BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481314
Length=1331
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24580.1 | Symbols: | FAD-dependent oxidoreductase family p... 1969 0.0
> AT2G24580.1 | Symbols: | FAD-dependent oxidoreductase family
protein | chr2:10444790-10446242 REVERSE LENGTH=1453
Length=1453
Score = 1969 bits (1066), Expect = 0.0
Identities = 1250/1339 (93%), Gaps = 12/1339 (1%)
Strand=Plus/Plus
Query 1 AAAGAGCAGCAACAACAACCACACGCTTCTCTAACAT-AAACCAAGCCTCTCTTTCACTT 59
|||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1 AAAGAGCATCAACAACAACCACACGCTTCTCAAACATCAAACCAAGCCTCTCTTTCACTT 60
Query 60 CCTCATGGAATATTCCGGCGATGGCAGATTCGACGTGATTGTCGTCGGAGCAGGCGTTAT 119
||||||||||||||||| ||| ||||||||||||||||||||||| |||||||| |||||
Sbjct 61 CCTCATGGAATATTCCGACGACGGCAGATTCGACGTGATTGTCGTTGGAGCAGGAGTTAT 120
Query 120 GGGAAGCTCCGCCGCGTACCAGCTGGCGAAAAGAGGCCAGAAGACTCTCCTCTTAGAGCA 179
|||||||||||||||||| |||||||| |||||||||||||||||||| | ||||||||
Sbjct 121 GGGAAGCTCCGCCGCGTATCAGCTGGCAAAAAGAGGCCAGAAGACTCTTTTGTTAGAGCA 180
Query 180 ATTCGATTTCCTCCACCACCGTGGCTCTTCTCACGGTGAGTCACGCACCATCCGTGCCAC 239
||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 181 ATTCGATTTCCTCCATCACCGTGGCTCTTCTCACGGCGAGTCACGCACCATACGTGCCAC 240
Query 240 TTACCCGGAGGATTACTACTACGCCATGGTTTCCGAGTCGACTAGGTTATGGGCTGAC-G 298
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||| | |
Sbjct 241 TTACCCGGAGGATTACTACTACTCCATGGTTTCCGAGTCGACTCGGTTATGGGCTG-CGG 299
Query 299 CTCAGTCCGAGATCGGATACAAAGTCCATTTCCCAACTCAACAATTCGATATGGGTCCAG 358
||||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||| |
Sbjct 300 CTCAGTCCGAGATTGGATACAAAGTTCATTTTCCAACTCAACAATTCGACATGGGTCCGG 359
Query 359 CTGATCAGCAGAGTCTCCTCTCTGTTGTTGCCACTTGTCAAAAACACGCGCTAGCTCATC 418
| |||||||||||||||||||| ||||| ||||| ||||||||||||| |||||||||||
Sbjct 360 CAGATCAGCAGAGTCTCCTCTCCGTTGTGGCCACGTGTCAAAAACACGGGCTAGCTCATC 419
Query 419 GGGTTATGGACTCTCATGCTGTTTCCGAGCATTTCTCCGGGAGGATTAGTATCCCGGAGA 478
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GGGTTATGGATTCTCATGCAGTTTCCGAGCATTTCTCCGGGAGGATTAGTATCCCGGAGA 479
Query 479 ATTGGATCGGAGTCTCGACGGAACTTGGTGGGGTTATTAAACCCACCAAGGCCGTCTCCA 538
||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 480 ATTGGATCGGAGTTTCGACGGAACTTGGTGGGATTATCAAACCCACCAAGGCCGTCTCCA 539
Query 539 TGTTTCAGACGCTTGCGTTTGGACATGGCGCTGTCTTAAGAGACAACACCAAAGTTGCAA 598
||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||
Sbjct 540 TGTTTCAGACGCTTGCGATTGGACATGGTGCCATCTTAAGAGACAACACCAAAGTTGCAA 599
Query 599 ACATAAAGAGAGACGGTGAAAACGGGGAAGGGGTAATAGTTTGCACTGTGAAAGGAGATA 658
