BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481288 Length=1224 Score E Sequences producing significant alignments: (Bits) Value AT2G24310.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 739 0.0 > AT2G24310.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47170.1); Has 9168 Blast hits to 2316 proteins in 376 species: Archae - 2; Bacteria - 1905; Metazoa - 1700; Fungi - 1409; Plants - 76; Viruses - 48; Other Eukaryotes - 4028 (source: NCBI BLink). | chr2:10344358-10345510 FORWARD LENGTH=1153 Length=1153 Score = 739 bits (400), Expect = 0.0 Identities = 541/604 (90%), Gaps = 29/604 (5%) Strand=Plus/Plus Query 637 GAGACAACGCCTGTTTCTGCTTCACCGTCGGAAAAAGTTAGGGTTTTTGAGACGAAATGT 696 ||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 562 GAGACGACCCCTGTTTCTGCTTCACCGTCAGAAAAAGTTAGGGTTTTTGAGACGAAATGT 621 Query 697 C---C---TT-C--TGATTCCGTTCCTTTG---TCTTCTCCGCCGTCTGTTGCGGCCGAC 744 | | || | |||||||||||||||| ||||||||||||||||||||||||||| Sbjct 622 CATTCTGATTCCGGTGATTCCGTTCCTTTGTCTTCTTCTCCGCCGTCTGTTGCGGCCGAC 681 Query 745 GATGTTAGGGTTCCGGCAAAGCATCTTGATTCTGATTCTTCTCCTCCGACTGCAATCGGA 804 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 682 GATGTTAGGGTTCCGGCAAAGCATCTTGATTCTGATTCTTCTCCTCCGACTGCAATCGGA 741 Query 805 AGAACCATGGGTTTGGTAAAACAACTTGTTTCTGCTTCTGTGAGTTTCGATTCTGCTTCT 864 ||||| |||| ||| |||||||||| |||||||||||| | | ||||||||||| Sbjct 742 AGAACTATGGTTTTAGTAAAACAACGAATTTCTGCTTCTG--A----CAATTCTGCTTCT 795 Query 865 TCGTCTGCAAGTGAAGGGATCAAGACCTCTGAAGCTGAAAGTTCTGGTGGAGATTT-GCC 923 ||||||||||||||||||| |||| |||| || |||||| |||||||| || ||| ||| Sbjct 796 TCGTCTGCAAGTGAAGGGACCAAGGTCTCTAAAACTGAAAATTCTGGTG-AGGTTTTGCC 854 Query 924 ATTTAAAGAAATCATCGAAGCACTTCTTCGTAACAGTGGAGAGAATCTCAAAGAAAGAGA 983 ||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||||||| Sbjct 855 TTTTAAAGAAATTATCGAAGCTCTTCTTCGTAACAGTGGAGAGAAACTCAATGAAAGAGA 914 Query 984 TGATAAAGTTAGCTATGTTGAGATTCTCAAACAATGTGGTTTAAAATTCCCTAAATGATT 1043 |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 915 TGATAAAGTTAGCTATGTTGAGATTCTCAAGCAATGTGGTTTGAAATTCCCTAAATGATC 974 Query 1044 GATTACAGATTTAGTAAGTATTATCTTTCTCTGTTTTAGTATGTTCTTGTTGTTTCTGTT 1103 | |||| |||||||||||||||||||||||||||| ||||||| ||||||||||| Sbjct 975 C-T----GATT-AGTAAGTATTATCTTTCTCTGTTTTAGTTTGTTCTTTTTGTTTCTGTT 1028 Query 1104 TCGGGATTACGCATTCAGATCTTTCCTTTTTTGTTGATATGAATGCGTCGGGGaaaaaa- 1162 |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1029 TCGGGATTACGCGTTCAGATCTTTCCTTTTTTGTTGATATGAATGCGTCGGGGTAAAAAG 1088 Query 1163 aGTTGGGAGCTTTTG--TGTTCTGTTGCTTCAACTATAAGTAATGATAAGTATTTTGTTC 1220 |||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||| Sbjct 1089 AGTTGGGAGCTTTTTAATGTTCTGTAGCTTCAACTACAAGTAATGATAAGTATTTTGTTC 1148 Query 1221 AAAT 1224 ||| Sbjct 1149 GAAT 1152 Score = 645 bits (349), Expect = 0.0 Identities = 466/521 (89%), Gaps = 13/521 (2%) Strand=Plus/Plus Query 1 AAAATGGCGGAAAATGTTGGAAGCGACTCGAGCGAATTCGAAAGCATCACTTCTTCTCAG 60 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1 AAAATGGCGGAAAATGTTGGAAGCGACTCGAGCGAATTCGAAAGCATCTCTTCTTCTCAG 60 Query 61 AAATCTTACCTCAAAAACTGTCCTTTCGCCGGTCACGAACCTCTTCCGACGAAATCGACG 120 ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| Sbjct 61 AAATCTTACCTCAAAAACTGTCCTTTCGCCGGTCACGAAGCTCTTCCGACAAAATCGACG 120 Query 121 GATTCCGACAACACTGAGGTTCTCGGAAACCAGATTTCTCCGGCGATTGTTAAAACTCCG 180 ||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||| Sbjct 121 GATTCTGACAACACTGAGGTTCTCGGGAACCAGATTTCTCCGGCGGTTGTTAAAACTCCG 180 Query 181 GTTCTCTCGTTCTCTTCTCCGACTAGCCTCGATTCCATCAACGATGAAGTCTTCCGTACT 240 |||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||| Sbjct 181 ATTCTCTCGTTCTCTTCTCCGACTAGCCTCGATTCTATCAACGATGACGTCTTTCGTACT 240 Query 241 CCTCCTGAGAACGCTTCTCTCTCCTCTGCCACTGAATCGGAACCCAGAGTTAGGGTTTCG 300 |||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 241 CCTCCTGAGAACGCGTCTCTCTCCTCTGCCGCTGAATCGGAACCCAGAGTTGGGGTTTCG 300 Query 301 GAGATTAAGCTCCGAGGAGGTAC-A-TCT--C--C---GTCTTCTGA-GGCCAAAACAAT 350 ||||||||||||| ||||||| | | ||| | | || |||| | ||| | || | Sbjct 301 GAGATTAAGCTCCAAGGAGGTTCGAATCTGACAACTCCGTTTTCT-ATGGCTGAGACGAC 359 Query 351 GCCCGTTTCTTCTTCATCTTCTCTTCCAGAAGCAAATGTTAGGGTTTC-GAAGTCGAATT 409 || ||||||||||| | |||||||| | | ||||||||||||||| || |||||||| Sbjct 360 GCTTGTTTCTTCTTCGCCGTCTCTTCCGGCGGAAAATGTTAGGGTTTCAGA-GTCGAATT 418 Query 410 TGAAATCTCCGTCTTCTACGGCCAAAACGCCGCCTGTTTCTACTTCTCCGTTGGTGAATG 469 |||||||| | |||||||||||||||||| ||||||||||| |||| |||| || |||| Sbjct 419 TGAAATCTTCTTCTTCTACGGCCAAAACGACGCCTGTTTCTGCTTCACCGTCCGTAAATG 478 Query 470 TTAGGGTTTCGGAGTCGAATTTGAAGTCTCCGTCTTCTACG 510 |||||||||||||||||||||||| ||| ||||||| ||| Sbjct 479 CTAGGGTTTCGGAGTCGAATTTGAACTCTTCGTCTTCGACG 519 Score = 187 bits (101), Expect = 2e-46 Identities = 146/166 (88%), Gaps = 9/166 (5%) Strand=Plus/Plus Query 526 TCGAATTTGAAATCTCCGTCTTCTACGGCCAAAACGACGCCTGTTTCTGCTTCACCGTCG 585 ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 412 TCGAATTTGAAATCTTCTTCTTCTACGGCCAAAACGACGCCTGTTTCTGCTTCACCGTCC 471 Query 586 GTAAATGTTAGGGTTTCGGAGACGAATTTGAAATCTCTGTCTTCTACGGCGGAGACAACG 645 ||||||| ||||||||||||| |||||||||| |||| || ||| || || | | | Sbjct 472 GTAAATGCTAGGGTTTCGGAGTCGAATTTGAA--CTCT-TCGTCTTCGACG-A--C--C- 522 Query 646 CCTGTTTCTGCTTCACCGTCGGAAAAAGTTAGGGTTTTTGAGACGA 691 |||||||||| |||||| || ||||||||||||||||||||||||| Sbjct 523 CCTGTTTCTGTTTCACCCTCAGAAAAAGTTAGGGTTTTTGAGACGA 568 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60140252910 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5