BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481273
Length=1600
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24180.1 | Symbols: CYP71B6 | cytochrome p450 71b6 | chr2:10... 2381 0.0
AT3G26295.1 | Symbols: CYP71B33 | putative cytochrome P450. | c... 121 3e-26
> AT2G24180.1 | Symbols: CYP71B6 | cytochrome p450 71b6 | chr2:10281847-10283735
FORWARD LENGTH=1701
Length=1701
Score = 2381 bits (1289), Expect = 0.0
Identities = 1500/1604 (94%), Gaps = 6/1604 (0%)
Strand=Plus/Plus
Query 1 CATACTACACAACCAACAAAAACTACGCA-ACAATAACAACAAAATGTCTCTTTTCTCCA 59
|||||||||||||||||||||||||| | || ||||||||||||||||||||||||||
Sbjct 1 CATACTACACAACCAACAAAAACTAC-AAGACGATAACAACAAAATGTCTCTTTTCTCCT 59
Query 60 TCCCCATCTCCACTGAGTTGCTTCCATGGCTTCTCCTACTTTTGATTCCTCCACTTCTTA 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TCCCCATCTCCACTGAGTTGCTTCCATGGCTTCTCCTACTTTTGATTCCTCCACTTCTTA 119
Query 120 TCTTCTTTCTTCTTCGTTCCCCTAAAAATCTTCCACCAGGTCCATCAAGATTACCTCTCT 179
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 120 TCTTCTTTCTTCTTCGTTCCCCTAAAAATCTTCCACCAGGTCCACCAAGATTACCTATCT 179
Query 180 TAGGAAACATCCACCAGCTCGGATCTCTTCCTCACCGCACTCTCAGAGATCTCTCTCTCA 239
||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||
Sbjct 180 TAGGAAACATCCACCAGCTCGGATCCCTCCCTCACCGCAGTCTCAGAGATCTCTCTCTCA 239
Query 240 AATATGGCCCCGTCATCACCGTCTATCTCGGAAGCGTCCGGACGGTGGTTGTACACTCTC 299
|||||||||| |||||||||||||||||||| |||||||| || |||||||| |||||||
Sbjct 240 AATATGGCCCAGTCATCACCGTCTATCTCGGCAGCGTCCGTACCGTGGTTGTTCACTCTC 299
Query 300 CGGAGACGGCGGAGGAAGTTCTAAAACTTCATGACTCCGAGTGTTGTACTCGTCCAAAGC 359
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 300 CGGAGACGGCGGAGGAAGTTCTAAAACTTCACGACTCCGAGTGTTGTACTCGTCCAAAGC 359
Query 360 TTTCTATCACCAAAAGCTTTTTCTACGATGGACTTGGTCTAGGGTTTACTCAGTGGGGTG 419
| ||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||
Sbjct 360 TATCTATCACCAAAAGCTTTTTCTATGATGGACTTGGTCTAGGGTTTACTAAATGGGGTG 419
Query 420 ATTACTACAGAGATGTACGTAAACTCTGTGTTCTTGAACTTTTTTCCGTTAAACGAGCTA 479
|||||||||||||||| || ||||||||||||||||||||||| |||||||||||||| |
Sbjct 420 ATTACTACAGAGATGTGCGGAAACTCTGTGTTCTTGAACTTTTCTCCGTTAAACGAGCCA 479
Query 480 GCTCGTTTAGGAACTTGAGAGAGGAGGAGCTGAGTCGACTCGTTGACTCGCTATCTGACT 539
|||||| ||||| | ||||||||||||||||||||||||||| ||||| | |||||||
Sbjct 480 ACTCGTTCCGGAACATAAGAGAGGAGGAGCTGAGTCGACTCGTTAACTCGTTTTCTGACT 539
Query 540 CAGCGGCGTCTGGATCTTCCGTTGATCTTACCGCGAAGTTGGCCAAGTTCGTCGCGAGCT 599
| ||| | ||||||||||||||||| |||||||| || ||||| ||||||||||||||||
Sbjct 540 CGGCGTCATCTGGATCTTCCGTTGACCTTACCGCAAATTTGGCTAAGTTCGTCGCGAGCT 599
