BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481319
Length=2342
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24610.1 | Symbols: ATCNGC14, CNGC14 | cyclic nucleotide-gat... 3725 0.0
AT4G30360.1 | Symbols: ATCNGC17, CNGC17 | cyclic nucleotide-gat... 407 3e-112
> AT2G24610.1 | Symbols: ATCNGC14, CNGC14 | cyclic nucleotide-gated
channel 14 | chr2:10457045-10460508 FORWARD LENGTH=2398
Length=2398
Score = 3725 bits (2017), Expect = 0.0
Identities = 2187/2269 (96%), Gaps = 11/2269 (0%)
Strand=Plus/Plus
Query 1 GCCTAGACAAGAAGAACAATCT-GTCTAGTTTTAGCTTTAAG-CTTTGTTGCTACAAACA 58
||||| |||||||||||||||| ||| |||||||||| ||| ||| ||||||||||||
Sbjct 1 GCCTAAACAAGAAGAACAATCTATTCTTGTTTTAGCTTAAAGTTTTTATTGCTACAAACA 60
Query 59 ATGGAGTTCAAGAGAGACAATACTGTCAGATTCTATGGAGACGAGAAACAAACCATAGAA 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATGGAGTTCAAGAGAGACAATACTGTCAGATTCTATGGAGACGAGAAACAAACCATAGAA 120
Query 119 GTAGGAGAGAAGCGTGTACCATTGTTCAAATCAACAACGGCTCCATTTATGAAACAAGAA 178
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTAGGAGAGAAGCGAGTACCATTGTTCAAATCAACAACGGCTCCATTTATGAAACAAGAA 180
Query 179 G---TCCCAAAGAAGAGCAAAACACGTTTGAAAATCCCAAGATTTGGTAGATTCAAAGTG 235
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTACTCCCAAAGAAGAGCAAAACACGTTTGAAAATCCCAAGATTTGGTAGATTCAAAGTG 240
Query 236 TTTCCAGAGAATTTCGAGATCGAAAGAGATAAGATTCTAGATCCTGGTGGTGATGCAGTG 295
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 TTTCCAGAGAATTTCGAGATCGAAAGAGACAAGATTCTAGATCCTGGTGGTGATGCAGTG 300
Query 296 CTTCAATGGAACAGAGTTTTTCTCTTCTGGTGTCTCGTTGCACTTTACGTCGACCCTTTG 355
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTTCAATGGAACAGAGTTTTCCTCTTCTGGTGTCTCGTTGCACTTTACGTCGACCCTTTG 360
Query 356 TTCTTCTTTCTTTCTTCAGTCAAACGCATTGGACGATCTTCTTGTATGACTACAGATTTG 415
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 TTCTTCTTTCTTTCTTCAGTCAAACGTATTGGACGATCTTCTTGTATGACTACAGATTTG 420
Query 416 AAGCTTGGAATTGTCATTACTTTCTTCAGAACATTAGCAGATTTGTTCTATGTTTTGCAC 475
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAGCTTGGAATTGTTATCACTTTCTTCAGAACATTAGCAGATTTGTTCTATGTTTTGCAC 480
Query 476 ATTGTGATCAAATTCAGAACAGCTTATGTTTCTCGTACTTCTAGAGTGTTTGGTCGTGGA 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATTGTGATCAAATTCAGAACAGCTTATGTTTCTCGTACTTCTAGAGTGTTTGGTCGTGGA 540
Query 536 GAACTTGTGAAAGATCCTAAGTTGATTGCTAGAAGATACTTAAGATCAGATTTCATCGTT 595
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 541 GAACTTGTGAAAGATCCTAAGTTGATTGCTAGAAGATACTTGAGATCAGATTTCATCGTT 600
