BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481272
Length=2183
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24170.1 | Symbols: | Endomembrane protein 70 protein famil... 3406 0.0
> AT2G24170.1 | Symbols: | Endomembrane protein 70 protein family
| chr2:10274144-10277266 REVERSE LENGTH=2382
Length=2382
Score = 3406 bits (1844), Expect = 0.0
Identities = 2076/2186 (95%), Gaps = 23/2186 (1%)
Strand=Plus/Plus
Query 1 AAATCGTCCAATTGCCATGTTTCTTCCCACTCTCTTCTCCTTCATATAAGAAATTTCACT 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 214 AAATCGTCCAATTGCCATGTTTCTTCCCACTCTCTTCTCCTTCATTTAAGAAATTTCACT 273
Query 61 CTACGAAGAAGACAAAGACGAAATCGAGCTAATCCATGGCGAAAGTTCGGATTTTGATCT 120
|| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 274 CTCCGAAGAAG---AAGACGAAATCGAGCAAATCCATGGCGAAAGTTCGGATTTTGATCT 330
Query 121 TCACCCTTTTCGTCTTCTTCTTCCTCAATGTCAATATCCATGGATTTTACCTTCCTGGTG 180
|||||||| || | ||||||| |||||||||| |||||||||||||||||||||| || |
Sbjct 331 TCACCCTTGTCTTATTCTTCTCCCTCAATGTCCATATCCATGGATTTTACCTTCCCGGCG 390
Query 181 TCGCTCCTCAAGATTTCCAAATGGGTGATGCATTGATGGTGAAAGTTAATAAATTGACAT 240
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 391 TCGCTCCACAAGATTTCCAAATGGGAGATGCATTGATGGTGAAAGTTAATAAATTGACAT 450
Query 241 CTACAAAGACTCAGCTTCCATATTCCTACTATTCTCTTCCTTATTGTCGTCCTGAACATA 300
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 451 CTACAAAGACTCAGCTTCCATATTCCTATTATTCTCTTCCTTATTGTCGTCCAGAACATA 510
Query 301 TTGTTGATAGTGCTGAGAATCTCGGTGAAGTTCTTCGTGGTGATCGAATTGAGAACTCTC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 TTGTTGATAGTGCTGAGAATCTCGGTGAAGTTCTTCGTGGTGATCGAATTGAGAACTCTC 570
Query 361 CCTTTGTGTTTAAAATGAGGGAGTCGCAGATGTGCGCTGCGGTTTGTCGAGTGAAGCTTG 420
| |||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 571 CTTTTGTGTTTAAAATGAGGGAATCGCAGATGTGTGCTGCGGTTTGTCGTGTGAAGCTTG 630
Query 421 ATAAGAAAACCGCCAAGGCGTTAAAGGAGAAGATTGCTGATGAGTATCGGGTTAACATGA 480
||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 631 ATAAGAAAACCGCAAAGGCGTTTAAGGAGAAGATTGCTGATGAATATCGAGTTAACATGA 690
Query 481 TTTTGGACAACCTTCCATTAGTTGTTCCGGTGCAAAGGCCAGATCAGGACAATGTTGTAG 540
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 TTTTGGACAACCTTCCCCTAGTTGTTCCGGTGCAAAGGCCAGATCAGGACAATGTTGTAG 750
Query 541 TGTATCAGCATGGTTTCCATGTTGGTCTCAAGGGAATCTTTGCTGGTAAAAAGGAGGAAA 600
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 751 TGTATCAGCATGGTTTCCATGTTGGTCTCAAGGGAATCTTTGCTGGCAAAAAGGAGGAGA 810
Query 601 AGTATTTTATCCACAACCACTTGACCTTCACTGTTAGGTATCACAGAGATATACAGACCG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 AGTATTTTATCCACAACCACTTGACCTTCACTGTTAGGTATCACAGAGATATACAGACCG 870
Query 661 ATTCTTCAAGAATCGTCGGCTTTGAAGTCAAGCCGTTCAGTGTCAAGCATGAATATGAAG 720
