BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481300
Length=923
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24440.1 | Symbols: | selenium binding | chr2:10391089-1039... 1142 0.0
AT2G24450.1 | Symbols: FLA3 | FASCICLIN-like arabinogalactan pr... 65.8 7e-10
> AT2G24440.1 | Symbols: | selenium binding | chr2:10391089-10392828
FORWARD LENGTH=923
Length=923
Score = 1142 bits (618), Expect = 0.0
Identities = 812/899 (90%), Gaps = 39/899 (4%)
Strand=Plus/Plus
Query 31 GGAAAAGGAAAAGGGAAAGCTATAGCGAATACGTCGACAAGAGTGCTTCGAAGTATGGGT 90
||| ||||||||||||||||||||||||||| || | || |||||||||| |||| |
Sbjct 57 GGAGAAGGAAAAGGGAAAGCTATAGCGAATA---CG--AGGA-TGCTTCGAAGCATGGAT 110
Query 91 CGGAAGACTCGAAGCGATACTCAGCGAGAAGGTTCTTCTTCTAAGCTTGTGAAGCTCGAA 150
|| |||||||||||||||||| ||||||| ||||||||||||||||| ||||| |||||
Sbjct 111 CGAAAGACTCGAAGCGATACTAAGCGAGATGGTTCTTCTTCTAAGCTCATGAAGATCGAA 170
Query 151 TCTCCagagaagaagaaacgaaagacgacgaaagcgaagaatggtggagcagcgaagaag 210
||||| |||||||||||||| |||||||||||||||||||||| |||||| |||||||||
Sbjct 171 TCTCCGGAGAAGAAGAAACGGAAGACGACGAAAGCGAAGAATGTTGGAGCTGCGAAGAAG 230
Query 211 aaggtcaagaaagaagaGGTAGCTGTGAAAATCGAGAAAGAGGATGAAGAATCTGCGGAG 270
||||| ||||||||||||||||||||||||||| || || ||| | ||||
Sbjct 231 AAGGTAAAGAAAGAAGAGGTAGCTGTGAAAATC------GA-GA--AAG-A-----GGAG 275
Query 271 GAGGAAGATGGTGATGCTGCagagaaagaagaagaagaagaagatgatgacgactccgag 330
|||||||||| ||||||||| || || | |||||| | | ||||||||||||||
Sbjct 276 GAGGAAGATGATGATGCTGC------AG-AG-A-AAGAAG-A-A-GATGACGACTCCGAT 323
Query 331 aagaagaagaTTGTGATCGAGCACTGCAAACAATGCAAATCATTCAGGGAGAGGGCTAAT 390
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 324 AAGAAGAAGATTGTGATCGAGCATTGCAAACAATGCAAATCATTCAAGGAGAGGGCTAAT 383
Query 391 GAGGTGAAGGAAGGTCTAGAGGAAGCTGTCCCTGGCATTGTTGTGACTGTGAATCCTGAT 450
||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||
Sbjct 384 GAGGTGAAGGAAGGTCTAGAGGAAGCTGTTCCTGGCATCATTGTCACTGTGAATCCTGAT 443
Query 451 AAGCCAAGGCGTGGTTGTTTTGAGATTCGAGAGGAAGGTGGTGAAACATTCATCAGTCTT 510
||||||||||||||||| |||||||||||||||||||| || || |||||||||||||||
Sbjct 444 AAGCCAAGGCGTGGTTGCTTTGAGATTCGAGAGGAAGGCGGCGAGACATTCATCAGTCTT 503
Query 511 TTGGCTATGAAGCGCCCATTTACACCAATGAAGGAACTTAACATGGAAGAGGTCATTACT 570
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 504 TTGGCTATGAAGCGCCCATTTACACCGATGAAGGAACTTAACATGGAAGAGGTCATTGCG 563
Query 571 GACATCGTAGAGAAGATTAAATAACATTGCAAGTAGGTTCTACCAATGCCGAGTCTTTTG 630
|||||||||||||||||||| ||||| || ||||||||||||||||||||||||||| |
Sbjct 564 GACATCGTAGAGAAGATTAAGTAACACAGCTAGTAGGTTCTACCAATGCCGAGTCTTTCG 623
Query 631 TTTCTTCCTTGACCCTCGGCAAATAGGCTTCAATATCTGACTATCTAGAGCAACTGCAGG 690
|||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 624 TTTCCTCCTTGGCCCTCGGCTAATAGGCTTCAATATCTGACTATCTAGAGCAACTGCAGG 683
Query 691 ATTTTTTAGTCTTAATTTTGATATATTGGTGAAAACCATTTAAGCACGGTTTCGTCATTT 750
||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 684 ATTTTTTAGGCTTAATTTTGATATATTGGTGAAAACCATTTGAGCACGGTTTCGTCGTTT 743
Query 751 GGCAGTGCTTGATCGGCTTTGTGCAGTTTCTTTATGCTAAAACTTCCTGATATATTTGGG 810
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 744 GGTAGTGCTTGATCGGCTTTGTGCAGTTTCTTTATGCTAAAACTTCCTGATATATATGGG 803
Query 811 ATTAAGTCTGTCTTCGTAATGCTAGTTTGAAGCAATTCGTTTCA---C-TTG-TTGTTGG 865
||||||||||||||||||||||||||||||||||||||||||| | || |||||||
Sbjct 804 ATTAAGTCTGTCTTCGTAATGCTAGTTTGAAGCAATTCGTTTCGTTTCATTTATTGTTGG 863
Query 866 ATTGCGTTTGGCGTT-AATTATGTTATGGATTGGATGAATGAAGATAAAACATTTAGTT 923
|||| |||||||||| ||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 864 ATTGTGTTTGGCGTTCAATTACGTTACGGATTGGATGAATGAAGATAAAACATTTAGTT 922
> AT2G24450.1 | Symbols: FLA3 | FASCICLIN-like arabinogalactan
protein 3 precursor | chr2:10392787-10393976 REVERSE LENGTH=1190
Length=1190
Score = 65.8 bits (35), Expect = 7e-10
Identities = 39/41 (95%), Gaps = 0/41 (0%)
Strand=Plus/Minus
Query 883 TTATGTTATGGATTGGATGAATGAAGATAAAACATTTAGTT 923
||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1190 TTACGTTACGGATTGGATGAATGAAGATAAAACATTTAGTT 1150
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45110264006
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5