BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg481327

Length=307
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G24693.1 | Symbols:  | Protein of unknown function (PD694200...   405    1e-112


> AT2G24693.1 | Symbols:  | Protein of unknown function (PD694200) 
| chr2:10506058-10506825 FORWARD LENGTH=375
Length=375

 Score =  405 bits (219),  Expect = 1e-112
 Identities = 280/308 (91%), Gaps = 9/308 (3%)
 Strand=Plus/Plus

Query  1    GATATTCTGATTGCATCATCTAGAAACATTTCTAATGGCAACCAAGAAAACTTCATCTCT  60
            ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct  45   GATATTCAGATTGCATCATCTAGAAACATTTCTAATGACAACCAAGAAAACTTCATCTGT  104

Query  61   TTTAATACCTGTGTTGATGGTTTTCGCACTAATCCTTATACCCATGGTTGCAGGCCAACT  120
            | || ||||| ||||| ||||||||||||| |||||||| ||||||||||||||||||||
Sbjct  105  TGTATTACCTTTGTTGCTGGTTTTCGCACTCATCCTTATGCCCATGGTTGCAGGCCAACT  164

Query  121  TAAGGCTACATGTCGTATTGCGGAGTTATGTAAAGGTGCAAAGGAATGCAATGCAAAATG  180
            |||| ||||||||||||||||||||  ||| ||||| ||||||||||| |||||||||||
Sbjct  165  TAAGTCTACATGTCGTATTGCGGAGGCATGGAAAGGCGCAAAGGAATGTAATGCAAAATG  224

Query  181  TGCAGCACTAGGTACCAAGAGAGGGGGTGTTTGTAC-AAAATTCCTAGGTGATGTTTACT  239
            ||||||||||||||| | |||||||||||||||| | |||||||||||||||| ||||||
Sbjct  225  TGCAGCACTAGGTACGACGAGAGGGGGTGTTTGT-CAAAAATTCCTAGGTGATCTTTACT  283

Query  240  GTTGCTGCTGGGATTAATTCCTAATCAAAATGTACTCTCAATTTACAATGAACAATATGT  299
            ||||||||||||||||||||||||| ||||||||||||||||  | ||    ||||||||
Sbjct  284  GTTGCTGCTGGGATTAATTCCTAATTAAAATGTACTCTCAAT--A-AA----CAATATGT  336

Query  300  ACTCGCAT  307
            ||||||||
Sbjct  337  ACTCGCAT  344



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14225772967


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5