BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481296
Length=1891
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24420.1 | Symbols: | DNA repair ATPase-related | chr2:1038... 2811 0.0
> AT2G24420.1 | Symbols: | DNA repair ATPase-related | chr2:10380026-10383405
FORWARD LENGTH=1932
Length=1932
Score = 2811 bits (1522), Expect = 0.0
Identities = 1773/1891 (94%), Gaps = 30/1891 (2%)
Strand=Plus/Plus
Query 22 AACGAAAAAAT-TTCTTGTTGGCAAATCTCCGGCGAAATCATC-TTCGCTGTTTTCTAAC 79
|||| |||||| |||||||||||||||||||||||| |||||| ||| | |||| | |
Sbjct 49 AACG-AAAAATCTTCTTGTTGGCAAATCTCCGGCGAGATCATCTTTC-TTATTTTGTTCC 106
Query 80 ACGAAACTTTCAGACATGGCGGCCGCGAAACTCGTGGC-TTGGTTACTAC-TCTTCGCCT 137
||| || ||||||||||||||||||||||||||||||| || |||||| | || ||||||
Sbjct 107 ACGGAAGTTTCAGACATGGCGGCCGCGAAACTCGTGGCGTT-GTTACTTCTTC-TCGCCT 164
Query 138 TGGTTATCAATTTCACCACTTGTATCTTTGCCGACGCTGGAATCAACGGTGGCGAAGAAC 197
||||| |||||||||||||||||||||||||||||||||||||| |||| ||||| ||||
Sbjct 165 TGGTTTTCAATTTCACCACTTGTATCTTTGCCGACGCTGGAATCGACGGCGGCGATGAAC 224
Query 198 CGAAACTTAGATCCGACGGCGGTGAAATCGAATTGGATCAGCTTAATGCTAAAATCCGTG 257
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 225 CGAAACTTAGATCCGACGGCGGTGATATCGAATTGGATCAGCTTAATGCTAAAATCCGTG 284
Query 258 CCCTAGAATCTCAAATTGATGATAAAACTAAGGAACTTAAAGGAAGAGAAGAGTTAGTAA 317
||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 285 CCCTAGAATCTCAGATTGATGATAAAACCAAGGAACTTAAAGGCAGAGAAGAGTTAGTAA 344
Query 318 CAGAGAAAGACAAACTTCTTCAAGAGAGACAAGACAAAGTTGCTTCTTTGGAGACTGAGG 377
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 CAGAGAAGGAGAAACTTCTTCAAGAGAGACAAGACAAAGTTGCTTCTTTGGAGACTGAGG 404
Query 378 TTTCTTCACTAAGGAAAAAAGGTTCATCAGATTCTGTGGAACTGTTGAGTAAAGCTCAAG 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 TTTCTTCACTAAGGAAAAAAGGTTCATCAGATTCTGTGGAACTGTTGAGTAAAGCTCAAG 464
Query 438 CACGAGCTGCTGAATTAGAGAAGCAGGTTGAGGTACTCAAGAACTTTCTGGAGCaaaaaa 497
|||||||| |||||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 465 CACGAGCTACTGAATTAGAGAAGCAGGTTGAGGTACTTAAGAAATTTCTGGAGCAGAAAA 524
Query 498 aCAAGGAGAAAGAATCGATAGAAGCTCGGACTAGTGAAGCCGAGAAGAAGCTAAACAAAT 557
||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||| |||
Sbjct 525 ACAAGGAGAAAGAATTGATAGAAGCTCAGACTAGTGAAACCGAGAAGAAGCTAAACGAAT 584
Query 558 TGAACTCGAAACTTGAGAAACTTCACAAGACAAATGAAGAACAGAAGAATAAAATACGAA 617
||||||||| | | |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 585 TGAACTCGAGAGTGGAGAAACTTCACAAGACAAATGAAGAGCAGAAGAACAAAATACGAA 644
Query 618 AACTTGAGCGTGCTCTTAAAATTTCTGAGGAAGAAATGTTGCGGACAAAGCATGAAGCAA 677
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 645 AACTTGAGCGTGCTCTTAAAATTTCTGAGGAAGAAATGTTGCGGACAAAGCATGAAGCCA 704
Query 678 CCACAAAGGCTAAAGAACTGATGGAGGTTCATGGGGCGTGGCTTCCCCCTTGGTTTGCTG 737
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 CCACAAAGGCTAAGGAACTGATGGAGGTTCATGGGGCGTGGCTTCCCCCTTGGTTTGCTG 764
Query 738 TACACTGGAGTAATTTTCAGACTGTTGCTGGGACACACTGGGACGCCCACGGCAAACCAG 797
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 TACACTGGAGTAGTTTTCAGACTGTTGCTGGGACACACTGGGACGCCCACGGCAAACCAG 824
Query 798 TAATGGAGAAAGTTACTCAGAAGGTGACGCTAGCGAAAAATCAAGCTGAAAAATGGGCTA 857
| ||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||
Sbjct 825 TTATGGAGAAAGTTACTCAAAAGGTGACGTTAGCAAAAAATCAAGCTGAAAAATGGGCTA 884
Query 858 AACCGCACATGGCTAATGTTAAAACTAAATATATTCCAGCCATGAAAGAGACTGTTAAAA 917
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 885 AACCGCACATGGCTAATGTTAAAACTAAATATATTCCAGCCATAAAAGAGACTGTTAAAA 944
