BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481302 Length=363 Score E Sequences producing significant alignments: (Bits) Value AT2G24285.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 363 9e-100 > AT2G24285.1 | Symbols: | BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT2G24480.1); Has 26 Blast hits to 26 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:10337254-10337707 REVERSE LENGTH=454 Length=454 Score = 363 bits (196), Expect = 9e-100 Identities = 287/328 (88%), Gaps = 17/328 (5%) Strand=Plus/Plus Query 45 GATACTGAAACT-ATCAAACTCGATGTTCATGTAACCGCTTGGTTTCGTACTCCAT--T- 100 ||||||| || | || |||||||||||||||||||||||||||| ||||||||||| | Sbjct 1 GATACTG-AATTAATGAAACTCGATGTTCATGTAACCGCTTGGTCTCGTACTCCATCATC 59 Query 101 GTCAGGGTTCTTAAGCA-GTGTAATAATCAGCCGAGACAGAGAGTTCGAGGAATTTATCA 159 |||||| ||||||| | | ||||| ||||| ||||||||||| |||||||||||||||| Sbjct 60 GTCAGGTTTCTTAAACTCG-GTAATGATCAGTCGAGACAGAGACTTCGAGGAATTTATCA 118 Query 160 TAGACGGGCACG-ATGATAGCGTCACGAGTCTCGGATCTTACCGGGATCCTTCTCGAGGT 218 || ||| || | ||| |||||||||||||||||||||||||| | |||||||||||||| Sbjct 119 TAAACGA-CAGGGATGGTAGCGTCACGAGTCTCGGATCTTACCAGAATCCTTCTCGAGGT 177 Query 219 CCCGACCCACTAATCTTTCTAAACTTCCA-AAACTTCTAACCAAACTACGTCTATCAACT 277 ||||||||||||||||||||| ||||| | ||||||| |||||||||||||||||||||| Sbjct 178 CCCGACCCACTAATCTTTCTAGACTTC-AGAAACTTCGAACCAAACTACGTCTATCAACT 236 Query 278 TCTCCAAAGCCAACTACACGATCATGTCTTGTCCGAACAAATAGCTGGTCAGATTTTAGT 337 ||||| ||||||| | ||||||||||||||||||||||| ||||||| ||||||| || Sbjct 237 TCTCCTAAGCCAATTCCACGATCATGTCTTGTCCGAACATATAGCTGATCAGATT---GT 293 Query 338 CGAAGCCCAACG--ACTAAGAAGTCAAA 363 | ||||| |||| | |||||||||||| Sbjct 294 CCAAGCCAAACGGGA-TAAGAAGTCAAA 320 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17040766911 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5