Query 600 TTACGTGTCGAATGGCGTTTGGATTGAGTTTTCAAGGAAGTGGAATTGATAACGAGAGGT 659
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 600 TTACGTGTCGAATGGCGTTTGGATTGAGTTTTCAAGGAAGTGGAATGGATAACGAGACGT 659
Query 660 TTATGGAGGTGTTCACGGAGGCGAACAGAGTCATCGGAAAAATCGCGGCGGCGGATATTT 719
|| ||||| |||||||||||||||||||||| ||||||||| |||||||||||||||| |
Sbjct 660 TTCTGGAGCTGTTCACGGAGGCGAACAGAGTGATCGGAAAATTCGCGGCGGCGGATATAT 719
Query 720 TCCCTGGGTTTGGTTGGATCTTGGATCGGATCAATGGTCTTGATTCTAGCCGGAGGAAGA 779
|||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 720 TCCCCGGGTTTGGCTGGATCTTGGATCGGATCAGTGGTCTTGATTCTAGCCGGAGGAAGA 779
Query 780 GTTTTCAAGATCTTGATACGTTTTACCAGAAAGCTATTGTTGATCATCGAGAAAAGAAGA 839
||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||
Sbjct 780 GTTTTCAAGATCTTGATACGTTTTACCAGAAAGCTATTGTTGACCATCGGGAGAAGAAGA 839
Query 840 AAACTGAAGACCGTGAAGATTTGATTGACGTCTTGCTCAAGTTACAGAGTCAAGAAACCA 899
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 840 AAACTGAAGACCGTGAAGATCTCATTGACGTCTTGCTCAAGTTACAGAGTCAAGAAACCA 899
Query 900 AACTTGGTTCTTCAAGAATCACTGATACACATATCAGAGCTATTCTTATGGATTTGTTTG 959
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 900 AACTTGGTTCTTCAAGAATCACCGATACACATATCAGAGCTATTATTATGGATTTGTTTG 959
Query 960 TAGCAGGAGTAGACACATCTGTTATCACTATGGATTGGACATTGGCAGAGCTTGCAAGAC 1019
||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 960 TAGCAGGAGTAGACACATCTGTTATCACTTTGGATTGGACAATGGCAGAGCTTTCAAGAC 1019
Query 1020 ATCCAAGAGTGATGAAGAAAGTACAAGCCGAGATTCGTGAACTTGTAGGAGACAAAGGGA 1079
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1020 ATCCAAGAGTAATGAAGAAAGTACAAGCCGAGATTCGTGAACACGTAGGAGACAAAGGTA 1079
Query 1080 TAGTCACGTATGATGATCTTGAGGGTCTAGTCTACATGAAAATGGTGATCAAGGAGACTT 1139
|||| || || |||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 1080 TAGTGACATACGATGATCTCGAGGCTCTAGTCTACATGAAAATGGTGATCAAGGAGACTT 1139
Query 1140 GGAGATTACACGCACCGAGTCCGATTCTGATTCCAAGAGAAGCAATGACCAACTTCAAGA 1199
|||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1140 GGAGGTTACACGCACCGAGTCCTATTCTGATTCCAAGAGAAGCAATGACTAACTTCAAGA 1199
Query 1200 TCAAGGGTTACGACATTTACCCTGGAACGCGTATTCATGTCAATGCTTGGGCGATTGGGC 1259
|||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1200 TCAAGGGTTATGATATTTACCCTGGAACGCGTATTCATGTCAATGCTTGGGCTATTGGAC 1259
Query 1260 GTAACCCTGATGTATGGAAGGATCCTGATGAGTTTATCCCAGAGAGATTTGTGGATAGCA 1319
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1260 GTAACCCTGATGTATGGAAGGATCCTGATGAGTTTATACCAGAGAGATTTGTTGATAGCA 1319
Query 1320 ATGTGGATACTAAAGGGACGAGTTTTGAGCTATTACCGTTTGGGAGTGGACGCAGAGGTT 1379