Query 918 CGCATGTTGAGCCACACGTTCAAACACTATCTACCAAAGCGAAAGAGGCTTACCATGCTT 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 CGCATGTTGAGCCACACGTTCAAACACTATCTACCAAAGCGAAAGAGGCTTACCATGCTT 1004
Query 978 CCAAGAGTGCGGTTAGTCCACATATTGTCAAGATTCAAGAACATGTAGATCCCTATTACC 1037
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1005 CCAAGAGTGCGGTTACACCACATATTGTCAAGTTTCAAGAACATGTAGATCCCTATTACC 1064
Query 1038 AGGAGGCTAAAAAGTTTAGCAAGCCGTACGTTGATCAAGTAGCCACGGCCACAAAACCAC 1097
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1065 AGGAGGCTAAAAAGTTTAGCAAGCCGTACGTTGATCAAGTGGCCACAGCCACAAAACCAC 1124
Query 1098 ATGTTGATAAGGTGAGAGCTACCATAAAGCCTTACACAAAGAAGACTATTCACTATTACA 1157
||||||||||||||||||||||||| ||||||||||||| ||||||| | ||||||||||
Sbjct 1125 ATGTTGATAAGGTGAGAGCTACCATGAAGCCTTACACAACGAAGACTGTCCACTATTACA 1184
Query 1158 AAGAGTTCCTAGAATCTGCCTCAACGTATCACCATCAGCTTCAAGCCAATGTCGAAACG- 1216
|||||||||| |||||||||||||| |||||||| |||||||||||||||||||||| |
Sbjct 1185 AAGAGTTCCTGGAATCTGCCTCAACTTATCACCACCAGCTTCAAGCCAATGTCGAAA-GT 1243
Query 1217 AAATTGAAGAGCCATGAGCTGATGGAACCTTTTGCCACCAAAGAATTCACTTGGTTTGCA 1276
||| ||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||
Sbjct 1244 AAACTGAAGAGCCATGAGCTGTTGGAACCTTTTGCCACCAAAGAGTTCATTTGGTTTGCA 1303
Query 1277 GCCTCTGCTTTGTTGGCGTTACCTATCTTCATAGTGTACAAATTCCTCTGTTCGCTCTTC 1336
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1304 GCCTCTGCTTTGTTGGCCTTACCCATCTTCATAGTGTACAAATTCCTCTGTTCGCTCTTC 1363
Query 1337 TGCACAAAGACAAAGAAGCCTACCCGACAGCCTCGTCACCATACTCGCCGTAAGGCCAAA 1396
||||||||||| |||||||||| ||||||| ||| ||| ||||||||||||||||||| |
Sbjct 1364 TGCACAAAGACGAAGAAGCCTATCCGACAGTCTCATCAACATACTCGCCGTAAGGCCAGA 1423
Query 1397 AGGGGTCATTCTGACAAGTGAAGTCACATGATT-GTGTTGTTGTCACTTCCTCGTGCTAT 1455
||||||||||||||||| |||||||||||| || |||||||| |||||||||||||||||
Sbjct 1424 AGGGGTCATTCTGACAAATGAAGTCACATGCTTTGTGTTGTTATCACTTCCTCGTGCTAT 1483
Query 1456 AAATATTAGAGGTAAAGACGGGTTTTGATGCGTTCTCTGTGAGCCTTAGCAACACTCTAT 1515
|||||||||||||||||||||||||||||||||||||||||||||| | | ||| |||||
Sbjct 1484 AAATATTAGAGGTAAAGACGGGTTTTGATGCGTTCTCTGTGAGCCTCACCTACAGTCTAT 1543
Query 1516 ATGTTTCCTTCGTTACGTATGAAAGAAATAGCTTATGTTGAGAGGTATCTTTTGGGTCTT 1575
|||||||||||||| ||||||||||||| |||||||||| ||||||||||| ||||| ||
Sbjct 1544 ATGTTTCCTTCGTTGCGTATGAAAGAAACAGCTTATGTT-AGAGGTATCTTATGGGTTTT 1602
Query 1576 CTTTTAATCTCGCTGTGCAAAAGTGTTCTTCACTCTCTCCGTTTTTGAGATGCCTTTTGA 1635
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1603 TTTTTAATCTCGCTGTGCAAAAGTGTTCTTCACTCTCTCTGTTTTTGAGATGCCTTTTGA 1662
Query 1636 ATATAAAGTTTTCAGTCTTTT-TACAGAGAAGATTAA-ATCTAG------T--A--A-GG 1682
||||||||||||||||||||| ||||||||||||| | |||||| | | | ||
Sbjct 1663 ATATAAAGTTTTCAGTCTTTTATACAGAGAAGATTGACATCTAGAGGAAATCTACTAAGG 1722
Query 1683 GCTTGTTTTGTGTATTTTGTGATTCATGTGGATAGATATGGTACTTGCTTC-ATTACTCT 1741
||||| |||||||||||||||||||||||||||| || ||||||||| | | ||||||||
Sbjct 1723 GCTTGGTTTGTGTATTTTGTGATTCATGTGGATAAATTTGGTACTTG-TGCCATTACTCT 1781
Query 1742 TTaaaaaaaCTATCACT-TTTGTCTTTTGTCTTTTTGAAAACTATTTCTCAAAAATCGAA 1800
|||||| | |||||| |||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1782 TTAAAAGCA--ATCACTCTTTGTCTTTTATCTTTTTGAAAACTTTTTCTCAAAAATCGAA 1839
Query 1801 ATCAAATTGGGAATTGTTACAGCTTTTATTTTATTTGTAACTAAAAATCATAGAGCCAGA 1860
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1840 ACCAAATTGGGAATTGTTACAGCTTTTATTTTATTTGTAACTAAAAATCATAGAGCCAGA 1899
Query 1861 CCATAATTGGTTTGACTAGTCTTCGATTCTT 1891
||||||||||||||||||||||| |||||||
Sbjct 1900 CCATAATTGGTTTGACTAGTCTTTGATTCTT 1930
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93624016425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5