BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481295
Length=729
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24400.1 | Symbols: | SAUR-like auxin-responsive protein fa... 1088 0.0
> AT2G24400.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr2:10377791-10378586 REVERSE LENGTH=796
Length=796
Score = 1088 bits (589), Expect = 0.0
Identities = 674/714 (94%), Gaps = 10/714 (1%)
Strand=Plus/Plus
Query 1 ACGCTAGACAAAACATAGTAGTACCAAACCCATTTCTTGTC--TTGTCTTCTATCTCCAC 58
|||||||||||||| | |||||||||| | |||||||| |||||||||||||||||
Sbjct 4 ACGCTAGACAAAAC--A-TAGTACCAAA--C--TTCTTGTCTTTTGTCTTCTATCTCCAC 56
Query 59 CATGGAAGCCAAGAAGTCAAACAAGATCAGAGAGATCGTGAAGCTTCAACAGCTCCTCAA 118
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 57 CATGGAAGCCAAGAAGTCAAACAAGATCAGAGAGATCGTTAAGCTTCAACAGCTTCTCAA 116
Query 119 GAAATGGCGaaaacaagcaattgcatcaaaagcagccaacaacaacaacgaagacaacaa 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 GAAATGGCGAAAACAAGCAATTGCATCAAAAGCAGCCAACAACAACAACGAAGACAACAA 176
Query 179 cagcaaTGGCGGGGGAAGCAAGGGCATCAAGTTTCTGAAGAGGACACTGTCATTTACAGA 238
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 177 TAGCAGTGGCGGGGGAAGCAAGAGCATCAAGTTTCTGAAGAGGACACTGTCATTTACAGA 236
Query 239 TGTAACATCTGTGCCTAAAGGGTATCTAGCTGTCTCTGTTGGGTTAGAGAAGAAGAGGTA 298
||||||| ||||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 237 TGTAACAGCTGTGCCTAAAGGGTATCTAGCTGTTTCGGTCGGGTTAGAGAAGAAGAGGTA 296
Query 299 CACAATACCAACAGAGTACCTCAGCCACCAAGCTTTCTATGTTCTTCTGCGTGAGGCAGA 358
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 297 CACAATACCAACCGAGTACCTCAGCCATCAAGCTTTCTATGTTCTTCTGCGTGAGGCAGA 356
Query 359 AGAAGAGTTCGGGTTTCAACAAACCGGTGTCTTGAGGATTCCGTGTGAAGTTTCTGTTTT 418
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 357 AGAAGAGTTCGGGTTTCAACAAGCCGGTGTCTTGAGGATTCCTTGTGAAGTTTCTGTTTT 416
Query 419 TGAGAGCATATTGAAGATGATGGAGGAGAAGAACGAAGGGTACCTGGTGACGACAACCAC 478
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||
Sbjct 417 TGAGAGCATATTGAAGATAATGGAGGAGAAGAACGAAGGGTACCTGGTGACGCCAATAAC 476
Query 479 AGCTAAGCAGGAGTGTAAGTTCAATGCAGCAGCAGATGATAAGACGAGTTACCGGCATCC 538
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 477 AGCTAAGCAGGAATGTAAGTTCAATGCAGCAGCAGATGATAAGACGAGTTACCAGCATCC 536
Query 539 ATCGGACTGCCCTAAGACTCCTTCACACCAACCTCACAACAGCCCAATGTGCAGATAGTT 598
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 ATCAGACTGTCCTAAGACTCCTTCACACCAACCTCACAACAGCCCAATGTGCAGATAGTT 596
Query 599 TTGTTCATTGCTTGCTTTTGCATCTTCTTCTTCCTCCTCTTGAACTGACTTGAGCCATTC 658
||||||||||||||||| ||||||||||| |||||||||||| || | |||||||||||
Sbjct 597 TTGTTCATTGCTTGCTTCTGCATCTTCTTTTTCCTCCTCTTGTGCTAATTTGAGCCATTC 656
Query 659 TGCTTATTCCCACTTTTTCTCTAGGAATATGGATATATGTGCTTCAAA-TTTCT 711
|||||||||||||||||||||||||||||||||| | ||||||| ||| |||||
Sbjct 657 TGCTTATTCCCACTTTTTCTCTAGGAATATGGATTTGTGTGCTTTAAAATTTCT 710
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35364839488
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5