BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481279
Length=2959
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24230.1 | Symbols: | Leucine-rich repeat protein kinase fa... 4423 0.0
> AT2G24230.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr2:10301817-10304812 REVERSE LENGTH=2996
Length=2996
Score = 4423 bits (2395), Expect = 0.0
Identities = 2797/2988 (94%), Gaps = 39/2988 (1%)
Strand=Plus/Plus
Query 1 AAAAAGATAGTGTTGTCATAATCAGAGGTAGGGGAAGCTTAATATTATATATTAATAC-A 59
||||||||| | |||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1 AAAAAGATACTCTTGTCATAATCAGAGGTAGGGGAAGCTTAATATTATATATTAAT-CTA 59
Query 60 TGAC--AAATCCTCCTTTGTCTTGTTTTTATGTCCTTTGGTCTCTCGTGTTCTTGAGAAG 117
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TGACAAAAATCCTCCTTTTTCTTGTTTTTATGTCCTTTGGTCTCTCGTGTTCTTGAGAAG 119
Query 118 CACCACAAAG-T-------CACTTTTCCTATCTTCAGATCTCTCCTTAATA-TTGTCTTC 168
||||||| || | ||||||| |||||||||||||||||||||||| ||||||||
Sbjct 120 CACCACAGAGTTAAACAAACACTTTTTCTATCTTCAGATCTCTCCTTAATATTTGTCTTC 179
Query 169 AACTGTTTCTTGCATGAGTACCCAAAAGTAACTTCAGTGAGATTTTC-TTTTTCTGGAGG 227
||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||
Sbjct 180 AACTGTTTCTTGCATGAGTACCCTAAAGTAGCTTCAGTGAGATTTTCTTTTTTCTGGAGG 239
Query 228 CAGATTTTGTTGTTTAGCT-----C--TCTTCAAT--G----GGTCTTGGTTTTTGGGGT 274
||||||||||||||||||| | |||||||| | ||||||||||||||||||
Sbjct 240 CAGATTTTGTTGTTTAGCTCCAAGCTTTCTTCAATGGGTCTTGGTCTTGGTTTTTGGGGT 299
Query 275 TATGCATTGATTCTTTCTCTGTTCTTGAAGCAATTTCATTGCCAAGAACCAAACACAGAT 334
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 300 TATGCATTGTTTCTTTCTCTGTTCTTGAAGCAATCTCATTGCCAAGAACCAAACACAGAT 359
Query 335 GGTTTCTTTGTATCTGAATTCTTCA-AAG-AAATGAGTTTAAGCTCTGCTCAAGCTTATA 392
||||||||||| ||||||||| | | ||| ||||| ||||||||||| ||||||||||||
Sbjct 360 GGTTTCTTTGTCTCTGAATTC-T-ATAAGCAAATGGGTTTAAGCTCTTCTCAAGCTTATA 417
Query 393 ACTTCTCTGCTCCTTTTTGTTCATGGCAAGGTTTGTTCTGTGATTCCATGAATGAGCATG 452
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 418 ACTTCTCTGCTCCTTTTTGTTCATGGCAAGGTTTGTTCTGTGATTCCAAGAATGAGCATG 477
Query 453 TGATTGTGTTAATTGCTTCTGGAATGAGTTTATCTGGTCAAATCCCTGATAACACCATTG 512
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 478 TGATTATGTTAATTGCTTCTGGAATGAGTTTATCTGGTCAAATCCCTGATAACACAATTG 537
Query 513 GTAAACTCAGCAAGCTTCAATCTTTGGATCTCAGCAACAACAAAATCTCTGCTTTACCAT 572
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 538 GTAAACTCAGCAAGCTTCAATCTTTGGATCTTAGCAACAACAAAATCTCTGCTTTACCAT 597
Query 573 CTGATTTCTGGAGTTTGAACACTTTGAAGAATCTTAACCTCTCTTTCAACAAGATCTCTG 632
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 598 CTGATTTCTGGAGTTTGAACACTTTGAAGAATCTCAACCTCTCTTTCAACAAGATCTCTG 657
Query 633 GGTCTTTCCCTAGCAATGTTGGCAATTTTGGGCAGCTTGAGTCACTTGATATCTCTCACA 692
