BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481311
Length=973
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24550.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1249 0.0
AT4G31510.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 261 9e-69
> AT2G24550.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G31510.1);
Has 219 Blast hits to 219 proteins in 33 species: Archae -
0; Bacteria - 0; Metazoa - 16; Fungi - 2; Plants - 184; Viruses
- 0; Other Eukaryotes - 17 (source: NCBI BLink). | chr2:10427856-10429222
REVERSE LENGTH=1113
Length=1113
Score = 1249 bits (676), Expect = 0.0
Identities = 860/941 (91%), Gaps = 43/941 (5%)
Strand=Plus/Plus
Query 68 ATATGGAGGTTATGGTTGGATCGTCTTTTGGAATCGGCATGGCGGCGTACGTTAGAGATC 127
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 170 ATATGGAGGTTATGGTTGGTTCGTCGTTTGGAATCGGCATGGCGGCGTACGTTAGAGATC 229
Query 128 -GCGGCGGTGTTTCGGCGCAGGATAAGGCTGTTCAAACGGCTTTGTTCTTGGCGGATGAA 186
| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 230 ATC-GCGGTGTTTCGGCGCAGGATAAGGCTGTTCAAACGGCTCTGTTCTTGGCTGATGAA 288
Query 187 TCGGGACGCGGTGGATCGCAGATCGGGATCGGATTAAGGATGAG---TAATAATAGTAAG 243
|| ||||| |||||||| ||||||||||| |||||||||||||| |||||||| ||||
Sbjct 289 TCAGGACGTGGTGGATCACAGATCGGGATTGGATTAAGGATGAGTAATAATAATAATAAG 348
Query 244 TCGCCGGAGGAATCGTCGGATAGTTCGTCGTCGATCGGAGAGAGCAGTGAAAACGAGGAG 303
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 349 TCGCCGGAGGAATCTTCGGATAGTTCGTCGTCTATCGGAGAAAGCAGTGAAAACGAGGAG 408
Query 304 G-AG--GAAGAAGACGACGCCGTTTCGTGCCAAAGAGGAACACTTGATTCGTTTAGTTCT 360
| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 409 GAAGAAGAAGAAGACGACGCCGTTTCGTGCCAACGAGGAACACTTGATTCGTTTAGTTCT 468
Query 361 TCTCTTGAAGACTCTCTCCCGATTAAGAGAGGATTATCGAACCATTATGTCGGGAAATCG 420
||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct 469 TCTCTTGAAGACTCTCTTCCTATTAAGAGAGGATTATCGAATCATTATGTCGGGAAATCG 528
Query 421 AAATCGTTTGGGAATTTAATGGAAGCTGCGAGTACCGCAAAGGATTTGGAGAAAGTTGAG 480
||||||||||| |||||||||||||| ||||||| || |||||||||||||||||||||
Sbjct 529 AAATCGTTTGGTAATTTAATGGAAGCAGCGAGTAAGGCGAAGGATTTGGAGAAAGTTGAG 588
Query 481 AATCCATTTAACAAGAGAAGGAGATTGGTTATTGCTAATAAGCTAAGGAGAAGAGGAAGA 540
||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||
Sbjct 589 AATCCATTTAACAAGAGGAGGAGATTGGTTATTGCTAATAAGTTAAGGAGGAGAGGAAGA 648
Query 541 TCTATGTCAGCATCGAATTTCTACTCGTGGCAAAACCCTAATTCAATGCCTTTACTTGCA 600
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 649 TCTATGTCAGCTTCGAATTTTTACTCGTGGCAAAACCCTAATTCAATGCCTTTACTTGCA 708
Query 601 CTCCAAGAACCTAatgaagaggatcatca----------gatgat---ga---tg--g-t 641
||||||||||||||||||||||||||||| |||||| || || | |
Sbjct 709 CTCCAAGAACCTAATGAAGAGGATCATCACATTCACAATGATGATTATGAGGATGATGAT 768
