BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481271
Length=1098
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24150.1 | Symbols: HHP3 | heptahelical protein 3 | chr2:102... 1784 0.0
AT4G30850.1 | Symbols: HHP2 | heptahelical transmembrane prote... 459 3e-128
> AT2G24150.1 | Symbols: HHP3 | heptahelical protein 3 | chr2:10265484-10267405
REVERSE LENGTH=1243
Length=1243
Score = 1784 bits (966), Expect = 0.0
Identities = 1057/1101 (96%), Gaps = 5/1101 (0%)
Strand=Plus/Plus
Query 1 CGGAGCATGAAGAGACGAAGAGCGGCGAAGAAATCTCCGGCGATGGTGACGGTTACCGAT 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 55 CGGAGCATGAAGAGACGAAGATCGGCGAAGAAATCTCCGGCGATGGTGACGGTTACCGAT 114
Query 61 TGTAAAGGGTTAGATTCCGGCGAAGAGACGAGACTCGTAAGGAGATTGATGAAGTTCGAA 120
|| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 115 TGGAAAGGGTTAGATTGCGGCGAAGAGACGAGAATCGTAAGGAGATTGATGAAGTTCGAA 174
Query 121 GACTTGCCTGAGTATTTGAAGGACAACGAGTTTATACACAACCATTATCGATGTCAATGG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 GACTTGCCTGAGTATTTGAAGGACAACGAGTTTATACACAACCATTATCGATGTCAATGG 234
Query 181 TCTCTCAAAGATACTTTTCTCAGTGCTTTCTCTTGGCACAACGAAACTCTCAACATTTGG 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 235 TCTCTCAAAGATACTTTTCTCAGTGCTTTCTCTTGGCACAACGAGACTCTCAACATTTGG 294
Query 241 ACGCATTTA-TTCGGATTTG-TGATATTTCTGTGGATGACGGTGGTGAGTTGCTTGGAGA 298
||||||||| || ||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 295 ACGCATTTAATT-GGATTTGGT-ATATTTCTGTGGATGACGGTGGTGAGTTGCTTGGAGA 352
Query 299 CGACGGAGCTTAGTCTCACCGGCGTTTTTAACGGCATGTCCGGAGTGAGGATTTGCCTCT 358
|||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 353 CGACGGAGATTAGTCTCGCCGGCGTTTTTAACGGCATGGCCGGAGTGAGGATTTGCCTCT 412
Query 359 CAAGCAATGAGACTCTGATTCATGATTCGAACGTGACACAACACATCTCATGTCTTACCT 418
|||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 413 CAAGCAATCAGACTCTGCTTCATGATTCGAACGTGACACATCACATCTCATGTCTTACCT 472
Query 419 CTCAAGGAGAAGCTATTCCAAAATGGCCATGGCTCGTGTACTTAGTCGGAGCAATGGGTT 478
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 473 CACAAGGAGAAGCTATTCCAAAATGGCCGTGGCTCGTGTACTTAGTCGGAGCAATGGGTT 532
Query 479 GTTTAATCTGCAGCTCTGTTTCACACCTCCTCGCTTGTCACTCAAAACGTTTCAACCTCT 538
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 533 GTTTAATCTGCAGCTCTGTTTCACACCTCCTTGCTTGTCACTCAAAACGTTTCAACGTCT 592
Query 539 TCTTCTGGCGTTTAGACTACGCAGGAATATCTCTCATGATCGTTGCTTCTTTCTTTGCAC 598
||||||||||||| ||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct 593 TCTTCTGGCGTTTGGACTACGCAGGAATATCACTTATGATCGTCGCTTCTTTCTTTGCAC 652
Query 599 CAATCTACTACGCATTCTCTTGCCACCCTAACTTCCGTTTACTCTACTTGtcctcgatct 658
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 653 CAATCTACTACGCATTCTCCTGCCACCCTAACTTCCGTTTACTCTACTTATCCTCGATCT 712
Query 659 cgatcctcggtctccttgctatcatcactctcctctctcctggtctctctACACCGCGTT 718
|||||||||||||||| ||||||||||||||||||||||| | ||||||||| |||||||
Sbjct 713 CGATCCTCGGTCTCCTCGCTATCATCACTCTCCTCTCTCCCGCTCTCTCTACGCCGCGTT 772
Query 719 TTAGACCTTTCAGAGCTAATCTTTTCCTTGCAATGGGATCATCTGCTGTGATACCTGCTA 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 TTAGACCTTTCAGAGCTAATCTTTTCCTTGCAATGGGATCATCTGCTGTGATACCTGCTA 832
Query 779 CACATGTGCTTTGCCTTTACTGGGATCATCCTAACGTATTCATCGCCCTCGGTTACGAGA 838
|||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 833 CACATGTGCTTTGCCTTTACTGGGATCACCCTAATGTCTTCATCGCCCTCGGTTACGAGA 892
Query 839 TTGCCACAGCCTTGTCGTATTTTGTGGGAGCAACGTTTTATGTTAGCCGTGTGCCTGAGA 898