|||||||| |||| |||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 658 GGTCTTTCTCTAGTAATGTTGGCAATTTTGGGCAGCTTGAGTTACTTGATATCTCTTACA 717
Query 693 ACAACTTCTCTGGTGCAATCCCTGAAGCTGTAGATTCTCTTGTTAGCTTGAGAGTCTTGA 752
|||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 718 ACAATTTCTCTGGTGCAATCCCTGAAGCTGTGGATTCTCTTGTTAGTTTGAGAGTCTTGA 777
Query 753 ATCTTGATCACAATGGGTTTCAGATGTCGATTCCACGAGGGCTTCTTGGTTGCCATTCTC 812
| |||||||| ||||||||||||||||||||||||||||| |||||||||||||| || |
Sbjct 778 AGCTTGATCATAATGGGTTTCAGATGTCGATTCCACGAGGACTTCTTGGTTGCCAATCCC 837
Query 813 TGGTTTCTATTGATCTATCCTCTAACCAGCTTGAAGGGTTTCTTCCTGATGGGTTTGGCT 872
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 838 TGGTTTCTATTGATCTCTCCTCTAACCAGCTTGAAGGGTCTCTTCCTGATGGGTTTGGCT 897
Query 873 CTGCATTTCCAAAGCTTAAAACTTTGAGCCTTGCAGGAAACAAGATTCATGGCAGGGACA 932
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 898 CTGCATTTCCAAAGCTTGAGACTTTGAGCCTTGCAGGAAACAAGATTCATGGCAGGGACA 957
Query 933 CTGATTTTGCTGATTTGCAATCCATTAGTTCTCTCAACATTTCAGGGAATCAATTTGAAG 992
| |||||||||||| || ||||||| |||| ||||||||||||||| ||||| ||||| |
Sbjct 958 CAGATTTTGCTGATATGAAATCCATCAGTTTTCTCAACATTTCAGGAAATCAGTTTGATG 1017
Query 993 GTTCAGTGACTGGTGTGTTCAAGGAGACTCTAGAAGTGGCTGATCTCAGCAAAAACCGGT 1052
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1018 GTTCAGTGACAGGTGTGTTCAAGGAGACTTTAGAAGTGGCTGATCTCAGCAAAAACCGGT 1077
Query 1053 TTCAAGGTCATATATCCTCTCAGGTAGACTCCAACTGGTTTAGTTTGATTTATCTTGACT 1112
||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1078 TTCAAGGTCATATCTCATCTCAGGTAGACTCCAACTGGTTTAGTTTGGTTTATCTTGACT 1137
Query 1113 TGTCTGAGAATGAGATCAGTGGAGATATCTTCAAGAATCTGACACTATTAAAGAAGCTTA 1172
|||||||||||||| ||||||||| | | ||||||||||||||||| |||||||||| |
Sbjct 1138 TGTCTGAGAATGAGCTCAGTGGAG-T-T-ATCAAGAATCTGACACTACTAAAGAAGCTCA 1194
Query 1173 AGCACTTAAATCTAGCTTGGAATAGGTTCAACAGAGGAATGTTTCCGAGGATTGAGATGA 1232
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1195 AGCACTTAAATCTAGCTTGGAATAGATTCAACAGAGGAATGTTTCCGAGGATTGAGATGC 1254
Query 1233 TTTCTGGTTTAGAGTATCTTAACTTGTCAAACACAAATCTTTATGGTCACATACCTAGAG 1292
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1255 TTTCTGGTTTAGAGTATCTTAACTTGTCAAACACAAATCTTTCTGGTCACATACCTAGAG 1314
Query 1293 AGATCTCAGAGCTGAGTGATTTGAGTACACTTGATGTTTCTGGTAACCATCTTTCAGGAC 1352
|||||||| |||||||||||||||||||||| ||||||||||| ||||||||| ||||||
Sbjct 1315 AGATCTCAAAGCTGAGTGATTTGAGTACACTCGATGTTTCTGGAAACCATCTTGCAGGAC 1374
Query 1353 ATATCCCAATTTTGAGTATCAAAAACCTCGTAGCTATTGATGTTTCGAGGAACAATTTGT 1412
||||||| |||||||||||||| ||||| || ||||| ||||| |||||||||||||||
Sbjct 1375 ATATCCCGATTTTGAGTATCAAGAACCTTGTGGCTATCGATGTGTCGAGGAACAATTTGA 1434
