BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg481335

Length=526
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G24762.1 | Symbols: AtGDU4, GDU4 | glutamine dumper 4 | chr2...   723    0.0  


> AT2G24762.1 | Symbols: AtGDU4, GDU4 | glutamine dumper 4 | chr2:10559384-10560175 
FORWARD LENGTH=792
Length=792

 Score =  723 bits (391),  Expect = 0.0
 Identities = 485/527 (92%), Gaps = 19/527 (4%)
 Strand=Plus/Plus

Query  1    AGAAAAAATCTGAGAGAAACAGAAGAAACATTaaaaaaaaaaTATGAGGCCATTGAGCAT  60
            |||||||||||||||||||||||||||||| |   ||||||| |||||||||||||||||
Sbjct  58   AGAAAAAATCTGAGAGAAACAGAAGAAACA-T---AAAAAAA-ATGAGGCCATTGAGCAT  112

Query  61   TAAACCAACATCGTTAGATGTAGCGAGACATGCCACATCAGTAGAATCATTCGGGAATCA  120
            |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct  113  TAAACCAACATCGTTAGATGTAGCTAGACATGCCACATCAGTAGAATCATTTGGGAATCA  172

Query  121  CCGACCGCCGATATCTCCGTGGCACTCGCCGGTGCCTTACCTATTCGGTGGTCTTGCGGC  180
            ||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct  173  CCGACCGCCGATATCGCCGTGGCACTCACCGGTGCCGTACCTATTCGGTGGTCTTGCGGC  232

Query  181  GATGTTAGGCCTCATATCCTTTGCTTTACTTATCCTGGCCTGCTCTTACTGGCGCTTTTC  240
            |||||||||||||||| |||| |||||||||||||| |||||||||||||||||||| ||
Sbjct  233  GATGTTAGGCCTCATAGCCTTCGCTTTACTTATCCTAGCCTGCTCTTACTGGCGCTTGTC  292

Query  241  CACCACCAGTGATGACTCCGGCGAAGGCAGCGGCGGAGGAGTCGACGAGGAGAAAGAGAG  300
             ||| || |||||||||||||||||   ||      ||   |||||||||| ||||||||
Sbjct  293  AACCTCCGGTGATGACTCCGGCGAA---AG------AG---TCGACGAGGAAAAAGAGAG  340

Query  301  TCGAACTGGAGTGAAGGCGGCGAGTGCGGCGTACGAGGAGAAGATTCTTGTCATAATGGC  360
            |||  |||||||||||||||| || ||||||| |||||||||| ||||||||||||||||
Sbjct  341  TCGGTCTGGAGTGAAGGCGGCTAGCGCGGCGTGCGAGGAGAAGGTTCTTGTCATAATGGC  400

Query  361  CGGAGATGATTTGCCGAGGTTTCTGGCCACGCCGGCGGCGAACAACTGCATGTGCGGTCA  420
            ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  401  CGGAGATGACTTGCCGAGGTTTCTGGCCACGCCGGCGGCGAACAAATGCATGTGCGGTCA  460

Query  421  CGAGGGTAAAATGGTAATTT-CTAAGGAGGATGGTATTGGTGCTGGAGAAGAGAAAATGG  479
            |||||||| ||||||||||| | |||||||||||||||||||||||||| ||||||||||
Sbjct  461  CGAGGGTAGAATGGTAATTTTC-AAGGAGGATGGTATTGGTGCTGGAGAGGAGAAAATGG  519

Query  480  GAGACAGAGAGAAAGCCAAAGAAAATGAAGAAACAACGAGTCAGTGA  526
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  520  GAGACAGAGAGAAAGCCAAAGAAAATGAAGAAACAACGAGTCAGTGA  566



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25167307647


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5