||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 893 TTGCCACGGCTTTGTCGTATTTTGTGGGAGCAACGTTTTATGTCAGCCGTGTGCCTGAGA 952
Query 899 GATGGAAGCCTGGAGCGTTTGATATGGCTGGACATAGCCATCAGATATTCCATGTGTTTG 958
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 953 GATGGAAGCCTGGAGCGTTTGATATGGCGGGACATAGCCATCAGATTTTCCATGTGTTTG 1012
Query 959 TAGTTTTTGGTGCTCTTGCTCATTGTGTCACCACTCTTCTCATCATTGATTTTTCACTGG 1018
||||| | |||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1013 TAGTTATGGGTGCTCTTGCTCATTGTGTTACCACTCTTCTCATCATTGATTTTTCACGGG 1072
Query 1019 CTTCCCCTTCTTGTGGGTTTTAGCAAGAAGATATTGTT-AGTAAGCTTATGTGATCTTGC 1077
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1073 CTTCCCCTTCTTGTGGGTTTTAGCAAGAAGATATTGTTTAGTAAGCTTCTGTGATCTTGC 1132
Query 1078 ATTTCGATGTATGTGATCTTG 1098
||||||||||||||||||||
Sbjct 1133 GTTTCGATGTATGTGATCTTG 1153
> AT4G30850.1 | Symbols: HHP2 | heptahelical transmembrane protein2
| chr4:15020415-15022445 REVERSE LENGTH=1369
Length=1369
Score = 459 bits (248), Expect = 3e-128
Identities = 505/627 (81%), Gaps = 26/627 (4%)
Strand=Plus/Plus
Query 427 GAAGCTATTCCAAAATGGCCATGGCTCGTGTACTTAG-TCGGAGCAATGGGTTGTTTAAT 485
||||| ||||| |||||||||||||| |||| ||| | |||||||||||| || || ||
Sbjct 630 GAAGCCATTCCGAAATGGCCATGGCTTGTGTTCTT-GACCGGAGCAATGGGCTGCTTGAT 688
Query 486 CTGCAGCTCTGTTTCACACCTCCTCGCTTGTCACTCAAAACGTTTCAACCTCTTCTTCTG 545
|||||| || | ||||||||| |||| |||||||| | ||| |||||||||||||||||
Sbjct 689 CTGCAGTTCCATGTCACACCTCTTCGCCTGTCACTCCAGACGGTTCAACCTCTTCTTCTG 748
Query 546 GCGTTTAGACTACGCAGGAATATCTCTCATGATCGT-TGCTTCTTTCTTTGCACCAATCT 604
|||| |||||||||| ||||| || ||||||||||| || ||| ||||| ||||| ||||
Sbjct 749 GCGTCTAGACTACGCTGGAATCTCCCTCATGATCGTCTG-TTCATTCTTCGCACCTATCT 807
Query 605 ACTACGCATTCTCTTGCCACCCTAACTTCCGTTTAC-TCTACTTGtcctcgatctcgatc 663
|||| |||||||| |||||| || ||| || | | ||||| | || |||||||| |||
Sbjct 808 ACTATGCATTCTCATGCCACACTTACTGGCGACT-CTTCTACCTCTCATCGATCTCAATC 866
Query 664 ctcggtctccttgctatcatcactctcctctctcctggtctctct-A-CACCGCGTTTTA 721
||||||||||| || ||| |||||||||||||||| || |||| | | || ||||| |
Sbjct 867 CTCGGTCTCCTCGCCATCTTCACTCTCCTCTCTCC--ATCACTCTCAGCTCCACGTTTCA 924
Query 722 GACCTTTCAGAGCTA-ATCTTTTCCTTGCAATGGGATCATCT-GCTGTGATACCTGCTAC 779
|| |||||||||| | ||| ||||| ||||||||| ||| || || ||||| || ||
Sbjct 925 GATCTTTCAGAGC-AGCTCTGTTCCTAACAATGGGATTTTCTGGC-GTAATACCAGCCAC 982
Query 780 ACATGTGCTTTGCCTTTACT-GGGATCATCCTAACGT-ATTCATCGCCCTCGGT-TACGA 836
||||||||||| |||| | | |||||| || ||||| || || || ||| || || ||
Sbjct 983 ACATGTGCTTTACCTTCA-TAAGGATCACCCAAACGTGCTT-ATAGCTCTC-GTATATGA 1039
Query 837 GA-TTGCCACAGCCT-TGTCGTATTTTGTGGGAGCAACGTTTTATGTTAGCCGTGTGCCT 894
| |||| | | || ||| |||| |||||| |||||||||||| ||| | |||
Sbjct 1040 -ACTTGCGA-TGGCTGTGTTGTATGCAACAGGAGCAGCGTTTTATGTTACCCGCATACCT 1097
Query 895 GAGAGATGGAAGCCTGGAGCGTTTGATATGGCTGGACATAGCCATCAGATATTCCATGTG 954
|| |||||||||||||| || |||||||| || |||||||||||||||||||||||||||
Sbjct 1098 GAAAGATGGAAGCCTGGGGCTTTTGATATTGCAGGACATAGCCATCAGATATTCCATGTG 1157
Query 955 TTTGTAGTTTTTGGTGCTCTTGCTCATTGTGTCACCACTCTTCTCATCATTGATTTTTC- 1013
|||||||| || || |||||||||||| |||| ||| |||||| ||||| |||||| |
Sbjct 1158 TTTGTAGTCTTAGGAGCTCTTGCTCATAGTGTTGCCAGTCTTCTTATCATGGATTTT-CG 1216
Query 1014 ACTGGCTTCCCCTTCTTGTGGGTTTTA 1040
|| |||||| |||||||||| |||||
Sbjct 1217 ACGGGCTTCTCCTTCTTGTGCCTTTTA 1243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53814984240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5