Query 1413 CGGGAGAGATACCGATGTCTATCCTTGAGAAGCTCCCTTGGATGGAGAGATTCAACTTCT 1472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 CGGGAGAGATACCGATGTCTATCCTTGAGAAGCTCCCTTGGATGGAGAGATTCAACTTCT 1494
Query 1473 CTTTCAACAACTTAACATTTTGTTCCGGAAAGTTTTCAACCGAAACTCTGATCACATCCT 1532
|||||||||||||||||||||||||||||||||| ||| | |||||||||| || |||||
Sbjct 1495 CTTTCAACAACTTAACATTTTGTTCCGGAAAGTTCTCAGCTGAAACTCTGAACAGATCCT 1554
Query 1533 TCTTTGGTTCTACAAATAGCTGCCCTATCGCTGCAAACCCGGCGCTCTTCAAGAGAAGAA 1592
|||||||||||||||||||||||||||||||||||||||| || || |||||||||| ||
Sbjct 1555 TCTTTGGTTCTACAAATAGCTGCCCTATCGCTGCAAACCCAGCACTTTTCAAGAGAAAAA 1614
Query 1593 GATCGGTCACTGGGGGACTCAAGCTGGCTTTGGCAGTGACGCTTTCTACGATGTGTTTAC 1652
|||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1615 GATCAGTCACTGGAGGACTTAAGCTGGCTTTAGCAGTGACGCTTTCTACGATGTGTTTAC 1674
Query 1653 TAATAGGAGCATTGATTTTTGTAGCATTTGGCTGCAGAAGGAGACCCAAATCCGGTGAAG 1712
| |||||||||||||||||||||||||||||||||||||||| | | |||||||||||||
Sbjct 1675 TCATAGGAGCATTGATTTTTGTAGCATTTGGCTGCAGAAGGAAAACTAAATCCGGTGAAG 1734
Query 1713 CCAATA-ATGTCCCATTAAAGTTGGAACAAAGCATTTCAGGTCCATTCTCTTTCCAAACG 1771
|||| | || || || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1735 CCAA-AGATCTCTCAGTAAAGGAGGAACAAAGCATTTCAGGTCCATTCTCTTTCCAAACA 1793
Query 1772 GATTCTACTACATGGGTGGCTGATGTGAAGCAAGCAAATGCAGTTCCTGTGGTTATCTTT 1831
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1794 GATTCCACTACATGGGTGGCTGATGTGAAGCAAGCAAATGCAGTTCCTGTGGTTATCTTT 1853
Query 1832 GAGAAGCCATTGTTGAACATAACGTTTTCGGATCTCTTGTCTGCGACTTCCAACTTCGAC 1891
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1854 GAGAAGCCATTGTTGAACATAACGTTTTCGGATCTCTTGTCTGCAACTTCCAACTTCGAC 1913
Query 1892 AGAGACACTCTCTTAGCAGACGGTAAATTTGGTCCTGTTTA-CAGAGGTTTCCTGCCCGG 1950
||||||||||||||||| ||||| ||||||||||||||||| | |||||||||| |||||
Sbjct 1914 AGAGACACTCTCTTAGCGGACGGCAAATTTGGTCCTGTTTATC-GAGGTTTCCTCCCCGG 1972
Query 1951 TGGGATTCATGTAGCTGTAAAAGTTTTGGTCCACGGCTCAACTCTTAGTGACCAAGAAGC 2010
|||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1973 TGGGATACATGTAGCTGTAAAAGTTTTGGTTCATGGCTCAACTCTTAGTGACCAAGAAGC 2032
Query 2011 AGCTAGAGAGCTCGAGTTTCTTGGAAGGATCAAGCACCTAAATCTTGTTCCATTAACTGG 2070
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 2033 AGCTAGAGAGCTCGAGTTTCTTGGAAGGATCAAGCACCCAAATCTTGTCCCATTAACTGG 2092
Query 2071 ATATTGCATAGCTGGTGATCAAAGGATAGCCATTTACGAGTACATGGAAAACGGTAACTT 2130
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2093 ATATTGCATAGCCGGTGATCAAAGGATCGCCATTTACGAGTACATGGAAAACGGTAACTT 2152
Query 2131 ACAAAACCTGCTTCATGATCTGCCATTTGGAGTTCAGACAACAGATGATTGGACCACAGA 2190
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2153 GCAAAACCTGCTTCATGATCTGCCATTTGGAGTTCAGACAACAGATGATTGGACCACGGA 2212
Query 2191 TACATGGGAAGAAGAAACTGACAATGGAATCCAAAACATAGGGATTGAAGGCCCGGTGGC 2250