Query 596 GATCTCATCGCTTGTTTGCCTCTTCCTCAGATTGTTAGTTGGTTTATCTTGCCATCAATC 655
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GACCTCATCGCTTGTTTGCCTCTTCCTCAGATTGTTAGTTGGTTTATCTTGCCATCAATC 660
Query 656 AGAAGCTCTCACTCAGATCATACCACAAATGCTCTTGTGCTCATTGTTCTTGTTCAATAC 715
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 661 AGAAGCTCTCACTCAGATCATACCACAAATGCTCTTGTGCTCATCGTTCTTGTTCAATAC 720
Query 716 ATTCCTCGCCTTTATCTGATTTTCCCTCTTAGCGCTGAGATTATTAAAGCAACCGGAGTT 775
||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 721 ATTCCTCGCCTTTATTTGATTTTTCCTCTAAGCGCTGAGATTATTAAAGCAACCGGAGTT 780
Query 776 GTTACAACCACCGCTTGGGCCGGTGCTGCTTACAATCTCCTCCAGTATATGCTTGCTAGC 835
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GTTACAACAACCGCTTGGGCCGGTGCTGCTTACAATCTCCTCCAGTATATGCTTGCTAGC 840
Query 836 CATATTCTAGGTTCTGCGTGGTATCTATTGTCGATAGAACGCCAAGCGACGTGTTGGAAA 895
|||||||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CATATTCTTGGCTCGGCGTGGTATCTATTGTCGATAGAACGCCAAGCGACGTGTTGGAAA 900
Query 896 GCAGAATGTCATAAAGAATTAGCGTCTCCACAATGTGTTACGGACTTCTTTGACTGTGGT 955
||||||||||| ||||||| || | | | ||||||||||||||| |||||||||||||||
Sbjct 901 GCAGAATGTCACAAAGAATCAGTGCCGCTACAATGTGTTACGGATTTCTTTGACTGTGGT 960
Query 956 ACATTGCACCGTGACGATCGGAACA-TCTGGCAGAATACAACCGTTGTCTTCAGCAATTG 1014
|||||||||||||| |||||||||| | ||||||||||||||||||||||||||||| ||
Sbjct 961 ACATTGCACCGTGATGATCGGAACAAT-TGGCAGAATACAACCGTTGTCTTCAGCAACTG 1019
Query 1015 CGATCCTTCGAATAATATCCAATTCACATTCGGGATTTTCGCGGATGCTCTCACCAAAAA 1074
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TGATCCTTCTAATAATATCCAATTCACATTCGGGATTTTCGCGGATGCTCTCACCAAAAA 1079
Query 1075 CGTGGTTTCCTCGCCTTTCTTGGAGAAATACTTGTATTGTTTGTGGTTTGGACTGCAGAA 1134
||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1080 CGTAGTTTCTTCGCCTTTCTTGGAGAAATACTTGTATTGTTTATGGTTTGGACTGCAGAA 1139
Query 1135 TCTAAGTTCTTATGGACAGAATCTGAGCACAAGTACCTCTGTTCTTGAGACAATGTTTGC 1194
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TCTAAGTTCTTATGGACAGAACCTGAGCACAAGTACCTCTGTTCTTGAGACAATGTTTGC 1199
Query 1195 TATCCTTGTGGCTATCTTTGGTCTAGTTTTGTTTGCTCTTTTAATCGGAAACATGCAGAC 1254
||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1200 TATCCTTGTCGCTATCTTTGGTCTGGTTTTGTTTGCTCTTTTGATCGGAAACATGCAGAC 1259
Query 1255 GTATTTGCAATCGATCACGGTGAGACTTGAGGAGTGGAGACTTAAGAGAAGAGACACAGA 1314
|||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 1260 GTATTTGCAATCGATCACGGTGAGGCTTGAGGAATGGAGACTGAAGAGAAGAGACACAGA 1319
