BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481291
Length=1742
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24350.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) fami... 2510 0.0
> AT2G24350.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr2:10361126-10364492 FORWARD LENGTH=1996
Length=1996
Score = 2510 bits (1359), Expect = 0.0
Identities = 1629/1758 (93%), Gaps = 24/1758 (1%)
Strand=Plus/Plus
Query 1 AATCCACCGGCGACGAGCGAAATTTCGAGAATCGCGGCCG-CGAGAAGTGCAAGG-TCAG 58
||| ||||||||||||||||||||||||||||||||| || | |||||| ||||| | ||
Sbjct 46 AATTCACCGGCGACGAGCGAAATTTCGAGAATCGCGG-CGACTAGAAGTACAAGGAT-AG 103
Query 59 TGAATACGAAGATGACT--A--A--AGATGGACTCACATTTCGGATGTCGAGAGAATCGG 112
|| |||||||||||||| | | ||||||||||||||||| ||||||||||| |||||
Sbjct 104 TG-ATACGAAGATGACTAAAGCAGTAGATGGACTCACATTTCCGATGTCGAGAGTATCGG 162
Query 113 AGTCGGCTTCTCGACTTAAAACCTTCATCTCCGATATGCTTCCTCGCTTCACTGACGATT 172
|||| |||||||||||||||||| |||| |||||||||||||||||||| ||||||||||
Sbjct 163 AGTCAGCTTCTCGACTTAAAACCATCATTTCCGATATGCTTCCTCGCTTTACTGACGATT 222
Query 173 ACTCCGACGACCT-TGCTGAGTATGTTACGGTGCTTGTTTGTAATGGAAAGAGTCAGAGA 231
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 ACTCCGACGACCTCT-CTGAGTATGTTACGGTGCTTGTTTGTAATGGAAAGAGTCAGAGA 281
Query 232 CAGGCAAGCGAAGATTTGGAGGCATTTCTTAGGGAACAATCTTGGAAATTTGTTACCTGC 291
||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||
Sbjct 282 CAGGCAAGCGAAGATTTGGAGGCATTTCTTAAGGAGCAATCTTGGAAATTTGTTGTCTGC 341
Query 292 TTATGGGAGCTTCTAGTGAACTACTTCTCTCAAATTAATTCTGCTTCTGGACCTAAGACT 351
|| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 342 TTGTGGGAGCTTCTAGTGAAGTACTTCTCTCAAAGTAATTCTGCTTCTGGACCTAAGACT 401
Query 352 GCTGTTGACTTTGGCGT-TAATGATACTCTAATTGAACAAGGTTTAAGCTCCAAAAAGCA 410
| ||||||||||||| | ||||||||||||||| |||||||||||||||||| |||| |
Sbjct 402 GATGTTGACTTTGGC-TCTAATGATACTCTAATCAAACAAGGTTTAAGCTCCAGAAAGTA 460
Query 411 TGATGATTATGATTGCAAAGCTGCTGGTGCTACTAATTCGATGAATGAACAGCTGATATC 470
|||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct 461 TGATGATTATGATTGCAAAGCTGCCGATGGTACTAATTCGATGAATGAACAGCTGATATC 520
Query 471 AGTTACTGCTCCCATAGAAGACATTGAGGCTCCTGTATCACCAAAAGTTGAAAAAATGAA 530
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 521 AGTTACTGCTCCCATAGATGACATTGAGGCTCCTGTATCACCAAAAGTTGAAAAAATGAA 580
Query 531 GATGTTACGACAAGAGCTCATTGATAGCCCTTGTAGAAGGGCACAACGAAGAAAGAAAGA 590
||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 581 GATGTCACGACAAGAGCTCATTGATAGCCCTTGTACAAGGGCACGGCGAAGAAAGAAAGA 640
Query 591 AGATTGGAACTCGTCTGGTTACTCTAGAAAAATACTGCGCTCGGTCATCGTTTCAGCCAC 650
| ||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||
Sbjct 641 AAATTGGAACTCGTCTGGTTACTCTAGAAAAGTACTGCGCTCTGTCATTGTTTCAGCCAC 700
Query 651 TAAGCAACCATGTGATAGGAATCCTGCTAAATATGAAAAGTCTATGAATGAAAGGAGTAG 710
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 TCAGCAACCATGTGATAGGAATCCTGCTAAATATGAAAAGTCTATGAATGAAAGGAGTAG 760
Query 711 AATCCTAAAGAAGCACCCATACTTGCCAGAAAGAGAACTGGATTCTCAGTTTGTTCCTAT 770
|| ||||||||||| |||||||| |||||||||||| ||||||||| ||||| |||| |
Sbjct 761 AACCCTAAAGAAGCGCCCATACTCACCAGAAAGAGAATTGGATTCTCGGTTTGCTCCT-T 819
Query 771 -AGGAAGAGCTGTGTCTGCAAGATACCATGATGCATCTCCACACCAAGAAACGGCGCCTC 829
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 820 CAGGAAGAGCTGTGTCTGCAAGATACCATGATGCATCTCTACACCAAGAAACGGAGCCTC 879