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 871 ATTCTTCAAGAATCGTTGGCTTTGAAGTCAAGCCGTTCAGTGTCAAACATGAATATGAAG 930
Query 721 GTCAATGGAATGAAAAGGCTCGGTTAACGACATGTGATCCACATACAAAGCGTGCAGTCA 780
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 931 GTCAATGGAATGAAAAGGCTCGGTTAACGACTTGTGATCCGCATACAAAGCGTGCAGTCA 990
Query 781 CTAACTCTGAGTCTCCTCAGGAGGTCGAAGAAGGGAACGAGATTATATTCACATATGATG 840
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 991 CTAACTCTGAGTCTCCTCAGGAGGTTGAAGAAGGGAACGAGATTATCTTCACATATGATG 1050
Query 841 TTGATTTCCAGGAGAGTGAGGTGAAATGGGCGTCTAGGTGGGACACTTACCTTCTCATGG 900
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1051 TTGACTTCCAGGAAAGTGAGGTGAAATGGGCGTCTAGGTGGGACACTTACCTTCTAATGG 1110
Query 901 CTGATGATCAGATTCATTGGTTCTCAATCGTTAATTCCATGATGATTGTTCTTTTTCTCT 960
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1111 CTGATGATCAGATTCATTGGTTCTCAATCGTTAATTCTATGATGATTGTTCTTTTCCTCT 1170
Query 961 CTGGTATGGTTGCTATGATCATGCTAAGAACACTCTACCGAGATATTTCCAACTACAATC 1020
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1171 CTGGTATGGTCGCTATGATCATGCTAAGAACACTCTACCGAGATATTTCCAACTACAATC 1230
Query 1021 AGTTAGAGACTCATGAAGAGGCCCTCGAAGAGACGGGTTGGAAATTGGTACACGGAGATG 1080
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1231 AGTTAGAGAGTCATGAAGAGGCCCTCGAAGAGACGGGTTGGAAATTGGTACACGGAGATG 1290
Query 1081 TTTTCAGACCGCCAACAAATCCGGAGTTGCTCTGTGTCTACGCAGGCACTGGAGTTCAAT 1140
||||||||||||||||||| ||||||||||| ||||| || |||||||||||||||||||
Sbjct 1291 TTTTCAGACCGCCAACAAACCCGGAGTTGCTTTGTGTTTATGCAGGCACTGGAGTTCAAT 1350
Query 1141 GCTTTGGAATGATTCTTGTCACCATGATCTTCGCGTGTCTTGGCTTTTTATCCCCTTCAA 1200
||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||
Sbjct 1351 GCTTTGGAATGATTCTTGTCACCATGATCTTTGCTTGTCTTGGCTTTTTATCTCCTTCAA 1410
Query 1201 ACCGTGGTGGTCTTATGACGGCTATGCTTTTGCTTTGGGTATTCATGGGACTATTGGTAG 1260
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1411 ACCGTGGTGGTCTTATGACGGCTATGCTTTTGCTTTGGGTTTTCATGGGACTATTGGCAG 1470
Query 1261 GATACGTGTCTTCACGCCTCTACAA-ATCTTTACGAGGAACCGAATGGAAGAA-AATCGC 1318
|||||| |||||||||||||||||| | | ||| |||||||||||||||| || || |||
Sbjct 1471 GATACGCGTCTTCACGCCTCTACAAGA-CGTTAAGAGGAACCGAATGGAA-AAGAAACGC 1528
Query 1319 TCTGAAAACCGCATTCATGTTTCCCGCTACCATCTTTGTCACCTTCTTTGTTCTGAATGC 1378
||||||||||||||||||||||||||||||| |||||||| |||||||||| || |||||
Sbjct 1529 TCTGAAAACCGCATTCATGTTTCCCGCTACCGTCTTTGTCGCCTTCTTTGTCCTTAATGC 1588
Query 1379 CATAATCTGGGGACAAAAATCATCTGGGGCTGTTCCATTTGGTACAATGTTTGCTTTGGT 1438
||||||||||||||||||||||| || || || ||||||||||||||||||||||||||
Sbjct 1589 GATAATCTGGGGACAAAAATCATCCGGTGCAGTCCCATTTGGTACAATGTTTGCTTTGGT 1648
