BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481315
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24590.1 | Symbols: RSZ22a, At-RSZ22a | RNA recognition moti... 1391 0.0
> AT2G24590.1 | Symbols: RSZ22a, At-RSZ22a | RNA recognition motif
and CCHC-type zinc finger domains containing protein | chr2:10449631-10451184
FORWARD LENGTH=999
Length=999
Score = 1391 bits (753), Expect = 0.0
Identities = 871/926 (94%), Gaps = 15/926 (2%)
Strand=Plus/Plus
Query 3 ATGTCGCGTGTGTATGTTGGTAATTTGGATCCGCGAGTTACTGAGCGTGAACTCGAGGAT 62
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 85 ATGTCGCGTGTGTATGTTGGTAATTTGGATCCGCGAGTTACTGAACGTGAACTCGAGGAT 144
Query 63 GAGTTTCGTGT-CTATGGTGTGATCAGGAGTGTTTGGGTTGCTAGAAGACCACCTGGTTA 121
||||||||| | || |||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 145 GAGTTTCGT-TCCTTTGGTGTGATCAGGAGTGTCTGGGTTGCTAGAAGACCTCCTGGTTA 203
Query 122 CGCCTTTCTTGATTTTGAAGATTCAAGAGATGCCCGAGACGCTATCCGTGAATTAGATGG 181
||| |||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||
Sbjct 204 CGCTTTTCTTGATTTTGAAGATTCAAGAGATGCCCGTGACGCCATCCGTGAAGTAGATGG 263
Query 182 CAAGAATGGATGGAGGGTAGAGCAGTCTCATAACcgtggtggcggtggaggtcgtggagg 241
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 264 CAAGAATGGATGGAGGGTAGAGCAGTCTCATAACCGTGGTGGTGGTGGAGGTCGT----- 318
Query 242 cggcggtgggggccgtggaggaggtgatggtggtcgtggtcgtggtggtTCTGATTTGAA 301
||||| || |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 319 ----GGTGGTGGTCGTGGAGGAGGTGATGGTGGTCGTGGACGTGGTGGTTCTGATTTGAA 374
Query 302 GTGCTATGAGTGTGGTGAGTCTGGTCACTTTGCACGTGAATGCCGCTCTCGTGGTGGTTC 361
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 375 GTGCTATGAGTGTGGTGAGTCTGGTCACTTTGCACGTGAATGTCGTTCTCGTGGTGGTTC 434
Query 362 --G-GGTAGGCGTCGTAGCCGCAGCCGTAGTCGTAGTCCTCCTAGATACAGAAAGAGCCC 418
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 435 TGGTGGTAGGCGTCGTAGCCGCAGCCGTAGTCGCAGTCCTCCTAGATACAGAAAGAGTCC 494
Query 419 TACCTATGGAGGACGGAGGAGTTACAGCCCTCGTGCTAGATCTCCTCCTCCTCCAAGGCG 478
||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 495 TACCTATGGAGGACGAAGAAGTTACAGCCCTCGTGCTAGATCTCCTCCTCCTCCAAGACG 554
Query 479 TCGTAGTCCTTCTCCTCGTGGTCGTAACTACAGTAGGTCACCACCACCTTATAGAGCACG 538
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 555 TCGTAGTCCTTCTCCTCGTGGTCGCAACTACAGTAGGTCACCACCACCTTATAGAGCACG 614
Query 539 TGACGAGGTGCCATATGCTAATGGAAATGGTCTGAAAGATGTGCGCAGAAGCCGGAGCTG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 TGACGAGGTGCCATATGCTAATGGAAATGGTCTGAAAGATGTGCGCAGAAGCCGGAGCTG 674
Query 599 AGTGTTTCTTGCCTAGATAGCAAGTTATTGGATCAGGAGACTACTGTTTGCTTGTGATGT 658
|||||| |||| ||||||||||| |||| |||||||||||| ||| ||||||||||| ||
Sbjct 675 AGTGTTACTTGTCTAGATAGCAAATTATGGGATCAGGAGACAACTATTTGCTTGTGACGT 734
Query 659 CAAGAGGACAGGGAAATTAGTATCTGTGAATTTCACTAAGAGAACATGTTTTAGCTGTGT 718
|||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 735 CAAGAGGAGAGG-AAATTAGTATCTGTGAATTTCACTAAGAGAATATGTTTTAGCTGTGT 793
Query 719 GGTGGATTGGATATGCTTGCTACTTTTGAATTCCTGGGATGCTTCTTATTGCGTTTGGAT 778
|||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||
Sbjct 794 GGTGGATTGGATATGCTTGCTACTTTTGAATTGCTGGAAAGCTTCTTATTGCGTTTGGAT 853
Query 779 TATGAAGCCGTAGTTGTCTCTGCCGTTAGGTAAAGTACTTTTAAATATCTACCCAAGTTC 838
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 854 TATGAAGCCATAGTTGTATCTGCCGTTAGGTAAAGTACTTTTAAATATCTACCCATGTTC 913
Query 839 TTAAAAGACATAAACAAAAACTCTTCTAAAAACCTATGCATTTTCCTTGTTTTTTGTTCT 898
||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||
Sbjct 914 TTAAAAGACATAAACAAAAGCTCTGCTAAAAACCTATGCATTTTCTTTGTTTTTTGTTCT 973
Query 899 ATCGTCTCGAGGTTTCTTCGGGTTTC 924
||| ||||||||||||||| ||||||
Sbjct 974 ATCATCTCGAGGTTTCTTCAGGTTTC 999
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45160498153
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5