BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481270
Length=1146
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24140.1 | Symbols: | Protein of unknown function, DUF593 |... 1515 0.0
AT4G30830.1 | Symbols: | Protein of unknown function, DUF593 |... 86.1 7e-16
> AT2G24140.1 | Symbols: | Protein of unknown function, DUF593
| chr2:10262554-10264033 REVERSE LENGTH=1157
Length=1157
Score = 1515 bits (820), Expect = 0.0
Identities = 1056/1165 (91%), Gaps = 35/1165 (3%)
Strand=Plus/Plus
Query 1 ACATCTTTCTGAGCCAATTTTGGGGACTAGCTCGTCGACAAAACTCGTGTTCTTTTACAA 60
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 9 ACATCTTTCTGAGCCAAATTTGGGGACTAGCTCGTCGACAAAACTCGTGTTCTTCTACAA 68
Query 61 ATTTTCCAAGAGACTTGAGGAAGAGTTGGATGCTGAGAGAGAAGCTACTGCTACATCAGC 120
| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 69 A-TTTACAAGAGACTTGAGGAAGAGTTGGATGCTGAGAGAGAAGCTACTGCTACGTCAGC 127
Query 121 GAGCGAAGCCATGTCCGTGATACTTAGGCTACAAGGCGAGAAAGCGATGCTTGCTATGGA 180
||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 128 GAGTGAAGCCATGTCTGTGATACTTAGGCTACAAGGCGAGAAAGCGTTGCTTGCTATGGA 187
Query 181 AGCTAGCCAGTACAAGAGAATGGTTGAGGAGAGAATGTCACTTGCCGAGTTGTCGCTGGA 240
||||||||||||||||||||||||||||||||||||||| | || |||||||| ||||
Sbjct 188 AGCTAGCCAGTACAAGAGAATGGTTGAGGAGAGAATGTCTCATGTTGAGTTGTCAATGGA 247
Query 241 GCTTTTGGAGGATTTGAATTACCAGAAAGATGTTGAAATCAAGAATCTTGAGTGTGAATT 300
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 248 GCTTTTGGAGGATTTGAATTACCAGAAAGAAGTTGAAATCAAGAATCTTGAGTGTGACTT 307
Query 301 ACATTCTTATAGATGTAAGCTTATGAGTTTGGGATGGAGTGGACTTGATGATGAGGATTG 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 ACATGCTTATAGATGTAAGCTTATGAGTTTGGGATGGAGTGGACTTGATGATGAGGATTG 367
Query 361 TATGAGATTTTGCGATAGGTCTCAAACACCGTCTCCAGAACCGATTGAGACAGTTCCTGT 420
||| |||||||||||||| ||||||||||||||||||||||||| |||||| |||| |||
Sbjct 368 TATTAGATTTTGCGATAGATCTCAAACACCGTCTCCAGAACCGAATGAGACGGTTCTTGT 427
Query 421 GGAGAAGGGAGTTATAGAGCAGAGCTTGGATTCAAGGAA-AGATAAAGAGAAGAATTTAG 479
||||||||| |||||||||||||||||||||||||| || |||| | |||||||||||||
Sbjct 428 GGAGAAGGGTGTTATAGAGCAGAGCTTGGATTCAAG-AAGAGATCATGAGAAGAATTTAG 486
Query 480 ATTTGAATTGGGATCAGATCAAGAAGCTGGATGAGCAGTTGAAAGAGCTTACGGATTTTC 539
||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 487 ATTTGAATTGGGAAAAGATCAAGAAGGTGGATGAGCAGTTGAAAGAGCTTACAGATTTTC 546
Query 540 GAGATTCTATAAGAGATCAATACAAGACTTTGAAGCAGGAGACAAGTTCTGTGTCTGAAA 599
|||||||| |||||||||||||||||| ||||||||||||||||| |||||| |||||||
Sbjct 547 GAGATTCTGTAAGAGATCAATACAAGATTTTGAAGCAGGAGACAACTTCTGTTTCTGAAA 606