Query 830 ATGTTAGTGTCTGGGATCGTTTGGGACGAGCAAGCTCCAAACGTGTTCTTGACTCAGAAA 889
|||||||||| |||||||||||||| |||||||||||| || ||||||||||| ||||||
Sbjct 880 ATGTTAGTGTTTGGGATCGTTTGGGCCGAGCAAGCTCCGAATGTGTTCTTGACACAGAAA 939
Query 890 GCCGTACATTGTCTAAGTCTGGTATCAAGGCACATGAAAAC-AAAGGGGTTCAGCAGCAT 948
|||||||||||||||||| ||||||| || ||| || |||| |||| | ||||||||||
Sbjct 940 GCCGTACATTGTCTAAGTTTGGTATCCAGACACGTG-AAACAAAAGTGCATCAGCAGCAT 998
Query 949 GGACCAGTATTTCCTGAAGTGTATAGTGAACAACATAGCGAGATATTTCAAAGAGAAGTT 1008
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 999 GGACCAGTATTTCCTGCAGCGTATAGTGAACAACATAGCGAGATATTTCAAAGAGAAGTT 1058
Query 1009 CCTGCAGTTGGTTACAGGCACAGAGTTTCCCAATCCGATAAAGCTAGGAAACCTGAGAGT 1068
| ||||||||||||||||||||||||| |||||| |||||||| ||||||||| |||||
Sbjct 1059 CTTGCAGTTGGTTACAGGCACAGAGTTCCCCAATTCGATAAAGATAGGAAACCCAAGAGT 1118
Query 1069 GGAATTATCACATCCACTGAACCGCATATTGCATATAACCTGAACCGAAAGAGGCGTTAT 1128
| || |||||||||||||||||||||||||||||||||||| | | ||||||| ||||||
Sbjct 1119 GAAACTATCACATCCACTGAACCGCATATTGCATATAACCTCAGCAGAAAGAGACGTTAT 1178
Query 1129 GGCATCGTCAACCCCAATTCAGGAGAGTTTAGC-AGTGTTCTCCAATATAAGCAAGCTGA 1187
||||| |||| |||||||||||||||||||||| | ||||| ||||||||||||||||||
Sbjct 1179 GGCATGGTCAGCCCCAATTCAGGAGAGTTTAGCTA-TGTTCCCCAATATAAGCAAGCTGA 1237
Query 1188 AGAGGATGTTGAAAAGCCAAGCCTTCTCTCCTATCAGTCCACAAAGCCAGATATCTTTTC 1247
| | ||| |||||||||||||||| |||||| ||||||| ||||||| |||||| |||||
Sbjct 1238 ACAAGATTTTGAAAAGCCAAGCCTGCTCTCCCATCAGTCAACAAAGCAAGATATTTTTTC 1297
Query 1248 AGAAATAAAGAACGTGAAAGAAAAGATGCAAGAACTAGAACTCCGAATTATTCAATCAAA 1307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1298 AGAAATAAAGAACGTGAAAGAAAAGATGCAAGAACTAGAACTCCGAATTATTCAATCAAA 1357
Query 1308 GCAGTTGAAGAAACAGAAAGTTGAAGAACTCAAACCCTCACCACAATCTGGCGAATCACA 1367
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1358 GCAGTTGAAGAAACAGAAAGTTGAAGAACGCAAACCCTCACCACAATCTGGCGAATCACA 1417
Query 1368 GTATCAGCAAGATGTCACAGAATCAAGAATCATACATGTTACTAACGTAAACTATGCAGC 1427
||||||| |||||||| ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1418 GTATCAGGAAGATGTCTCAGAATCAAGAGTCATACATGTTACTAACGTATACTATGCAGC 1477
Query 1428 AAAGAAAGAAGCTATATCAATGTTCTTCAGCAGCAAGTGTGGAGCTGTCGAAAACGTGAC 1487
||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
Sbjct 1478 AAAGAAAGAAGCTATATCAATGTTCTTCAGCAGCAAGTGTGGAGCTGTCCAAAATGTTAT 1537
Query 1488 AATTGTAACTGATCCAGTAACTCGGCATCCAAAGGGTTCTGCTTTTGTGACTTTTGCTAC 1547
| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1538 AGTTGTAACTGATCCAGTAACTCGCCATCCAAAGGGTACTGCTTTTGTGACTTTTGCTAC 1597
Query 1548 AAAGGAGTCAGTTAACCAAGCAATAGCTCTGAGCGGCACAATGTTCTATTCAAGACCCAT 1607
||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1598 AAAGGAGTCAGTTGGCAAAGCAGTAGCTCTGAGCGGCACAATGTTCTATTCAAGACCCAT 1657
Query 1608 CAAGGTTGGGAGGCACGTGATAGCTTCTGGAGTAGTGTCAGCA-C-C-ACAGATAGTTAC 1664
||||||| | | ||||||||||||||||||||||||||||||| | | ||||||||||||
Sbjct 1658 CAAGGTTCGCATGCACGTGATAGCTTCTGGAGTAGTGTCAGCAGCACCACAGATAGTTAC 1717
Query 1665 TGGAAGTTAAACCAAAAGGAATGGTAATACACAAAGAGCCTAAAAACATCACCTTAGCGA 1724
||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||| | |
Sbjct 1718 TGGAAGTTAAACCCAAATGAATGGTAATACACAAAGAGCCTACAAACATCACCTTAACAA 1777
Query 1725 CACCGTTGTACAGTCCCT 1742
| ||||||||||||||||
Sbjct 1778 CGCCGTTGTACAGTCCCT 1795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86144135220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5