BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481301
Length=1185
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24450.1 | Symbols: FLA3 | FASCICLIN-like arabinogalactan pr... 1873 0.0
AT2G24440.1 | Symbols: | selenium binding | chr2:10391089-1039... 65.8 9e-10
> AT2G24450.1 | Symbols: FLA3 | FASCICLIN-like arabinogalactan
protein 3 precursor | chr2:10392787-10393976 REVERSE LENGTH=1190
Length=1190
Score = 1873 bits (1014), Expect = 0.0
Identities = 1135/1192 (95%), Gaps = 13/1192 (1%)
Strand=Plus/Plus
Query 1 GCTGCTCTTAAGGTCTGTATATATACCCAACCTGATCCTCTTATTGCAAACTCAGGCTTT 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCTCCTCTTAAGGTCTGTATATATACCCAACCTGATCCTCTTATTGCAAACTCAGGCTTT 60
Query 61 GAGGTTTGAGCTTTTACTATAGAAAAAATAAGGGTAATAAACAAAAACACCCAAAGATGG 120
|||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||
Sbjct 61 GAGGTTTGAGCTTTTACTATAG-AATAATAAGGGTAATAAACAAAGACACCCAAAGATGG 119
Query 121 GTCTCAAGGTCTCCTCTTCTCTCGTCTGTCTCACCATCTTACTTGGTGTTTCCTCCATTG 180
||||||||||||||||||||||| ||||||||||||||||||| | |||||| |||||||
Sbjct 120 GTCTCAAGGTCTCCTCTTCTCTCCTCTGTCTCACCATCTTACTCGCTGTTTCATCCATTG 179
Query 181 TATCAGCGGTTAACATAACCCGAGTGCTCGAGAAATACCCTGAATTCAGCACCATGACCG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TATCAGCGGTTAACATAACCCGAGTGCTCGAGAAATACCCTGAATTCAGCACCATGACCG 239
Query 241 AGCTTCTTGCCAAGACCGAGCTCACACCAATTATCAACAAACGTCAGACCATCACCGTGC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AGCTTCTTGCCAAGACCGAGCTCACACCAATTATCAACAAACGTCAGACCATCACCGTGC 299
Query 301 TGGCTCTTAGCAATGATGCCATCGGTTCCATCTCTGGTAGACCCGAGGAAGAGCTCAAGA 360
|||| |||| ||| ||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 300 TGGCCCTTAACAACGATGCTATCGGTTCCATCTCTGGTAGACCCGAGGAAGAGGTCAAGA 359
Query 361 ACATTCTTATGAACCATGTGATTCTTGACTACTTTGATGAGCTTAAGCTCAAGGCTCTCA 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 360 ACATTCTTATGAACCATGTGGTTCTTGACTACTTTGATGAGCTTAAGCTCAAGGCTCTCA 419
Query 421 AGGAAAGGAGCACATTGCTCACTACCCTTTACCAGTCCACCGGTTTGGGCCAACAGCAAA 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGGAAAAGAGCACATTGCTCACTACCCTTTACCAGTCCACCGGTTTGGGCCAACAGCAAA 479
Query 481 ACGGTTTCCTCAACTGCACCAAATCTAACGGAAAGATTTACTTTGGTTCTGGTGTGAAAG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ACGGTTTCCTCAACTGCACCAAATCTAACGGAAAGATTTACTTTGGTTCTGGTGTGAAAG 539
Query 541 GCGCTCCTCAAACCGCTGAATACATCACAACTGTTTTCCGTAACCCGTACAATCTCTCTG 600
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 540 GCGCTCCTCAAACCGCTGAATACATCACAACCGTTTTCCGTAACCCGTACAATCTCTCTG 599
Query 601 TGGTCCAGATCAGCATGCCCATTGTGGCTCCTGGACTCGGGTCTCCGGTTAAGGTTCCTC 660
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 600 TGGTCCAGATCAGCATGCCCATTGTGGCACCTGGACTCGGGTCTCCGGTTAAGGTTCCTC 659
Query 661 CACCACCACCCATGTCTTCACCACCAGCCCCATCTCCCAAGAAGGGTGCAGCCACTCCAG 720
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 660 CACCACCACCCATGTCTTCACCACCGGCCCCATCTCCCAAGAAGGGTGCAGCCACTCCAG 719
Query 721 CTCCTGGACCAGCTGAGGAAGAGGATTATGCAGATGCTCCTCCTGGTGCAGCCCCAGAAA 780
|||| | || ||||| |||| ||||||||||||||||||||||||| ||| |||||||
Sbjct 720 CTCCAGCTCCTGCTGATGAAGGGGATTATGCAGATGCTCCTCCTGGTTTAGCTCCAGAAA 779
Query 781 CTGCACCTGCATCTGCTCCATCAGA---TGATTCTCCAGCTCCGGCTCCAGAGCAA-TCT 836
| |||||||||||||| |||||||| ||||||||||||||| |||||||| || |||
Sbjct 780 CCGCACCTGCATCTGCACCATCAGAAAGTGATTCTCCAGCTCCAGCTCCAGAT-AAGTCT 838
Query 837 GGCAAGAAGAAGATGGCTGCAGCTGATGAGGCTGAACCACCTTCTTCTGCTTCTAACGCC 896
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 839 GGCAAGAAGAAGATGGCAGCAGCTGATGAGGCTGAACCACCTTCTTCTGCTTCTAACACC 898
Query 897 GGTTTGAGCTTCGGTGCTGTCCTCGTTCTCGGGTTTGTGGCTAGCTTTGTTGGGTTCTAA 956
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 899 GGTTTGAGCTTCGGTGCTGTCCTTGTTCTCGGGTTTGTGGCTAGCTTTGTTGGGTTCTAA 958
Query 957 GATGGTTTAA-ATCAGAGCGAGTTGAGGATAAGAT-AAACTGATAATGAGACTCGACCAT 1014
|||| ||||| | ||| ||||| |||||||| || |||||||||||||||||||| |||
Sbjct 959 GATGATTTAAGA-CAG--CGAGTCGAGGATAA-ATTAAACTGATAATGAGACTCGAACAT 1014
Query 1015 AGTCAGAGGCA-TGGTGATATGAAGTGGATCAAAAAGACTAACAATTTCTACTCACATTA 1073
|| |||||||| |||||||| ||||||||||||| | |||||||||||||||||||||||
Sbjct 1015 AGACAGAGGCAATGGTGATACGAAGTGGATCAAAGACACTAACAATTTCTACTCACATTA 1074
Query 1074 TTGTACCTCAATCATTTATCATTAGGCAATGAAAGTGTGATGTTCTGTCCTGTGAAACTT 1133
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 1075 TTGTACCTCAATCATTTATCATTAGACAATGAAAGTGTGATGTTCTGTCCTGTGAAGCTT 1134
Query 1134 GTATTACCAAATTGTAACTAAATGTTTTATCTTCATTCATCCAATCCATAAC 1185
||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1135 GTATTACCACATTGTAACTAAATGTTTTATCTTCATTCATCCAATCCGTAAC 1186
> AT2G24440.1 | Symbols: | selenium binding | chr2:10391089-10392828
FORWARD LENGTH=923
Length=923
Score = 65.8 bits (35), Expect = 9e-10
Identities = 37/38 (97%), Gaps = 0/38 (0%)
Strand=Plus/Minus
Query 1148 TAACTAAATGTTTTATCTTCATTCATCCAATCCATAAC 1185
||||||||||||||||||||||||||||||||| ||||
Sbjct 923 TAACTAAATGTTTTATCTTCATTCATCCAATCCGTAAC 886
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58182431655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5