||||||| ||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 1320 ATGTGGAAACTAAAGGGACAAGTTTTGAGCTGTTGCCGTTTGGGAGTGGACGCAGAGGTT 1379
Query 1380 GTCCCGCGATGTACATGGGATTAAGTACGGTGGAGTACACACTGGCGAATCTTTTGTATC 1439
||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1380 GTCCCGCAATGTACGTGGGATTAAGTACGGTGGAGTACACATTGGCGAATCTTTTGTATC 1439
Query 1440 ATTTTGATTGGAAAGCGACGGAGGAAGTGAGTATTGAAGAAGCACCTGGTCTCACTAGCC 1499
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 1440 ATTTTGATTGGAAAGCGACTGAGGAAGTGAGTGTTGAAGAAGCACCTGGTCTCACTAGCC 1499
Query 1500 ATAGGAAGCATCCTCTTCACCTTGTTCCAGTTAGTGTCATCAACCGCAAACTTTAGTTTG 1559
| |||||||||||||||||||||||||| |||| ||||||||||||||| |||||| ||
Sbjct 1500 ACAGGAAGCATCCTCTTCACCTTGTTCCTGTTAATGTCATCAACCGCAAGCTTTAGAGTG 1559
Query 1560 -GGAATGCA-AAACGCA-A-TTTGCAATGAATAAGGATTAATAA 1599
|||| ||| |||| | ||| | | |||||||| |||||||
Sbjct 1560 CGGAAAGCACAAACATTTAGTTTTCGACGAATAAGGCTTAATAA 1603
> AT3G26295.1 | Symbols: CYP71B33 | putative cytochrome P450. |
chr3:9636701-9638348 REVERSE LENGTH=1503
Length=1503
Score = 121 bits (65), Expect = 3e-26
Identities = 262/354 (74%), Gaps = 26/354 (7%)
Strand=Plus/Plus
Query 1112 TACATGAAAATGGTGATCAAGGAGACTTGGAGATTACA-CGCACCGAG-TCCGATTCTGA 1169
||| |||||| |||||| || || || ||||| |||| | | || || || ||||
Sbjct 1051 TACCTGAAAACGGTGATTAAAGAAACATGGAGGCTACATC-CTCC-AGCACCTCTTCTTC 1108
Query 1170 TTCCAAGAGAAGCAATGACCAACTTCAAGATCAAGGGTTACGAC-AT-TTACCCTGGAAC 1227
|||||||||||| |||| | | || ||||||| || ||| || || |||| | ||
Sbjct 1109 TTCCAAGAGAAGTAATGTCTGAGTTTGAGATCAACGGCTAC-ACGATGCAACCCAAG-AC 1166
Query 1228 GC-GTATTCATGTCAATGCT-TGGGCGATTGGGCGT-AACCCTGATGTATGGAAGGATCC 1284
| | ||||||||||||| | ||||| || || ||| | ||| || ||||| |||||
Sbjct 1167 ACAG-ATTCATGTCAATG-TATGGGCTATCGGACGTGATCCC-AATACCTGGAAAGATCC 1223
Query 1285 TGATGAGTTTATCCCAGAGAGATTTGTGGATAGCAATGTGGATACTAAAGGGAC-GAGTT 1343
|| |||||| | |||||||| ||| | ||||| ||| | ||||| ||| |||| || |
Sbjct 1224 CGAGGAGTTTCTTCCAGAGAGGTTTATTGATAGTAATATTGATAC-AAAAGGACAGAACT 1282
Query 1344 TTGAGCTATTACCGTTTGGGAGTGGAC-GCA-GAG-GT-TGTCCCGCGATGTACAT-GGG 1398
||||| | |||||||| ||| || | ||| ||| | ||||| || |||||||| |||
Sbjct 1283 TTGAGTTGCTACCGTTT-GGA--GG-CGGCAGGAGAATGTGTCCTGCAATGTACATGGGG 1338
Query 1399 ATTAAGTACGGTGGAGTACACACTGGCGAATCTTTTGTATCATTTTGATTGGAA 1452
| || | |||||||| || |||||||||||||||||||||||||||||
Sbjct 1339 A-CAACAATGGTGGAGTTTGGTCTTGCGAATCTTTTGTATCATTTTGATTGGAA 1391
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79015657830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5