BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481288
Length=1224
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24310.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 739 0.0
> AT2G24310.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G47170.1);
Has 9168 Blast hits to 2316 proteins in 376 species: Archae
- 2; Bacteria - 1905; Metazoa - 1700; Fungi - 1409; Plants
- 76; Viruses - 48; Other Eukaryotes - 4028 (source: NCBI BLink).
| chr2:10344358-10345510 FORWARD LENGTH=1153
Length=1153
Score = 739 bits (400), Expect = 0.0
Identities = 541/604 (90%), Gaps = 29/604 (5%)
Strand=Plus/Plus
Query 637 GAGACAACGCCTGTTTCTGCTTCACCGTCGGAAAAAGTTAGGGTTTTTGAGACGAAATGT 696
||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 562 GAGACGACCCCTGTTTCTGCTTCACCGTCAGAAAAAGTTAGGGTTTTTGAGACGAAATGT 621
Query 697 C---C---TT-C--TGATTCCGTTCCTTTG---TCTTCTCCGCCGTCTGTTGCGGCCGAC 744
| | || | |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 622 CATTCTGATTCCGGTGATTCCGTTCCTTTGTCTTCTTCTCCGCCGTCTGTTGCGGCCGAC 681
Query 745 GATGTTAGGGTTCCGGCAAAGCATCTTGATTCTGATTCTTCTCCTCCGACTGCAATCGGA 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 GATGTTAGGGTTCCGGCAAAGCATCTTGATTCTGATTCTTCTCCTCCGACTGCAATCGGA 741
Query 805 AGAACCATGGGTTTGGTAAAACAACTTGTTTCTGCTTCTGTGAGTTTCGATTCTGCTTCT 864
||||| |||| ||| |||||||||| |||||||||||| | | |||||||||||
Sbjct 742 AGAACTATGGTTTTAGTAAAACAACGAATTTCTGCTTCTG--A----CAATTCTGCTTCT 795
Query 865 TCGTCTGCAAGTGAAGGGATCAAGACCTCTGAAGCTGAAAGTTCTGGTGGAGATTT-GCC 923
||||||||||||||||||| |||| |||| || |||||| |||||||| || ||| |||
Sbjct 796 TCGTCTGCAAGTGAAGGGACCAAGGTCTCTAAAACTGAAAATTCTGGTG-AGGTTTTGCC 854
Query 924 ATTTAAAGAAATCATCGAAGCACTTCTTCGTAACAGTGGAGAGAATCTCAAAGAAAGAGA 983
||||||||||| |||||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct 855 TTTTAAAGAAATTATCGAAGCTCTTCTTCGTAACAGTGGAGAGAAACTCAATGAAAGAGA 914
Query 984 TGATAAAGTTAGCTATGTTGAGATTCTCAAACAATGTGGTTTAAAATTCCCTAAATGATT 1043
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 915 TGATAAAGTTAGCTATGTTGAGATTCTCAAGCAATGTGGTTTGAAATTCCCTAAATGATC 974
Query 1044 GATTACAGATTTAGTAAGTATTATCTTTCTCTGTTTTAGTATGTTCTTGTTGTTTCTGTT 1103
| |||| |||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 975 C-T----GATT-AGTAAGTATTATCTTTCTCTGTTTTAGTTTGTTCTTTTTGTTTCTGTT 1028
Query 1104 TCGGGATTACGCATTCAGATCTTTCCTTTTTTGTTGATATGAATGCGTCGGGGaaaaaa- 1162
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1029 TCGGGATTACGCGTTCAGATCTTTCCTTTTTTGTTGATATGAATGCGTCGGGGTAAAAAG 1088
Query 1163 aGTTGGGAGCTTTTG--TGTTCTGTTGCTTCAACTATAAGTAATGATAAGTATTTTGTTC 1220
|||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1089 AGTTGGGAGCTTTTTAATGTTCTGTAGCTTCAACTACAAGTAATGATAAGTATTTTGTTC 1148
Query 1221 AAAT 1224