Query 1315 AGAATGGATGGGACATCGACTACTGCCACAGAATCTTAGAGAACGAGTGAGGCGTTTCGT 1374
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 1320 AGAATGGATGGGACATCGGTTACTGCCGCAGAATCTTAGAGAACGAGTGAGGCGTTTCGT 1379
Query 1375 GCAGTATAAATGGCTGGCGACTCGAGGTGTTGACGAAGAAACCATTCTTCATTCATTACC 1434
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1380 GCAGTATAAATGGCTGGCGACTCGCGGTGTTGACGAGGAAACCATTCTTCATTCATTACC 1439
Query 1435 CGCAGATCTCCGTAGAGACATCCAACGCCATCTCTGTCTCGATCTTGTTCGTCGTGTACC 1494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 CGCAGATCTCCGTAGAGACATCCAACGCCATCTCTGTCTCGATCTTGTTCGTCGTGTACC 1499
Query 1495 GCTATTTGCACAAATGGATGATCAGTTACTAGATGCAATATGTGAACGGTTAGCATCATC 1554
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1500 GCTATTTGCACAAATGGATGATCAGTTACTAGATGCAATATGTGAACGGTTAGCGTCATC 1559
Query 1555 TCTAAGCACACAAGGGAACTACATTGTACGTGAAGGTGATCCAGTGACGGAAATGCTCTT 1614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 TCTAAGCACACAAGGGAACTACATTGTACGTGAAGGTGATCCAGTGACGGAAATGCTCTT 1619
Query 1615 CATTATCCGTGGAAAACTCGAAAGCTCGACGACTAATGGAGGCAGAACCGGTTTCTTCAA 1674
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 CATCATCCGTGGAAAACTGGAAAGCTCGACGACTAATGGAGGCAGAACCGGTTTCTTCAA 1679
Query 1675 CTCAATCACACTCAGACCAGGAGATTTCTGTGGAGAAGAGCTTCTTGCATGGGCATTGCT 1734
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 CTCAATCACACTGAGACCAGGAGATTTCTGTGGAGAAGAGCTTCTTGCATGGGCATTGCT 1739
Query 1735 TCCAAAATCAACAGTAAACTTACCATCCTCAACAAGAACGGTGCGAGCCTTAGAAGAAGT 1794
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1740 ACCAAAATCAACAGTAAACTTACCATCCTCAACAAGAACGGTGCGAGCCTTGGAAGAAGT 1799
Query 1795 TGAAGCCTTTGCTTTACAAGCAGGTGATCTCAAATTTGTGGCTAACCAATTCAGGCGTCT 1854
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1800 TGAAGCCTTTGCTTTACAAGCAGGTGATCTCAAATTCGTGGCTAACCAATTCAGGCGTTT 1859
Query 1855 ACATAGCAAGAAGCTGCAACACACATTCCGTTATTACTCTCATCAGTGGAGAACTTGGGC 1914
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1860 ACATAGCAAGAAGCTGCAACATACATTCCGTTATTACTCCCATCAGTGGAGAACTTGGGC 1919
Query 1915 TGCTTGTTTTGTACAAGTCGCGTGGAGACGGTATAAGAGAAAGAAGTTGGCTAAGAGTCT 1974
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1920 TGCTTGTTTTGTACAAGTCGCTTGGAGACGGTATAAGAGAAAGAAGTTGGCTAAGAGTCT 1979
Query 1975 TAGCTTGGCTGAGTCATTCTCATCGTATGATGAAGAAGAAGCTGTGGCGGTTGCTGCAAC 2034
||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 1980 TAGCTTGGCTGAGTCATTCTCTTCTTATGATGAAGAAGAAGCTGTTGCGGTTGCTGCAAC 2039
