BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg481321

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G24620.1 | Symbols:  | S-locus glycoprotein family protein |...   664    0.0  


> AT2G24620.1 | Symbols:  | S-locus glycoprotein family protein 
| chr2:10463076-10463549 REVERSE LENGTH=474
Length=474

 Score =  664 bits (359),  Expect = 0.0
 Identities = 431/465 (93%), Gaps = 7/465 (2%)
 Strand=Plus/Plus

Query  1    ATGAAATTTGGCTGGGATGCCAAATCAAACATCAATAGAGTTTTGAAATCTTGGAGAAGC  60
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct  1    ATGAAATTTGGCTGGGATGCCAAATCAAACATAAATAGAGTTTTGAAATCTTGGAGAAG-  59

Query  61   CTTAG-TGATCCTTCTCCCGGGGAATACACATACGGAGTTGAACGTCATGAGCTCGCGCA  119
            ||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  60   CTTTGATGATCCTTCTCCCGGGGAATACACATACGGAGTGGAACGTCATGAGCTCGCGCA  119

Query  120  AAGTTTCATTCGGAAGAAAGGTGTGCCAACATTCCGGAGTGACCCATGGAAGACAAAAAA  179
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  120  AAGTTTCATTCGGAAGAAAGGTGTGTCAACATTCCGGAGTGACCCATGGAAGACAAAAAA  179

Query  180  TGACGTAGAATATGAAAGTGGAAATTTAACCTACACGACATACCGCATTACCGTGACCAA  239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct  180  TGACGTAGAATATGAAAGTGGAAATTTAACCTACACGACATACCGCATTACCGCGACCGA  239

Query  240  AGAGGAGGTCACCTATTTCTTCAGTATCACCAATGAATCCTTCTTCTCAATATTGAGAAT  299
            |||| | | ||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct  240  AGAGAAAGCCACCTATTTCTTCAGTATCACGAATGAATCCTTCTTCTCAATATTGAGATT  299

Query  300  GTCTTATAGCGGCGTGTTGAAGAGGTATACGTGGATTCCAAAACCACAACAAATGTGGAA  359
            ||| |||| ||| |||||| || ||| ||||||| |||||||||||||||||||||| ||
Sbjct  300  GTCCTATACCGGTGTGTTGCAGCGGTCTACGTGGGTTCCAAAACCACAACAAATGTGTAA  359

Query  360  ACGATT--GG-ATAGTCTTTTACCACGTGATACATGCGGTTTATACAATAG-ATGTGGAG  415
            |||| |  || || || ||||||||| |||||||||||||| ||||||| | ||||||||
Sbjct  360  ACGACTAAGGGATCGTGTTTTACCACATGATACATGCGGTTCATACAAT-GTATGTGGAG  418

Query  416  CTTATGGTCTGTGTGACACAAACACATCACCAAACTGTGTTTGCA  460
            ||||||||||||||||||   ||||||||||||||||||||||||
Sbjct  419  CTTATGGTCTGTGTGACATGGACACATCACCAAACTGTGTTTGCA  463



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21916738564


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5