|||
Sbjct 1149 GAAT 1152
Score = 645 bits (349), Expect = 0.0
Identities = 466/521 (89%), Gaps = 13/521 (2%)
Strand=Plus/Plus
Query 1 AAAATGGCGGAAAATGTTGGAAGCGACTCGAGCGAATTCGAAAGCATCACTTCTTCTCAG 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 AAAATGGCGGAAAATGTTGGAAGCGACTCGAGCGAATTCGAAAGCATCTCTTCTTCTCAG 60
Query 61 AAATCTTACCTCAAAAACTGTCCTTTCGCCGGTCACGAACCTCTTCCGACGAAATCGACG 120
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 61 AAATCTTACCTCAAAAACTGTCCTTTCGCCGGTCACGAAGCTCTTCCGACAAAATCGACG 120
Query 121 GATTCCGACAACACTGAGGTTCTCGGAAACCAGATTTCTCCGGCGATTGTTAAAACTCCG 180
||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 121 GATTCTGACAACACTGAGGTTCTCGGGAACCAGATTTCTCCGGCGGTTGTTAAAACTCCG 180
Query 181 GTTCTCTCGTTCTCTTCTCCGACTAGCCTCGATTCCATCAACGATGAAGTCTTCCGTACT 240
|||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 181 ATTCTCTCGTTCTCTTCTCCGACTAGCCTCGATTCTATCAACGATGACGTCTTTCGTACT 240
Query 241 CCTCCTGAGAACGCTTCTCTCTCCTCTGCCACTGAATCGGAACCCAGAGTTAGGGTTTCG 300
|||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 241 CCTCCTGAGAACGCGTCTCTCTCCTCTGCCGCTGAATCGGAACCCAGAGTTGGGGTTTCG 300
Query 301 GAGATTAAGCTCCGAGGAGGTAC-A-TCT--C--C---GTCTTCTGA-GGCCAAAACAAT 350
||||||||||||| ||||||| | | ||| | | || |||| | ||| | || |
Sbjct 301 GAGATTAAGCTCCAAGGAGGTTCGAATCTGACAACTCCGTTTTCT-ATGGCTGAGACGAC 359
Query 351 GCCCGTTTCTTCTTCATCTTCTCTTCCAGAAGCAAATGTTAGGGTTTC-GAAGTCGAATT 409
|| ||||||||||| | |||||||| | | ||||||||||||||| || ||||||||
Sbjct 360 GCTTGTTTCTTCTTCGCCGTCTCTTCCGGCGGAAAATGTTAGGGTTTCAGA-GTCGAATT 418
Query 410 TGAAATCTCCGTCTTCTACGGCCAAAACGCCGCCTGTTTCTACTTCTCCGTTGGTGAATG 469
|||||||| | |||||||||||||||||| ||||||||||| |||| |||| || ||||
Sbjct 419 TGAAATCTTCTTCTTCTACGGCCAAAACGACGCCTGTTTCTGCTTCACCGTCCGTAAATG 478
Query 470 TTAGGGTTTCGGAGTCGAATTTGAAGTCTCCGTCTTCTACG 510
|||||||||||||||||||||||| ||| ||||||| |||
Sbjct 479 CTAGGGTTTCGGAGTCGAATTTGAACTCTTCGTCTTCGACG 519
Score = 187 bits (101), Expect = 2e-46
Identities = 146/166 (88%), Gaps = 9/166 (5%)
Strand=Plus/Plus
Query 526 TCGAATTTGAAATCTCCGTCTTCTACGGCCAAAACGACGCCTGTTTCTGCTTCACCGTCG 585
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 412 TCGAATTTGAAATCTTCTTCTTCTACGGCCAAAACGACGCCTGTTTCTGCTTCACCGTCC 471
Query 586 GTAAATGTTAGGGTTTCGGAGACGAATTTGAAATCTCTGTCTTCTACGGCGGAGACAACG 645
||||||| ||||||||||||| |||||||||| |||| || ||| || || | | |
Sbjct 472 GTAAATGCTAGGGTTTCGGAGTCGAATTTGAA--CTCT-TCGTCTTCGACG-A--C--C- 522
Query 646 CCTGTTTCTGCTTCACCGTCGGAAAAAGTTAGGGTTTTTGAGACGA 691
|||||||||| |||||| || |||||||||||||||||||||||||
Sbjct 523 CCTGTTTCTGTTTCACCCTCAGAAAAAGTTAGGGTTTTTGAGACGA 568
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60140252910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5