Query 2035 TGAGGAGATGAGTCAAGAAGGAGGAGCACAAAGCGGCGCTAAAGCTCGCCATCATACTTC 2094
||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2040 CGAGGAAATGAGTCATGAAGGAGAAGCACAAAGCGGCGCTAAAGCTCGCCATCATACTTC 2099
Query 2095 TAATGTGAAACCGCATTTTGCTGCAACAATACTTGCTTCGAGGTTTGCTAAGAACACAAG 2154
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 2100 TAATGTGAAACCGCATTTCGCTGCAACCATACTTGCTTCGAGGTTTGCTAAGAACACAAG 2159
Query 2155 GAGGACAGCTCATAAGCTCAAGGATGTCGAAATACCGATGCTGCCTAAACCGGATGAGCC 2214
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2160 AAGGACGGCTCATAAGCTCAAGGATGTCGAAATACCGATGCTGCCTAAACCGGATGAGCC 2219
Query 2215 GGATTTCTCAGTGGATGATTGATTGATTTGATTAACCGTTTTGATATAA 2263
|||||||||||||||||||||||| | ||||||||||||| ||||||
Sbjct 2220 GGATTTCTCAGTGGATGATTGATT--T--GATTAACCGTTTTAATATAA 2264
Score = 102 bits (55), Expect = 1e-20
Identities = 77/86 (90%), Gaps = 7/86 (8%)
Strand=Plus/Plus
Query 2263 AAAAATCAGTTTGTTAAAATTCaaaaaaaaCTTTGCTGCTTGAAGTA--A-T--TC-ACA 2316
||||||||||||||||||| ||||||||| ||| ||||||||||||| | | || |||
Sbjct 2294 AAAAATCAGTTTGTTAAAACTCAAAAAAA-CTTGGCTGCTTGAAGTAGTAGTAATCCACA 2352
Query 2317 AAAATGTTCAGCAGTTTGTATAAATA 2342
||||||||||||||||||||||||||
Sbjct 2353 AAAATGTTCAGCAGTTTGTATAAATA 2378
> AT4G30360.1 | Symbols: ATCNGC17, CNGC17 | cyclic nucleotide-gated
channel 17 | chr4:14854811-14858003 REVERSE LENGTH=2636
Length=2636
Score = 407 bits (220), Expect = 3e-112
Identities = 703/933 (75%), Gaps = 46/933 (5%)
Strand=Plus/Plus
Query 1046 GGGAT-TTTCGCGG-ATGCTCTCACCAAAAACGTGGTTTCCTCGCCTTTCTTGGAGAAAT 1103
||||| ||| | || |||| |||| |||||||| || || || | ||||| |||| ||
Sbjct 1215 GGGATCTTT-G-GGAATGCAATCACGAAAAACGTTGTGTCTTCACAGTTCTTCGAGAGAT 1272
Query 1104 ACTTGTATTGTTTGTGGTTTGGACTGCAGAATCTAAGTTCTTATGGACAGAATCTGAGCA 1163
| || || |||||||||| ||| ||||| | || |||||||||||||||||| || |
Sbjct 1273 ATTTCTACTGTTTGTGGTGGGGATTGCAGCAGCTTAGTTCTTATGGACAGAATTTG-TC- 1330
Query 1164 CAAGTACCTCTGTTC-T---TGAGACAATGTTTGCTATCCTTGTGGCTATCTTTGGTCTA 1219
|| | ||| ||||| | || || | |||||| | || | || |||||||||||
Sbjct 1331 CACG-ACC-ATGTTCATGGGCGAAACCACATTTGCTGTTCTCATTGCAATCTTTGGTCTT 1388
Query 1220 GTTTTGTTTGCTCTTTTAATCGGAAACATGCAGACGTATTTGCAATCGATCACGGTGA-G 1278
|| | ||||| | | | || || || |||||||| ||| ||||||| | || || | |
Sbjct 1389 GTCCTCTTTGCCCATCTCATTGGGAATATGCAGACATATCTGCAATCTTTGACTGT-ACG 1447
Query 1279 ACTTGAGGAGTGGAGACTT-AAG-AGAAGAGACACAGAAGAATGGATGGGACATCGACTA 1336
|||||||| |||||| || ||| || |||||||| || || |||||| ||||||| | |
