BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481272 Length=2183 Score E Sequences producing significant alignments: (Bits) Value AT2G24170.1 | Symbols: | Endomembrane protein 70 protein famil... 3406 0.0 > AT2G24170.1 | Symbols: | Endomembrane protein 70 protein family | chr2:10274144-10277266 REVERSE LENGTH=2382 Length=2382 Score = 3406 bits (1844), Expect = 0.0 Identities = 2076/2186 (95%), Gaps = 23/2186 (1%) Strand=Plus/Plus Query 1 AAATCGTCCAATTGCCATGTTTCTTCCCACTCTCTTCTCCTTCATATAAGAAATTTCACT 60 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 214 AAATCGTCCAATTGCCATGTTTCTTCCCACTCTCTTCTCCTTCATTTAAGAAATTTCACT 273 Query 61 CTACGAAGAAGACAAAGACGAAATCGAGCTAATCCATGGCGAAAGTTCGGATTTTGATCT 120 || |||||||| ||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 274 CTCCGAAGAAG---AAGACGAAATCGAGCAAATCCATGGCGAAAGTTCGGATTTTGATCT 330 Query 121 TCACCCTTTTCGTCTTCTTCTTCCTCAATGTCAATATCCATGGATTTTACCTTCCTGGTG 180 |||||||| || | ||||||| |||||||||| |||||||||||||||||||||| || | Sbjct 331 TCACCCTTGTCTTATTCTTCTCCCTCAATGTCCATATCCATGGATTTTACCTTCCCGGCG 390 Query 181 TCGCTCCTCAAGATTTCCAAATGGGTGATGCATTGATGGTGAAAGTTAATAAATTGACAT 240 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 391 TCGCTCCACAAGATTTCCAAATGGGAGATGCATTGATGGTGAAAGTTAATAAATTGACAT 450 Query 241 CTACAAAGACTCAGCTTCCATATTCCTACTATTCTCTTCCTTATTGTCGTCCTGAACATA 300 |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 451 CTACAAAGACTCAGCTTCCATATTCCTATTATTCTCTTCCTTATTGTCGTCCAGAACATA 510 Query 301 TTGTTGATAGTGCTGAGAATCTCGGTGAAGTTCTTCGTGGTGATCGAATTGAGAACTCTC 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 511 TTGTTGATAGTGCTGAGAATCTCGGTGAAGTTCTTCGTGGTGATCGAATTGAGAACTCTC 570 Query 361 CCTTTGTGTTTAAAATGAGGGAGTCGCAGATGTGCGCTGCGGTTTGTCGAGTGAAGCTTG 420 | |||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| Sbjct 571 CTTTTGTGTTTAAAATGAGGGAATCGCAGATGTGTGCTGCGGTTTGTCGTGTGAAGCTTG 630 Query 421 ATAAGAAAACCGCCAAGGCGTTAAAGGAGAAGATTGCTGATGAGTATCGGGTTAACATGA 480 ||||||||||||| |||||||| |||||||||||||||||||| ||||| |||||||||| Sbjct 631 ATAAGAAAACCGCAAAGGCGTTTAAGGAGAAGATTGCTGATGAATATCGAGTTAACATGA 690 Query 481 TTTTGGACAACCTTCCATTAGTTGTTCCGGTGCAAAGGCCAGATCAGGACAATGTTGTAG 540 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 691 TTTTGGACAACCTTCCCCTAGTTGTTCCGGTGCAAAGGCCAGATCAGGACAATGTTGTAG 750 Query 541 TGTATCAGCATGGTTTCCATGTTGGTCTCAAGGGAATCTTTGCTGGTAAAAAGGAGGAAA 600 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 751 TGTATCAGCATGGTTTCCATGTTGGTCTCAAGGGAATCTTTGCTGGCAAAAAGGAGGAGA 810 Query 601 AGTATTTTATCCACAACCACTTGACCTTCACTGTTAGGTATCACAGAGATATACAGACCG 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 811 AGTATTTTATCCACAACCACTTGACCTTCACTGTTAGGTATCACAGAGATATACAGACCG 870 Query 661 