BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg481302

Length=363
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G24285.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   363    9e-100


> AT2G24285.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: Zinc finger, C3HC4 type (RING finger) family protein 
(TAIR:AT2G24480.1); Has 26 Blast hits to 26 proteins in 2 
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants 
- 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI 
BLink). | chr2:10337254-10337707 REVERSE LENGTH=454
Length=454

 Score =  363 bits (196),  Expect = 9e-100
 Identities = 287/328 (88%), Gaps = 17/328 (5%)
 Strand=Plus/Plus

Query  45   GATACTGAAACT-ATCAAACTCGATGTTCATGTAACCGCTTGGTTTCGTACTCCAT--T-  100
            ||||||| || | || |||||||||||||||||||||||||||| |||||||||||  | 
Sbjct  1    GATACTG-AATTAATGAAACTCGATGTTCATGTAACCGCTTGGTCTCGTACTCCATCATC  59

Query  101  GTCAGGGTTCTTAAGCA-GTGTAATAATCAGCCGAGACAGAGAGTTCGAGGAATTTATCA  159
            |||||| ||||||| |  | ||||| ||||| ||||||||||| ||||||||||||||||
Sbjct  60   GTCAGGTTTCTTAAACTCG-GTAATGATCAGTCGAGACAGAGACTTCGAGGAATTTATCA  118

Query  160  TAGACGGGCACG-ATGATAGCGTCACGAGTCTCGGATCTTACCGGGATCCTTCTCGAGGT  218
            || |||  || | ||| |||||||||||||||||||||||||| | ||||||||||||||
Sbjct  119  TAAACGA-CAGGGATGGTAGCGTCACGAGTCTCGGATCTTACCAGAATCCTTCTCGAGGT  177

Query  219  CCCGACCCACTAATCTTTCTAAACTTCCA-AAACTTCTAACCAAACTACGTCTATCAACT  277
            ||||||||||||||||||||| ||||| | ||||||| ||||||||||||||||||||||
Sbjct  178  CCCGACCCACTAATCTTTCTAGACTTC-AGAAACTTCGAACCAAACTACGTCTATCAACT  236

Query  278  TCTCCAAAGCCAACTACACGATCATGTCTTGTCCGAACAAATAGCTGGTCAGATTTTAGT  337
            ||||| ||||||| | ||||||||||||||||||||||| ||||||| |||||||   ||
Sbjct  237  TCTCCTAAGCCAATTCCACGATCATGTCTTGTCCGAACATATAGCTGATCAGATT---GT  293

Query  338  CGAAGCCCAACG--ACTAAGAAGTCAAA  363
            | ||||| ||||  | ||||||||||||
Sbjct  294  CCAAGCCAAACGGGA-TAAGAAGTCAAA  320



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17040766911


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5