BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481281
Length=1334
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24260.1 | Symbols: LRL1 | LJRHL1-like 1 | chr2:10319334-103... 2076 0.0
AT4G30980.1 | Symbols: LRL2 | LJRHL1-like 2 | chr4:15079243-150... 333 3e-90
> AT2G24260.1 | Symbols: LRL1 | LJRHL1-like 1 | chr2:10319334-10322222
REVERSE LENGTH=1410
Length=1410
Score = 2076 bits (1124), Expect = 0.0
Identities = 1269/1337 (95%), Gaps = 17/1337 (1%)
Strand=Plus/Plus
Query 1 TCTTCCCaaaaaaaaGTGTAGAAGCAGAAGAAGCCCATCATCATCATGATGAACTCTTCT 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 TCTTCCCAAAAAAAAGTGTAGAAGCAGAAGAAACCCATCATCATCATGATGAACTCTTCT 60
Query 61 CTTCTAACTCCATCTTCTTCATCTTCTTCCCATATCCAAACTCCATCTACGACTTTCGAC 120
||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 61 CTTCTAACTCCTTCTTCTTCATCTTCTTCCCATATCCAAACTCCATCAACAACTTTCGAC 120
Query 121 CACGAAGACTTCCTCGATCAAATCTTTTCTTCCTCCCCGTGGCCCTCCGTCGTCGACGAT 180
||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||
Sbjct 121 CACGAAGACTTCCTCGATCAAATCTTTTCCTCGGCCCCGTGGCCCTCCGTCGTCGATGAT 180
Query 181 GCTCATCCTCCTCCCTCCGATGGCTTCCACGGCCACGACGTCGACTCAAGAAATCAACAG 240
|||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||| | |
Sbjct 181 GCTCATCCTCTTCCCTCCGATGGCTTCCACGGCCACGATGTCGACTCAAGGAATCAGCCG 240
Query 241 ATCATGATGATGCCTTTGAATGATGGCTCCTCCGTGCACGCTCTTTATAATAGCTTCTCC 300
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 241 ATCATGATGATGCCTTTGAATGATGGCTCCTCCGTCCACGCTCTTTATAATGGCTTCTCC 300
Query 301 GCCTCCGGATCTCTTCCTAACTTCCATATCCCTCAGGGATCGGGAGGTGGATTGATGAAC 360
| | ||||||||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 301 GTCGCCGGATCTCTTCCTAACTTTCAAATCCCTCAGGGATCGGGAGGAGGATTGATGAAC 360
Query 361 CAACAAGGACAAACGCAAGCGCAAACGCAAACGCAGGCGAGCGCGTCTACAGCTACTGGT 420
|||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||
Sbjct 361 CAACAAGGACAAACGCAAACGCAAACGCAACCTCAGGCGAGCGCGTCTACAGCTACTGGT 420
Query 421 GGTACGGTGGCGGCTCCGCCGCAGAGTAGGACTAAAGTCCGAGCTAGGAGAGGTCAAGCA 480
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 421 GGTACGGTGGCGGCTCCGCCGCAGAGTAGGACTAAAATCCGAGCTAGGAGAGGTCAAGCA 480
Query 481 ACTGATCCTCATAGTATCGCCGAAAGGTTACGAAGAGAGAGAATTGCGGAAAGAATGAAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACTGATCCTCATAGTATCGCCGAAAGGTTACGAAGAGAGAGAATTGCGGAAAGAATGAAA 540
Query 541 GCTCTTCAAGAACTCGTTCCTAACGGCAATAAGACAGACAAGGCATCGATGCTCGATGAG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GCTCTTCAAGAACTCGTTCCTAACGGCAATAAGACAGACAAGGCATCGATGCTCGATGAG 600
Query 601 ATTATAGATTATGTCAAGTTTTTACAACTCCAAGTCAAGGTACTGAGCATGAGCAGATTG 660
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATCATAGATTATGTCAAGTTTTTACAACTCCAAGTCAAGGTACTGAGCATGAGCAGATTG 660
Query 661 GGAGGTGCTGCTTCAGTTTCTTCTCAAATCTCCGAGGCTGGTGGATCCCACGGGAACGCA 720
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GGAGGTGCTGCTTCCGTTTCTTCTCAAATCTCCGAGGCTGGTGGATCCCACGGGAACGCA 720
Query 721 TCCTCCGCCATGGCCGGCGGTAGCCAGACGGCCGGAAACTCCAACGACAGCATTACAATG 780
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 721 TCCTCCGCCATGGTCGGCGGTAGCCAGACGGCCGGAAACTCCAACGACAGCGTTACAATG 780
Query 781 ACGGAACATCAAGTGGCGAAGCTAATGGAAGAAGACATGGGCTCGGCCATGCAATACCTT 840