Sbjct 1448 GCTTGAGGAATGGAGA-TTGAAGAAG-AGAGACACTGAGGAGTGGATGAGACATCGTCAA 1505
Query 1337 CTGCC--ACAGAATCTTAGAGAA-CGAGTGAGGCG-TTTCGTGCAGTATAAATGGCTGGC 1392
|| || | ||| | | ||| || || |||||||| | | | ||||||||| ||||| ||
Sbjct 1506 CTTCCTGA-AGAGT-TGAGA-AACCGTGTGAGGCGATAT-GAGCAGTATAAGTGGCTTGC 1561
Query 1393 GACTCGAGGTGTTGACGAAGA-AACCATTCTTCATTCATTACCCGCAGATCTCCGTAGAG 1451
|| |||| || || ||||| | | || || |||||| | ||||| || | |
Sbjct 1562 AACAAGAGGAGTCGATGAAGAGGTTC-TCCTGCAAAGTTTACCCACTGATCTTCGCCGTG 1620
Query 1452 ACATCCAACGCCATCTCTGTCTCGATCTTGTTCGTCGTGTACCGC-TATTT-GCACAAAT 1509
| || ||||| || || ||| | ||||||||||| | || || | | ||| | |||||
Sbjct 1621 ATATTCAACGTCACCTATGTTTAGATCTTGTTCGAAGAGT-CC-CATTTTTCTCTCAAAT 1678
Query 1510 GGATGATCAGTTACTAGATGCAATATGTGAACGGTTAGCATCATCTCTAAGCACACAAGG 1569
|||||||||| | || ||||| |||||||| || | | || ||||| | || ||||
Sbjct 1679 GGATGATCAGCTGCTTGATGCGATATGTGAGCGCCTGGTTTCTTCTCTGTGTACTGAAGG 1738
Query 1570 GAAC-TACATTGTACGTGAAGGTGATCCAG-TGACGGAAATGCTCTTCATTATCCGTGGA 1627
| || ||| |||||||||||||||| | | | | || ||||||||||| ||| | ||
Sbjct 1739 G-ACTTACCTTGTACGTGAAGGTGA-CTTGATCTCAGAGATGCTCTTCATCATCAGAGGT 1796
Query 1628 AAACTCGAAAGCTCGACGACTAATGGAGGCAGAACCGGTTTCTTCAACTCAATCACACTC 1687
| |||||| || || || || ||||||||||||||||||||||||||||| || | |||
Sbjct 1797 AGACTCGAGAGTTCCACAACCAATGGAGGCAGAACCGGTTTCTTCAACTCGATTATACTT 1856
Query 1688 AGACCAGGAGATTTCTGTGGAGAAGAGCTTCTTGCATGGGCATTGCTTCCAAAATCAACA 1747
||||| |||||||||||||| |||||||||||| | ||||| |||||||||||||||||
Sbjct 1857 AGACCTGGAGATTTCTGTGGGGAAGAGCTTCTTTCTTGGGCTTTGCTTCCAAAATCAACC 1916
Query 1748 GTAAACTTACCATCCTCAACAAGAACGGTGCGAGCCTTAGAAGAAGTTGAAGCCTTTGCT 1807
| || |||||||| || |||||||| || | || |||| ||||| ||||| || |||
Sbjct 1917 TTGAATTTACCATCTTCTACAAGAACAGTTAGGGCTTTAGTTGAAGTCGAAGCATTCGCT 1976
Query 1808 -TTACAAGCAGGTGATCTCAAATTTGTGGCTAACCAATTCAGGCG-TCTACATAGCAAGA 1865
|| | ||| | ||| | |||||||| || || || || ||||| | |||| |||||||
Sbjct 1977 CTT-CGAGCTGAAGATTTGAAATTTGTTGCAAATCAGTTTAGGCGGT-TACACAGCAAGA 2034
Query 1866 AGCTGCAACACACATTCCG-TTATTACTCTCATCAGTGGAGAACTTGGGCTGCTTGTTTT 1924
|||| ||||| |||||| | || | ||||||| || |||||||||||||||||||| ||
Sbjct 2035 AGCTTCAACATACATTCAGATTCT-ACTCTCACCATTGGAGAACTTGGGCTGCTTGCTTC 2093
Query 1925 GTACAAGTCG-CGTGGAG-ACGGTATAAGAGAA 1955
|||||| || | ||| | | |||| |||||||
Sbjct 2094 ATACAAG-CGGCTTGGCGCA-GGTACAAGAGAA 2124
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116264462220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5