||||||||||||| ||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 600 ACATAAAGAGAGATGGTGAAAGTGGGGAAGGGGTAATAGTCTGCACGGTGAAAGGAGATA 659
Query 659 AGTTCTACGGTAAAAAATGCATTGTAACCGCGGGTGCATGGATAAGTAAGCTGGTGAAAA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGTTCTACGGTAAAAAATGCATTGTAACCGCGGGTGCATGGATAAGTAAGCTGGTGAAAA 719
Query 719 CGGTGGCCGGGATAAATTTTCCGGTGGAGCCGCTTGAGACGACTGTTTATTATTGGAGAA 778
|||||||||||||| |||||||||||||||| |||||||| || || | |||||||||||
Sbjct 720 CGGTGGCCGGGATAGATTTTCCGGTGGAGCCCCTTGAGACTACGGTGTGTTATTGGAGAA 779
Query 779 TCAAAGAAGGCCACGAGGAGAAATTCACGATCGACGGAGAGTTTCCAACTTTTGCGTCAT 838
||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||
Sbjct 780 TCAAAGAAGGCCACGAGGAGAAATTCACGATAGACGGAGAGTTTCCGACTTTCGCGTCAT 839
Query 839 ACGGAGTTCCGTACGTGTACGGAACTCCGTCATTAGAGTATCCGGGACTGATCAAAGTGG 898
|||||| |||||| ||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 840 ACGGAGCTCCGTATGTGTACGGAACTCCGTCTTTGGAGTATCCGGGACTGATCAAAGTGG 899
Query 899 CGGTTCACGGTGGTTATTGGTGTGATCCGGATAAGAGGCCATGGGGACCAGGAGTGAAGC 958
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 900 CGGTTCACGGTGGTTATTGGTGCGATCCGGATAAGAGGCCATGGGGGCCAGGAGTGAAGT 959
Query 959 TAGAGGAGCTTAAAGAGTGGATAAAGGAGAGATTTGGAGGGATGGTTGATTCGGAAGGAC 1018
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 960 TAGAGGAGCTTAAAGAGTGGATAAAGGAGAGATTTGGAGGGATGGTTGATTCCGAAGGAC 1019
Query 1019 CGGTGGCGACTCAGCTTTGTATGTATTCAATGACCCCGGACGAGGATTTCGTTATTGATT 1078
| |||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct 1020 CCGTGGCGACTCAGCTTTGTATGTATTCGATGACACCGGACGAGGATTTCGTGATTGATT 1079
Query 1079 TTCTTGGAGGGGAGTTAGGGAGAGATGTTGTTGTGGGTGGAGGGTTTTCCGGTCATGGGT 1138
|||||||||||||||| ||||||||||| || || || || ||||||||||||||||| |
Sbjct 1080 TTCTTGGAGGGGAGTTTGGGAGAGATGTGGTGGTAGGCGGCGGGTTTTCCGGTCATGGTT 1139
Query 1139 TTAAGATGGCGCCGGCAGTGGGGAGGATATTGGCGGATATGGCGATGGAAGGAG-AGGCC 1197
|||||||||||||||| |||||||||||| ||||||||||||||||||| || | |||||
Sbjct 1140 TTAAGATGGCGCCGGCGGTGGGGAGGATACTGGCGGATATGGCGATGGA-GGTGGAGGCC 1198
Query 1198 AGAGG---AGGAGTGGAGATGAAACAGTTTAGTCTCCGACGGTTTGAAGAGAATCCTAAA 1254
|||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1199 GGAGGTGGAGGAGTTGAGATGAAACAGTTTAGTCTCCGACGGTTTGAAGATAATCCTAAA 1258
Query 1255 GGGAATGTAAAGGAGTATCCTGACCAAGTGATACTTGAT-TGCCCGTTGAAACATTAAA- 1312
|| |||| ||||||||||||||||||||||||||||||| | ||| |||||||||||||
Sbjct 1259 GGAAATGCAAAGGAGTATCCTGACCAAGTGATACTTGATGT-CCCATTGAAACATTAAAC 1317
Query 1313 TTTGGTTACAAAATGTCAA 1331
|||| ||||||||||||||
Sbjct 1318 TTTG-TTACAAAATGTCAA 1335
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65511711225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5