Query 642 ggtgatg---ac---cataggaagattatgatgatgatgaAGAATAAAAGAGATTTGATG 695
||||||| | |||||||||||||||||||||||||| ||||||| ||| ||||||
Sbjct 769 GGTGATGGTGATGATCATAGGAAGATTATGATGATGATGAAAAATAAAAAAGAGTTGATG 828
Query 696 GCTCAGACTCGAAGCTGTTTCTGTCTAAGTAGTTTGCAAGAGGAAgatgatggtgatggt 755
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 GCTCAGACTCGAAGTTGTTTCTGTCTAAGTAGTTTGCAAGAGGAAGATGATGGTGATGGT 888
Query 756 gatgatga--a-gatgaatgatCAATCAAGTAACATTGTTTCTTTTAATACTTGTTTTAA 812
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 889 GATGATGATGAAGATGAATGATCAATCAAGTAACATTGTTTCTTTTAATACTTGTTTTTA 948
Query 813 ATTTGTTCTTCTCTTGTGAATTTGttttttttAAGGGAGAGTT-AGAGGAAGTTTCAGTG 871
|||||||||||||||||||||||||||| || ||||||||||| ||||||| ||||||||
Sbjct 949 ATTTGTTCTTCTCTTGTGAATTTGTTTTATTAAAGGGAGAGTTTAGAGGAAATTTCAGTG 1008
Query 872 ATAACAACAAGTGGTGGAAGATTTGATTTGTTAGGAATAATAATTATTAATCTATTCATT 931
||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1009 ATAACAA-A--TGGTGGAAGATTTGATTTGTTAGGAATAATCATTATTAATCTATTCATT 1065
Query 932 AGTAGTAGCAGTCTTAAGACTTTTCCTAATCCCAAAAGACA 972
||||| ||| |||||||||||||||||||||||||||||
Sbjct 1066 AGTAGCAGC---CTTAAGACTTTTCCTAATCCCAAAAGACA 1103
> AT4G31510.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G24550.1);
Has 205 Blast hits to 205 proteins in 31 species: Archae -
0; Bacteria - 0; Metazoa - 5; Fungi - 3; Plants - 187; Viruses
- 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr4:15276180-15277219
REVERSE LENGTH=793
Length=793
Score = 261 bits (141), Expect = 9e-69
Identities = 237/281 (84%), Gaps = 15/281 (5%)
Strand=Plus/Plus
Query 260 CGGATAGTTCGTCGT-CGATCGGAGAGAGCAGTGAAAACGAGGAGGAGGAAGAAGACGAC 318
|||| |||||||||| || | ||||| | ||| ||||||||||| | || |||||||||
Sbjct 122 CGGAGAGTTCGTCGTCCG-TTGGAGAAACCAGCGAAAACGAGGA--A-GATGAAGACGAC 177
Query 319 GCCGTTTCGTGC--CA-AA-GAGGAACACTTGATTCGTTTAGTTCTTCTCTT-GAAGACT 373
|||||||||| | || || || || || ||||||||||||| ||| || ||||| |
Sbjct 178 GCCGTTTCGT-CATCACAAGGAAGATGGCTCAATTCGTTTAGTTCATCT-TTGGAAGATT 235
Query 374 CTCTCCCGATTAAGAGAGGATTATCGAACCATTATGTCGGGAAATCGAAATCGTTTGGGA 433
|||| |||||||||||||||||||| |||||||| | ||||||||||||||||||||||
Sbjct 236 CTCTTCCGATTAAGAGAGGATTATCAAACCATTACATAGGGAAATCGAAATCGTTTGGGA 295
Query 434 ATTTAATGGAAGCTGCGAGTACCGCAAAGGATTTGGAGAAAGTTGAGAATCCATTTAACA 493
||||||||||||| | |||| | |||| ||||||| |||||| |||| |||||| ||||
Sbjct 296 ATTTAATGGAAGC-G--AGTAACACAAACGATTTGGTGAAAGTGGAGAGTCCATTGAACA 352
Query 494 AGAGAAGGAGATTGGTTATTGCTAATAAGCTAAGGAGAAGA 534
||||||| |||||| ||||||||||||||||||| ||||||
Sbjct 353 AGAGAAGAAGATTGCTTATTGCTAATAAGCTAAGAAGAAGA 393
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47621971356
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5