||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||
Sbjct 781 ACGGAACATCAAGTGGCCAAACTAATGGAAGAAGACATGGGCTCGGCCATGCAATATCTT 840
Query 841 CAAGGGAAAGGTCTTTGTCTCATGCCAATCTCTTTAGCCACCGCCATCTCAACCGCCACG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CAAGGGAAAGGTCTTTGTCTCATGCCAATCTCTTTAGCCACCGCCATCTCAACCGCCACG 900
Query 901 TGTCACTCTCGTAACCCTTTGATCCCTGGAGCTGTCGCGGACGTCGGAGGTCCTTCCTCT 960
|||||||| |||||||||||||||||||||||||| || |||||||||||||||||| ||
Sbjct 901 TGTCACTCCCGTAACCCTTTGATCCCTGGAGCTGTTGCCGACGTCGGAGGTCCTTCCCCT 960
Query 961 CCCAATCTTTCCGGCATGACCATACAGTCGACGAATACAACGACAATGGGTAACGGTAAT 1020
||||||||||| |||||||||||||||||||||| ||||| | |||||||| |||||||
Sbjct 961 CCCAATCTTTCTGGCATGACCATACAGTCGACGAGTACAA--A-AATGGGTAGCGGTAAT 1017
Query 1021 GGGAAGTTAAATGGTAACGGTAACGGCGTGACCAA-AGGTTC-TGCGTCGATCGCCGTTA 1078
||||| ||||| |||||||||||||||| | |||| | | | || ||||||||||
Sbjct 1018 GGGAAATTAAA------CGGTAACGGCGTGACCGAGAGGT-CGT-CTTCTATCGCCGTTA 1069
Query 1079 AAGAGGCTGTATCCGTTTCGAAACCGTGATAACGGCCGTTTACTTTTGGGGTTAGGCAAA 1138
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1070 AAGAGGCCGTATCCGTTTCGAAAGCGTGATAACGGCCGTTTACTTTTGGGGTTAGGCAGA 1129
Query 1139 GAGATACCAAAAACAAAGAGAAAGTGGGGTGAAGTGGGAGATAAAGTCAAAGTCTACGAA 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 GAGATACCAAAAACAAAGAGAAAGTGGGGTGAAGTGGGAGATAAAGTCAAAGTCTACGAA 1189
Query 1199 GAATGAGGTTGATGTTGTTTGATGTGTTCTCTGAAAGAAGCCGTATTTTTCGTAGAGTTT 1258
|||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 1190 GAATGAGGTTGAGGTTGTTTGATGTGTTCTCTGAACGAAGCCATATTTTTCGTAGAGTTT 1249
Query 1259 TGGTTCTTTTACCTACT-ACTACATAACCACTCAAAGGGACAtttctttttctttttttt 1317
|||||||||||||||| |||||| ||||| |||| ||||||||||||||||||||||
Sbjct 1250 TGGTTCTTTTACCTACGCACTACAAAACCATTCAA-GGGACATTTCTTTTTCTTTTTT-- 1306
Query 1318 AAATATATGGTTGCAAT 1334
|||||||||||||||||
Sbjct 1307 AAATATATGGTTGCAAT 1323
> AT4G30980.1 | Symbols: LRL2 | LJRHL1-like 2 | chr4:15079243-15081657
REVERSE LENGTH=1230
Length=1230
Score = 333 bits (180), Expect = 3e-90
Identities = 246/278 (88%), Gaps = 3/278 (1%)
Strand=Plus/Plus
Query 452 CTAAAGTCCGAGCTAGGAGAGGTCAAGCAACTGATCCTCATAGTATCGCCGAAAGGTTAC 511
|||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||
Sbjct 434 CTAAAGTCCGAGCTAGGAGAGGTCAAGCCACTGATCCTCACAGTATCGCCGAACGGTTAC 493
Query 512 GAAGAGAGAGAATTGCGGAAAGAATGAAAGCTCTTCAAGAACTCGTTCCTAACGGCAATA 571
| |||||||| || ||||||||||||||| ||||||||||||| || ||||| || || |
Sbjct 494 GGAGAGAGAGGATAGCGGAAAGAATGAAATCTCTTCAAGAACTTGTCCCTAATGGTAACA 553
Query 572 AGACAGACAAGGCATCGATGCTCGATGAGATTATAGATTATGTCAAGTTTTTACAACTCC 631
|||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 554 AGACAGACAAAGCATCAATGCTCGATGAGATTATCGATTATGTCAAGTTCTTACAGCTCC 613
Query 632 AAGTCAAGGTACTGAGCATGAGCAGATTGGGAGGTGCTGCTTCAGTTTCTTCTCAAATCT 691
||||||||||||| |||||||| ||| |||| ||||||||||| | ||||||||||||||
Sbjct 614 AAGTCAAGGTACTAAGCATGAGTAGACTGGGCGGTGCTGCTTCTGCTTCTTCTCAAATCT 673
Query 692 CCGAGGCTG--G-TGGATCCCACGGGAACGCATCCTCC 726
| |||| || | ||||||||||| ||| | ||||||
Sbjct 674 CTGAGGATGCCGGTGGATCCCACGAAAACACCTCCTCC 711
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65662312860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5