BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481305
Length=1455
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24500.1 | Symbols: FZF | Zinc finger protein 622 | chr2:104... 2030 0.0
AT4G31420.2 | Symbols: | Zinc finger protein 622 | chr4:152458... 246 4e-64
> AT2G24500.1 | Symbols: FZF | Zinc finger protein 622 | chr2:10401035-10402934
REVERSE LENGTH=1541
Length=1541
Score = 2030 bits (1099), Expect = 0.0
Identities = 1313/1410 (93%), Gaps = 40/1410 (3%)
Strand=Plus/Plus
Query 1 AGATTTGGAGATTTGTCGTT-AACAAATTTTGCCGACCTAC----GAGCCGTCGCCTCC- 54
|||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||
Sbjct 1 AGATTTGGAGATTTGTCGTTAAACAAATTTCGCCGACCTACGTATGAGCCGTCGCCTCCA 60
Query 55 -TAT------AAGCCATCCCTAAACCTCGAACTCTTTCTCTCTGAGTTCTTCTTCGTTTT 107
||| ||||||||||||| ||||||| |||| ||||||||| || || | ||
Sbjct 61 ATATAAACCAAAGCCATCCCTAATCCTCGAATTCTTCCTCTCTGAG---TT-TT--TATT 114
Query 108 CTCAGATAGAGAGAGATGTCAGCTTTAGCTTGTAATTCGTGTAACAAAGAGTTCGAAGAC 167
|| ||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 115 CTGAGATAGAGAAAGATGTCAGGTTTAGCTTGTAATTCGTGTAACAAAGACTTCGAAGAC 174
Query 168 GACGCTGAGCAAAAGTTTCACTACAAATCCGAGTGGCACCGTTACAATCTCAAGCGCAAG 227
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 175 GACGCTGAGCAGAAGTTTCACTACAAATCCGAATGGCACCGTTACAATCTCAAGCGCAAG 234
Query 228 ATAGCTGGTGTTCCTGGAGTAACAGAGGCATTATTTGAAGCTAGACAAGCTGCTATAGCT 287
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 235 ATAGCTGGTGTTCCTGGAGTAACAGAGGCACTATTTGAAGCTAGACAAGCTGCTATAGCT 294
Query 288 CAAGAGAAGGTTAAAGCTGTTGAAGCACCAATGCTTTATACTTGTGGAATCTGTAATAAA 347
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||
Sbjct 295 CAAGAGAAGGTTAAAGCTGTTGAAGCACCGATGCTTTATAGTTGTGGAATCTGTAACAAA 354
Query 348 GGTTACAGGAGTTCCAAGGCTCATGAGCAGCAT-TTGAAGTCGAAGAGTCACGTTTTGAA 406
||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 355 GGTTACAGGAGTTCCAAGGCTCATGAGCAGCATCTT-AAGTCGAAGAGTCATGTTTTGAA 413
Query 407 GGCTTCGACGAGTAAC-GGAGAGCAGGATAAAGCGATTATTAAGCAGCTTCCTCCTCGTC 465
||||||||||||| || |||||| ||||||||||||| || ||||||||||| |||||||
Sbjct 414 GGCTTCGACGAGT-ACTGGAGAGGAGGATAAAGCGATCATCAAGCAGCTTCCGCCTCGTC 472
Query 466 GTGTTGAGAAGAATAACCCTGCTCAATTGAAGGGTTCGATTGAGGAAGAGAGTGAAGAGA 525
||||||||||||||||| ||||||||||||||||||||||| | || ||| |||||||
Sbjct 473 GTGTTGAGAAGAATAACACTGCTCAATTGAAGGGTTCGATT---G-AG-GAG-GAAGAGA 526
Query 526 GTGAAGATGAATGGACTGAGGTTGATTCGGATGAGGATTTGGATGCGGATATGAATGAGG 585
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 527 GTGAAGATGAATGGATTGAGGTTGATTCGGATGAGGATTTGGATGCGGAAATGAATGAGG 586
Query 586 ATGCTGAAGAAGAAGAAGATATGGATGAGGATGGTATTGAGTTTGAGTTGGATCCGTG-T 644
||| | |||||||||||||||||||| ||||||||||| ||||||||||||||| | |
Sbjct 587 ATG--G-TGAAGAAGAAGATATGGATGAAGATGGTATTGAATTTGAGTTGGATCCG-GCT 642
Query 645 TGTTGTTTGATGTGTGATAAGAAGCATAAGACGATTGAAAAATGTATGGTTCATATGCAT 704
|||||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 643 TGTTGTTTGATGTGTGATAAGAAGCATAAGACTATAGAGAAATGTATGGTTCATATGCAT 702
Query 705 AAGTTCCATGGGTTTTTCATTCCTGATATCGAGTACTTGAAGGATCCTAAAGGGTTTTTA 764
||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 703 AAGTTTCATGGGTTCTTCATTCCTGATATTGAGTACTTGAAGGATCCTAAAGGGTTTCTG 762
Query 765 ACTTACCTCGGTCTAAAGGTCAAGAGAGACTTTGTGTGTTTGTACTGCAATGAATTGTGC 824
|| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 763 ACCTACCTCGGTCTAAAGGTCAAGAGAGACTTCGTGTGTCTGTACTGCAATGAATTGTGC 822
Query 825 CATCCATTTAGCAGTTTGGAAGCTGTTCGAAAGCATATGGACGCCAAAGGTCATTGCAAA 884
