAGTTGTTGGGGTCGATAAC-A-A-TAGACACATG 1283
Query 1257 ACCGAAGGAGGCAAAAGAGTTGTTGATCCTGCTTCAAGCAGCAAGCCACTACAGGGGATG 1316
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1284 CCCGAAGGAGGCAAAAGAGTTGTTGACCCTGCTTCAAGCAGCAAGCCACTACAAGGGATG 1343
Query 1317 TCAAGGAAAGACTCATTCAGTGATTTGCTGGTACACCTTCCTCGGATCACATCCCTCCCA 1376
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 1344 TCAAGGAAAGACTCATTCAGTGATTTGCTGGTGCACCTTCCTCGAATCACATCACTCCCA 1403
Query 1377 AAGTTCTTGTTCAACATTTCAGAAGAAGACTAGTAGATAGTGAACCGAAAAGTTCTTGTT 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1404 AAGTTCTTGTTCAACATTTCAGAAGAAGACTAGTAGATAGTGAACCGAAAAGTTCTTGTT 1463
Query 1437 CTAGGAATCTTGAACAAGTAGCTGTAAATCGAATTATCTCTCTAGCTCGTTCATAAGGAT 1496
|||||||||||||||||||||||||||||| |||||||||||| | |||| |||||||
Sbjct 1464 CTAGGAATCTTGAACAAGTAGCTGTAAATCAAATTATCTCTCT--C--GTTCTTAAGGAT 1519
Query 1497 TTGGAGGAACTTTTGTGTTTGATGATGAATCCTTGTAAAGAAATGCTTTTGTGATGGCGT 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1520 TTGGAGGAACTTTTGTGTTTGATGATGAATCCTTGTAAAGAAATGCTTTTGTGATGGCGT 1579
Query 1557 TTTCTAAAAGCCATTT-TGTTTT-GAGACATTAACAAAACTTTAATATTGCTT 1607
|||||||||||||||| | |||| || ||||||||||||||||| ||||||||
Sbjct 1580 TTTCTAAAAGCCATTTCTTTTTTTGAAACATTAACAAAACTTTATTATTGCTT 1632
Score = 100 bits (54), Expect = 3e-20
Identities = 61/64 (95%), Gaps = 2/64 (3%)
Strand=Plus/Plus
Query 1 ACTCTCTTAGATTCTCAGGGTTTTGTGATTTTTT-CATGGTGGAGATGATGAGATCAGAG 59
||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1 ACTCTCTTAGATTCTCAGGGTTTTGTG-TTTTTTGGATGGTGGAGATGATGAGATCAGAG 59
Query 60 AATC 63
||||
Sbjct 60 AATC 63
> AT4G30780.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G24100.1);
Has 109 Blast hits to 109 proteins in 18 species: Archae -
0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 95; Viruses
- 0; Other Eukaryotes - 13 (source: NCBI BLink). | chr4:14990341-14993069
FORWARD LENGTH=2166
Length=2166
Score = 490 bits (265), Expect = 2e-137
Identities = 423/499 (85%), Gaps = 12/499 (2%)
Strand=Plus/Plus
Query 325 TTGAGAAGCTTAAAGCTTCTAACTTTCCTGCTACGGTTCTT-AGGATTGGTCAATGGGAG 383
|||||||||| ||||||||||||||||||||| || || || | ||| || || ||||||
Sbjct 580 TTGAGAAGCTGAAAGCTTCTAACTTTCCTGCTTCGCTT-TTGAAGATCGGGCAGTGGGAG 638
Query 384 TATAAGTCAAGGTATGAAGGTGATTTGGTGGCGAAA-TGTTATTTTGC-AAAGCATAAAC 441
||||| || ||||||||||||||||||||||| ||| ||||| ||||| ||| || ||||
Sbjct 639 TATAAATCGAGGTATGAAGGTGATTTGGTGGC-AAAGTGTTACTTTGCTAAA-CACAAAC 696
Query 442 TTGTATGGGAAGTGTTGGAACAAGGTCTTAAGAGCAAGATTGAGATTCAGTGGTCTGATA 501
|||| ||||||||||||||||||||||||||||| || || ||||| |||||||| ||||
Sbjct 697 TTGTTTGGGAAGTGTTGGAACAAGGTCTTAAGAGTAAAATCGAGATCCAGTGGTCAGATA 756
Query 502 TTATGGCTTTGAAGGCTAATTTATCG-GAAGATGAACCTGGAACGCTGACTATCGTGCTG 560
|||||||||||||||| || | || ||||| | ||||||||| ||||| |||||||
Sbjct 757 TTATGGCTTTGAAGGCAAACTG-TCCTGAAGACGGACCTGGAACTTTGACTCTCGTGCTT 815
Query 561 GCTAGGCGGCCGTTGTTTTTTAGGGAAACTAATCCGCAGCCTAGAAAACATACTTTGTGG 620
||||| | ||| || ||||| ||||||| || || ||||||||||| ||||| ||||||
Sbjct 816 GCTAGACAGCCCTTATTTTTCCGGGAAACAAACCCACAGCCTAGAAAGCATACCTTGTGG 875
Query 621 CAGGCGACATCGGATTTTACTGATGGTCAAGCCAGCATGAACAGGCAACATTTTCTGCAG 680
||||||||||| ||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct 876 CAGGCGACATCAGATTTCACTGATGGCCAAGCCAGCATGAACAGGCAGCATTTTCTGCAA 935
Query 681 TGTGCCCCAGGGATATTGAATAAACATTTCGAGAAGCTTGTCCAATGTGATCATCG-CTT 739
||||| | ||||||| |||| |||||||| || ||||| || |||||||||||||| ||
Sbjct 936 TGTGCTCAAGGGATAATGAACAAACATTTTGAAAAGCTCGTTCAATGTGATCATCGTCT- 994
Query 740 GTTCTGTCTAAGCCGACAGCCAGAGATAAAT-TTGGCATCACCGTTCTTTGATTCACGAC 798
|||| ||||||||||||||| |||||| | ||| | || || | ||||||| |||| |
Sbjct 995 GTTCCATCTAAGCCGACAGCCGGAGATAGCTATTGAC-TCTCCCTACTTTGATGCACGGC 1053
Query 799 AATCAATATTTGAGGATCC 817
|||| || |||||||||||
Sbjct 1054 AATCTATTTTTGAGGATCC 1072
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79367061645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5