ATTCTTCAAGAATCGTCGGCTTTGAAGTCAAGCCGTTCAGTGTCAAGCATGAATATGAAG 720 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 871 ATTCTTCAAGAATCGTTGGCTTTGAAGTCAAGCCGTTCAGTGTCAAACATGAATATGAAG 930 Query 721 GTCAATGGAATGAAAAGGCTCGGTTAACGACATGTGATCCACATACAAAGCGTGCAGTCA 780 ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 931 GTCAATGGAATGAAAAGGCTCGGTTAACGACTTGTGATCCGCATACAAAGCGTGCAGTCA 990 Query 781 CTAACTCTGAGTCTCCTCAGGAGGTCGAAGAAGGGAACGAGATTATATTCACATATGATG 840 ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 991 CTAACTCTGAGTCTCCTCAGGAGGTTGAAGAAGGGAACGAGATTATCTTCACATATGATG 1050 Query 841 TTGATTTCCAGGAGAGTGAGGTGAAATGGGCGTCTAGGTGGGACACTTACCTTCTCATGG 900 |||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1051 TTGACTTCCAGGAAAGTGAGGTGAAATGGGCGTCTAGGTGGGACACTTACCTTCTAATGG 1110 Query 901 CTGATGATCAGATTCATTGGTTCTCAATCGTTAATTCCATGATGATTGTTCTTTTTCTCT 960 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 1111 CTGATGATCAGATTCATTGGTTCTCAATCGTTAATTCTATGATGATTGTTCTTTTCCTCT 1170 Query 961 CTGGTATGGTTGCTATGATCATGCTAAGAACACTCTACCGAGATATTTCCAACTACAATC 1020 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1171 CTGGTATGGTCGCTATGATCATGCTAAGAACACTCTACCGAGATATTTCCAACTACAATC 1230 Query 1021 AGTTAGAGACTCATGAAGAGGCCCTCGAAGAGACGGGTTGGAAATTGGTACACGGAGATG 1080 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1231 AGTTAGAGAGTCATGAAGAGGCCCTCGAAGAGACGGGTTGGAAATTGGTACACGGAGATG 1290 Query 1081 TTTTCAGACCGCCAACAAATCCGGAGTTGCTCTGTGTCTACGCAGGCACTGGAGTTCAAT 1140 ||||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||||| Sbjct 1291 TTTTCAGACCGCCAACAAACCCGGAGTTGCTTTGTGTTTATGCAGGCACTGGAGTTCAAT 1350 Query 1141 GCTTTGGAATGATTCTTGTCACCATGATCTTCGCGTGTCTTGGCTTTTTATCCCCTTCAA 1200 ||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||| Sbjct 1351 GCTTTGGAATGATTCTTGTCACCATGATCTTTGCTTGTCTTGGCTTTTTATCTCCTTCAA 1410 Query 1201 ACCGTGGTGGTCTTATGACGGCTATGCTTTTGCTTTGGGTATTCATGGGACTATTGGTAG 1260 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || Sbjct 1411 ACCGTGGTGGTCTTATGACGGCTATGCTTTTGCTTTGGGTTTTCATGGGACTATTGGCAG 1470 Query 1261 GATACGTGTCTTCACGCCTCTACAA-ATCTTTACGAGGAACCGAATGGAAGAA-AATCGC 1318 |||||| |||||||||||||||||| | | ||| |||||||||||||||| || || ||| Sbjct 1471 GATACGCGTCTTCACGCCTCTACAAGA-CGTTAAGAGGAACCGAATGGAA-AAGAAACGC 1528 Query 1319 TCTGAAAACCGCATTCATGTTTCCCGCTACCATCTTTGTCACCTTCTTTGTTCTGAATGC 1378 ||||||||||||||||||||||||||||||| |||||||| |||||||||| || ||||| Sbjct 1529 TCTGAAAACCGCATTCATGTTTCCCGCTACCGTCTTTGTCGCCTTCTTTGTCCTTAATGC 1588 Query 1379 CATAATCTGGGGACAAAAATCATCTGGGGCTGTTCCATTTGGTACAATGTTTGCTTTGGT 1438 ||||||||||||||||||||||| || || || |||||||||||||||||||||||||| Sbjct 1589 GATAATCTGGGGACAAAAATCATCCGGTGCAGTCCCATTTGGTACAATGTTTGCTTTGGT 1648 Query 1439 