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 823 CATCCATTTAGTAGTTTGGAAGCTGTTCGTAAGCATATGGACGCCAAAGGTCATTGCAAA 882
Query 885 GTGCATTATGGTGATGGTGGTGATGAAGAAGATGCAGAACTTGATGAGTTCTACGACTAC 944
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 883 GTGCATTATGGTGATGGTGGTGATGAAGAAGATGCAGAACTTGAAGAGTTCTATGACTAC 942
Query 945 AGCAGCAGCTATGCCATTGGAGACGATAATCAGATGGTTGTGTCTGGTGAGTCAGTGAAC 1004
||||||||||||| || ||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 943 AGCAGCAGCTATGTCAATGGAGACGAAAATCAGATGGTTGTGTCCGGTGAGTCAGTGAAC 1002
Query 1005 ACTGTAGAGCTTTTTGGTGGGTCTGAGCTTGTGATCACCAAGAGAACCGATAACAAAGTA 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 ACTGTAGAGCTTTTTGGTGGGTCTGAGCTTGTGATCACCAAGAGAACCGATAACAAAGTA 1062
Query 1065 ACGTCTAGGACTCTTGGGTCTCGTGAATTCATGCGCTACTACAAACAGAAGCCACCACCA 1124
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1063 ACGTCTAGGACTCTTGGGTCTCGAGAATTCATGCGCTACTACAAACAGAAGCCAGCACCG 1122
Query 1125 TCTTCTCAGAAGCATATTGTCAACTCTCTAACCTCCAGGTACAAGATGATGGGTCTAGCA 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1123 TCTTCTCAGAAGCATATTGTCAACTCTCTAACCTCCAGGTACAAGATGATGGGTCTAGCA 1182
Query 1185 ACAGTGCAGTCGAAGGAGGACATAGTGAGGATGAAGGTGATGAGAGAGATGAACAAAAGA 1244
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 ACAGTGCAGTCAAAGGAGGCCATAGTGAGGATGAAGGTGATGAGAGAGATGAACAAAAGA 1242
Query 1245 GGAGCGAAAAGCAGTGTTAGGCTCGGAATGAAGAGCAACGTCATCAGAAATCTGCCCAAC 1304
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1243 GGAGCGAAAAGCAGTGTCAGGCTCGGAATGAAGAGCAACGTCATCAGGAATCTGCCCAAC 1302
Query 1305 AACGTCACTTATTAGTCTTGTTCCTCAATTTTCAGGTCTCTCCTCTTTGTTTGATTTTGT 1364
|| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1303 AATGTCACCTATTAGTCTTGCTCCTCGATTTTCAGGTCTCTCCTCTTTGTTTGATTTTGT 1362
Query 1365 GTCAAAAACCAGAGTTTTGGTGAGTGAATC 1394
| | ||||||||||||||||| ||||
Sbjct 1363 G--A----CCAGAGTTTTGGTGAGTAAATC 1386
> AT4G31420.2 | Symbols: | Zinc finger protein 622 | chr4:15245816-15247924
REVERSE LENGTH=1550
Length=1550
Score = 246 bits (133), Expect = 4e-64
Identities = 285/357 (80%), Gaps = 16/357 (4%)
Strand=Plus/Plus
Query 116 GAGAG-AGATGTCAGCTTTAGCTTGTAATTCGTGTAACAAAGAGTTCGAA-GACGACGCT 173
||||| ||||| | | |||| | ||||| ||||||||| |||||| || ||||| |
Sbjct 154 GAGAGAAGATGCCTGGTTTAACATGTAACGCGTGTAACATGGAGTTC-AAGGACGAAGAA 212
Query 174 GAGCAAAAGTTTCACTACAAATCCGAGTGGCACCGTTACAATCTCAAGCGCAAGATAGCT 233
|| | || |||| ||||||||||| |||||||| |||||||||||||||||| | |||
Sbjct 213 GAACGTAACCTTCATTACAAATCCGATTGGCACCGCTACAATCTCAAGCGCAAGGTGGCT 272
Query 234 GGTGTTCCTGGAGTAACAGAGGCATTATTTGAAGCTAGACAAGCTGCTATAGCTCAAGAG 293
|| ||||||||||| ||||| || || ||||| ||||||||| ||||| | ||||| |||
Sbjct 273 GGAGTTCCTGGAGTTACAGAAGCCTTGTTTGAGGCTAGACAATCTGCTCTTGCTCAGGAG 332
Query 294 AAGGTTAAAGCTGTTGAAGCACCAATGCTTTATACTTGTGGAATCTGTAATAAAGGTTAC 353
||| |||| | ||||||||| |||||||||||||||| ||||||| ||||||||||
Sbjct 333 AAGAATAAATCAAATGAAGCACCTATGCTTTATACTTGTGCAATCTGTGCTAAAGGTTAC 392
Query 354 AGGAGTTCCAAGGCTCATGAGCAGCAT-TTGAAGTCGAAG-AGTCACGTTTTGAAGGCTT 411
||||||||||||||||||||||||||| || | |||| | || || |||||| || ||
Sbjct 393 AGGAGTTCCAAGGCTCATGAGCAGCATCTTCA-GTCGC-GTAGCCATGTTTTGCGGGTTT 450
Query 412 C----G--ACG--AGT-AACGGAGAGCAGGATAAAGCGATTATTAAGCAGCTTCCTC 459
| | || | | ||||||||| |||||| ||||||||| | ||| |||||||
Sbjct 451 CACAAGGGACATCAATCAACGGAGAGGAGGATATAGCGATTATCAGGCAACTTCCTC 507
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71736578805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5