Query 600 CTAAGAATGGAGAAAAGGGTTTGTGTAAAACTGATTTGTTCGTGAAAAAGATGTCCAAGA 659
|||||||||| ||||| ||| |||||||| |||||||||| |||||||||||||||||||
Sbjct 607 CTAAGAATGGGGAAAAAGGTATGTGTAAACCTGATTTGTTGGTGAAAAAGATGTCCAAGA 666
Query 660 AATCATCAAAACAGAAAAGAGATAAAAGCGTCAAGAGAGATCATA-CACGGGGAAGTTGT 718
|||||| |||||||||||||||||||| ||||||||||||| | ||| |||||||||
Sbjct 667 AATCATTGAAACAGAAAAGAGATAAAAGTATCAAGAGAGATCA-AGCACTAGGAAGTTGT 725
Query 719 TCCACAAACGATGCAGAGTGTCA-GACCGAGTTGCAGCGGTTGAAAGAGAGAGTAGAGCT 777
|| |||| |||||||||| ||| | ||||||| |||||||||| |||| |||||||||
Sbjct 726 TCTGCAAATGATGCAGAGTATCAAG-CCGAGTTACAGCGGTTGAGAGAGCGAGTAGAGC- 783
Query 778 G-CTCGAGCAGGAGAGATGCAACACAGAGCCATCTCAAACTAGTGGAGTAAATCAACAAA 836
| || ||||||||||||||||||| ||||||| |||||||||||||||||| |||| |||
Sbjct 784 GACTAGAGCAGGAGAGATGCAACAAAGAGCCAGCTCAAACTAGTGGAGTAAGTCAAGAAA 843
Query 837 ATATGAATCTGCAGAGAAATTCAGAAGAAGAGTTAAGTTCTGTGCAATCTGCAATGTTAA 896
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
Sbjct 844 ATATGAATCTGCAGAGAAAATCAGAAGAAGAGTTAAGTTCTATGCAATCTGCAATGTTTA 903
Query 897 GTTATGACTCAGCTATTATTTCTGTTCAAGAGGCAATGCTTTACTTCTGGCTATGAGACA 956
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 GTTATGACTCAGCTATTGTTTCTGTTCAAGAGGCAATGCTTTACTTCTGGCTATGAGACA 963
Query 957 CGCCTTTCGTCTCTGGAGTTGACGGCGTTAGAGCTAGTTCATTATGATAT-C---TA-C- 1010
| ||| ||||| | | |||||||||| ||||||| |||| || || || | | || |
Sbjct 964 C-CCTCTCGTC-CAG-AGTTGACGGCTTTAGAGCGAGTT-ATGAT-ATCTACAAATAGCG 1018
Query 1011 A----A----ATAGAAAAGTATACAAACTTTGAGAACATTATAGTGTTATACTAAGATTA 1062
| | |||||||||||||||||| |||||||| |||||||| |||| ||||||||
Sbjct 1019 AGTTGATTTTATAGAAAAGTATACAAACCTTGAGAACCTTATAGTGATATATTAAGATTA 1078
Query 1063 GTTAAAGGGCGTGATTAA-TATTGTACTTGCATTCGTTTTTTGTTTCAAGTAAGATCCAC 1121
||| | | ||||| ||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1079 GTTT--GT-C---ATTAAATATTGTACTTGCATTCGTTTTTTGTTTGAAGTAAGATTCAC 1132
Query 1122 ATCTTGTGTAAAGTTTGAGCCTTTG 1146
||||||||||||||||||| |||||
Sbjct 1133 ATCTTGTGTAAAGTTTGAGACTTTG 1157
> AT4G30830.1 | Symbols: | Protein of unknown function, DUF593
| chr4:15015267-15016977 REVERSE LENGTH=1489
Length=1489
Score = 86.1 bits (46), Expect = 7e-16
Identities = 46/46 (100%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 911 ATTATTTCTGTTCAAGAGGCAATGCTTTACTTCTGGCTATGAGACA 956
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 ATTATTTCTGTTCAAGAGGCAATGCTTTACTTCTGGCTATGAGACA 1254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56224610400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5