BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481308
Length=643
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23535.1 | Symbols: | KOW domain-containing protein | chr5:... 822 0.0
> AT5G23535.1 | Symbols: | KOW domain-containing protein | chr5:7935401-7937372
FORWARD LENGTH=897
Length=897
Score = 822 bits (445), Expect = 0.0
Identities = 574/634 (91%), Gaps = 17/634 (3%)
Strand=Plus/Plus
Query 2 AGCCATGGGTTGGAAAGCTGCTGAGAAACTCATCAGACACTGGAAGATACTTCGAGGGGA 61
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 169 AGCTATGGGCTGGAAAGCTGCTGAGAAACTCATCAGACACTGGAAGATACTTCGAGGAGA 228
Query 62 TAATGTAATGATAATTCGTGGCAAAGATAAGGGTGAGACTGGAACCATAAAGCGCGTCAT 121
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 229 CAATGTAATGATAATTCGTGGGAAAGATAAGGGTGAGACTGGAACCATAAAGCGTGTCAT 288
Query 122 CCGATCCCAAAATCGTGTCATTGTTGAAGGAAAGAATCTGATCAAGAAGCATATAAAGGG 181
|||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 289 TCGATCCCAAAATCGTGTCATCGTTGAAGGGAAGAATCTGATCAAGAAACATATAAAGGG 348
Query 182 AGGCCCTGATCATGAAGGTGGCATTTTCACTGTAGAGGCTCCTCTTCACGCCTCTAATGT 241
|||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 349 AGGCCCTGATCACGAAGGTGGAATTTTCACTGTAGAGGCTCCTCTTCACGCCTCAAATGT 408
Query 242 CCAAGTTGTTGATCCAGTCACTGGGAGGCCTTGTAAGGTTGGTGTCAAGTACCTAGAGGA 301
||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 409 CCAAGTTGTTGATCCTGTCACTGGGAGGCCTTGTAAGGTTGGTGTAAAATACCTAGAAGA 468
Query 302 TGGAACAAAAGTAAGAGTAGCCAGAGGCACTGGCACATCTGGTTCCATCATTCCTCGCCC 361
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 469 TGGAACAAAAGTAAGAGTAGCCAGAGGCACTGGCACATCTGGTTCCATAATTCCCCGACC 528
Query 362 TGAGATTCTAAAGATAAGGGCTACACCAAGACCCACAACTGCTGGCCCCAAGGACACACC 421
|||||||||||||||||||| || || ||||||||||||||||||| |||||||||||
Sbjct 529 AGAGATTCTAAAGATAAGGGCAACGCCGCGACCCACAACTGCTGGCCCTAAGGACACACC 588
Query 422 AATGGAGTATGTCTGGGAGCAGACATATGATGCTAAAACAGGAAAGGGGATGCCTGATCT 481
|||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 589 AATGGAGTTTGTCTGGGAGCAGACATATGATGCTAAAACTGGAAAGGGCATGCCTGATCT 648
Query 482 CTGAGCTGAAGCCTCTTTACAGTTTCGTTCCAAAAATGTTGC--G-----A-------TT 527
|||| |||| ||||| |||||||||||| |||||||||| | | ||
Sbjct 649 TTGAGTTGAAACCTCTCTACAGTTTCGTTTGGAAAATGTTGCCTGCTCTCAAAAAGGATT 708
Query 528 CTTCGTTTTCCCATCCATTATAGTTTGATTTGGGTCAAGAGCTGTGAGGCTTTGTTGAAA 587
|||| ||||||||||||||| |||||||||| |||| |||||||||||| ||||||| |
Sbjct 709 CTTCTTTTTCCCATCCATTAGAGTTTGATTTCGGTCTAGAGCTGTGAGGTTTTGTTGGA- 767
Query 588 GAACCTTTGATCCTGGA-TGAAACGGAGTCGTTT 620
|||||||||||| || | ||||||||||||||||
Sbjct 768 GAACCTTTGATCATG-ACTGAAACGGAGTCGTTT 800
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31044702846
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5