||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||
Sbjct 2213 TACATGGGAAGAAGAAACTGACAATGGAACCCAAAACATAGGGACTGAAGGCCCTGTGGC 2272
Query 2251 AACATGGCGGTTTAGGCACATGATAGCACTTGGAACTGCCCGAGCATTGGCATTCCTTCA 2310
||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||
Sbjct 2273 GACATGGCGGTTTAGGCACAAGATAGCACTTGGAACTGCCCGAGCATTAGCTTTCCTTCA 2332
Query 2311 CCACGGTTGTTCACCGCCGATGATCCATAGAGATGTGAAAGCTAGTAGTGTTTATCTTGA 2370
|||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct 2333 CCACGGTTGTTCACCGCCAATAATCCATAGGGATGTGAAAGCTAGTAGTGTTTATCTTGA 2392
Query 2371 CCAGAACTTGGAACCAAGATTATCTGATTTCGGTTTAGCCAAAGTCTTTGGAAACGGCTT 2430
|||||||| ||||||||||||||||||||| |||||||||||||| |||||||| || ||
Sbjct 2393 CCAGAACTGGGAACCAAGATTATCTGATTTTGGTTTAGCCAAAGTTTTTGGAAATGGTTT 2452
Query 2431 GGACGATGAGATTACCCGTGGCTCACCCGGTTATCTCCCTCCTGAGTTCTTGCAACCCGA 2490
|||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2453 GGACGATGAGATTATTCATGGCTCACCTGGTTATCTCCCTCCTGAGTTCTTGCAACCCGA 2512
Query 2491 ACACGAGCTGCCAACACCGAAATCCGATGTCTACTGCTTTGGAGTTGTTCTGTTTGAACT 2550
|||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 2513 ACACGAGCTGCCAACACCGAAATCTGACGTCTATTGCTTTGGAGTTGTTCTGTTTGAACT 2572
Query 2551 CATGACAGGGAAAAAGCCGATTGAAGATGATTATCTTGATGAGAAAGATACCAACTTGGT 2610
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2573 CATGACAGGGAAAAAGCCGATTGAAGATGATTATCTTGATGAGAAAGATACTAACTTGGT 2632
Query 2611 GAGTTGGGTTAGAAGTTTGGTTAGGAAGAATCAAGGATCAAAAGCTATTGATCCAAAAAT 2670
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 2633 GAGTTGGGTTAGAAGTTTAGTTAGGAAGAATCAAGCATCAAAAGCTATTGATCCAAAAAT 2692
Query 2671 ACAAGAGACAGGCTCAGAAGATCAGATGGAAGAAGCTCTCAAGATCGGATACCTCTGCAC 2730
|||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 2693 CCAAGAGACAGGCTCAGAAGAACAGATGGAAGAAGCTCTCAAGATTGGTTACCTCTGCAC 2752
Query 2731 AGCTGATCTTCCTTCAAAGCGGCCGAGTATGCAGCAAGTAGTTGGTCTTCTTAAAGATAT 2790
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2753 AGCTGATCTTCCTTCAAAGCGGCCAAGTATGCAGCAAGTAGTTGGTCTTCTTAAAGATAT 2812
Query 2791 CGAACCGAAACCTAATCAATGAAACTTCACTTTCTGAATCTCTGCAAAAATGTTCTCTTT 2850
||||| ||| |||| || |||||| ||||||||||||||||| ||| |||||||| |||
Sbjct 2813 TGAACCAAAATCTAACCAGTGAAACATCACTTTCTGAATCTCTACAACAATGTTCTTTTT 2872
Query 2851 CCCTTGAAAGTTTCATTTCTTTGCCtttttttCAATGTTTTGCTCTTTTCCATGGTTGTA 2910
||||||||||||| || ||||| ||||||| |||||||||||| ||| |||| ||||||
Sbjct 2873 CCCTTGAAAGTTTTATCTCTTTACCTTTTTC-CAATGTTTTGCTGTTTCCCATTGTTGTA 2931
Query 2911 TATATAAGCTTGTTTGCGTTTTCCTCTATCTCAAATGTTCTTGCTTCA 2958
|||||||||||||||||||| ||||||| ||||| |||||||||||
Sbjct 2932 TATATAAGCTTGTTTGCGTTAACCTCTATATCAAACCTTCTTGCTTCA 2979
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 147089476876
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5