Query 1439 CGTCCTCTGGTTTGGTATCTCTGTTCCACTTGTCTTCATCGGTGGCTACATTGGTTTCAG 1498
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1649 TGTCCTCTGGTTTGGTATCTCTGTTCCACTTGTTTTCATCGGTGGCTACATTGGTTTCAG 1708
Query 1499 AAAACCTGCACCGGAAGATCCAGTGAAAACCAACAAGATTCCGAGGCAGATCCCAATACA 1558
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||
Sbjct 1709 AAAACCTGCACCGGAAGATCCAGTGAAAACCAACAAGATCCCGCGGCAGATCCCAACACA 1768
Query 1559 GGCCTGGTACATGAACCCAATATTCTCCATTTTGATTGGAGGCATTCTCCCATTCGGCGC 1618
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1769 GGCCTGGTACATGAACCCAATCTTCTCCATTTTGATTGGAGGCATTCTCCCATTTGGCGC 1828
Query 1619 AGTCTTCATCGAGCTCTTCTTCATACTCACCTCGATATGGCTACACCAATTCTACTACAT 1678
||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 1829 AGTCTTCATCGAGCTCTTCTTCATACTCACCTCAATATGGCTACATCAGTTCTACTACAT 1888
Query 1679 ATTCGGCTTCCTCTTCATTGTCTTCATCATATTGATCATAACTTGCGCAGAGATCACAGT 1738
|||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| ||
Sbjct 1889 ATTCGGCTTCCTCTTCATCGTCTTCATCATTTTGATCATCACTTGCGCAGAGATCACGGT 1948
Query 1739 CGTCCTCTGTTATTTTCAGCTCTGTAGTGAAGACTATCAATGGTGGTGGAGATCTTACTT 1798
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1949 CGTCCTCTGTTATTTTCAGCTGTGTAGTGAAGACTATCAATGGTGGTGGAGATCTTACTT 2008
Query 1799 AACATCAGGCTCTTCAGCGGTTTACCTCTTTCTTTACGCAGTCTTTTACTTCTACACCAA 1858
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2009 AACATCAGGCTCTTCCGCGGTTTACCTCTTTCTTTACGCAGTCTTTTACTTCTACACCAA 2068
Query 1859 ACTTGAGATCACAAAGCTCGTCTCTGCAGTGCTCTACTTTGGGTACATGCTCATAGTTTC 1918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2069 ACTTGAGATCACAAAGCTCGTCTCTGCAGTGCTCTACTTTGGGTACATGCTCATAGTTTC 2128
Query 1919 ATACGTTTTCTTCATCTTTACTGGTGCAATTGGTTTCTACGCATGCTTTTGGTTCACCAG 1978
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2129 ATACGTATTCTTCGTCTTTACTGGTGCAATTGGTTTCTACGCATGCTTTTGGTTCACCAG 2188
Query 1979 GCTTATCTACTCTTCAGTTAAAATTGATTGATCTTTAATCACCTTCTTAGTAAGCTGTAT 2038
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2189 GCTTATCTACTCTTCGGTTAAAATCGATTGATCTTTAATCACCTTCTTAGTAAGCTGTAT 2248
Query 2039 CTTAAATCTTGTTCTTCCGAAAAAtttcgtttcgttcttttttgtttcctccttttgaat 2098
|||||||||||||||| ||||||| | || || ||||||||||||| |||
Sbjct 2249 CTTAAATCTTGTTCTT--------TTTCGTT-C-TT-TT----GTTTCCTCCTTTTAAAT 2293
Query 2099 tttgtgatgattttgaGATATGTAGACATAAACTCC-ATTTTATTGTAAACATACATAGA 2157
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2294 TTTGTGATGATTTTGAGATATGTAGACATAAACTTTTATTTTATTGTAAACATACATAGA 2353
Query 2158 TCTCAAGAGTACAACAACTCTCTCAT 2183
|||||||||||||||| | ||||||
Sbjct 2354 GCTCAAGAGTACAACAATTGTCTCAT 2379
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108282575565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5