CGTCCTCTGGTTTGGTATCTCTGTTCCACTTGTCTTCATCGGTGGCTACATTGGTTTCAG 1498 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1649 TGTCCTCTGGTTTGGTATCTCTGTTCCACTTGTTTTCATCGGTGGCTACATTGGTTTCAG 1708 Query 1499 AAAACCTGCACCGGAAGATCCAGTGAAAACCAACAAGATTCCGAGGCAGATCCCAATACA 1558 ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||| Sbjct 1709 AAAACCTGCACCGGAAGATCCAGTGAAAACCAACAAGATCCCGCGGCAGATCCCAACACA 1768 Query 1559 GGCCTGGTACATGAACCCAATATTCTCCATTTTGATTGGAGGCATTCTCCCATTCGGCGC 1618 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 1769 GGCCTGGTACATGAACCCAATCTTCTCCATTTTGATTGGAGGCATTCTCCCATTTGGCGC 1828 Query 1619 AGTCTTCATCGAGCTCTTCTTCATACTCACCTCGATATGGCTACACCAATTCTACTACAT 1678 ||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| Sbjct 1829 AGTCTTCATCGAGCTCTTCTTCATACTCACCTCAATATGGCTACATCAGTTCTACTACAT 1888 Query 1679 ATTCGGCTTCCTCTTCATTGTCTTCATCATATTGATCATAACTTGCGCAGAGATCACAGT 1738 |||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| || Sbjct 1889 ATTCGGCTTCCTCTTCATCGTCTTCATCATTTTGATCATCACTTGCGCAGAGATCACGGT 1948 Query 1739 CGTCCTCTGTTATTTTCAGCTCTGTAGTGAAGACTATCAATGGTGGTGGAGATCTTACTT 1798 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1949 CGTCCTCTGTTATTTTCAGCTGTGTAGTGAAGACTATCAATGGTGGTGGAGATCTTACTT 2008 Query 1799 AACATCAGGCTCTTCAGCGGTTTACCTCTTTCTTTACGCAGTCTTTTACTTCTACACCAA 1858 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 2009 AACATCAGGCTCTTCCGCGGTTTACCTCTTTCTTTACGCAGTCTTTTACTTCTACACCAA 2068 Query 1859 ACTTGAGATCACAAAGCTCGTCTCTGCAGTGCTCTACTTTGGGTACATGCTCATAGTTTC 1918 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2069 ACTTGAGATCACAAAGCTCGTCTCTGCAGTGCTCTACTTTGGGTACATGCTCATAGTTTC 2128 Query 1919 ATACGTTTTCTTCATCTTTACTGGTGCAATTGGTTTCTACGCATGCTTTTGGTTCACCAG 1978 |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2129 ATACGTATTCTTCGTCTTTACTGGTGCAATTGGTTTCTACGCATGCTTTTGGTTCACCAG 2188 Query 1979 GCTTATCTACTCTTCAGTTAAAATTGATTGATCTTTAATCACCTTCTTAGTAAGCTGTAT 2038 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 2189 GCTTATCTACTCTTCGGTTAAAATCGATTGATCTTTAATCACCTTCTTAGTAAGCTGTAT 2248 Query 2039 CTTAAATCTTGTTCTTCCGAAAAAtttcgtttcgttcttttttgtttcctccttttgaat 2098 |||||||||||||||| ||||||| | || || ||||||||||||| ||| Sbjct 2249 CTTAAATCTTGTTCTT--------TTTCGTT-C-TT-TT----GTTTCCTCCTTTTAAAT 2293 Query 2099 tttgtgatgattttgaGATATGTAGACATAAACTCC-ATTTTATTGTAAACATACATAGA 2157 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 2294 TTTGTGATGATTTTGAGATATGTAGACATAAACTTTTATTTTATTGTAAACATACATAGA 2353 Query 2158 TCTCAAGAGTACAACAACTCTCTCAT 2183 |||||||||||||||| | |||||| Sbjct 2354 GCTCAAGAGTACAACAATTGTCTCAT 2379 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 108282575565 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5