BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481337
Length=871
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24765.1 | Symbols: ARF3, ARL1, ATARL1 | ADP-ribosylation fa... 1363 0.0
> AT2G24765.1 | Symbols: ARF3, ARL1, ATARL1 | ADP-ribosylation
factor 3 | chr2:10562726-10565198 FORWARD LENGTH=882
Length=882
Score = 1363 bits (738), Expect = 0.0
Identities = 832/874 (95%), Gaps = 20/874 (2%)
Strand=Plus/Plus
Query 1 aagaagaagaaaagatctgaga-gaggtcgaatgatccaagagaagaagaaCAATCTCTC 59
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 2 AAGAAGAAGAAAAGATCTGAGAGGTGGTCGAATGATCCAAGAGAAGAAGAACAATCTCTC 61
Query 60 TTAGATCGTTTGATCTGATCTGATCCAATCGAAGAAGAAGAAGAAGTATGGGAATCTTAT 119
|||||||| | | ||||||||||||||| |||||||||| |||||||||||||
Sbjct 62 TTAGATCG--T--T-TGATCTGATCCAATC------GAAGAAGAAG-ATGGGAATCTTAT 109
Query 120 TCACGCGGATGTTCTCTTCCGTCTTTGGTAACAAAGAAGCTCGAATCCTCGTCCTCGGTC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 110 TCACGCGGATGTTCTCTTCCGTCTTTGGTAACAAAGAAGCTCGAATCCTCGTCCTCGGTC 169
Query 180 TCGACAATGCTGGCAAAACCACAATCCTCTATCGGCTTCAGATGGGCGAAGTTGTCTCTA 239
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 170 TCGACAATGCTGGAAAAACCACAATCCTCTATCGGCTTCAGATGGGGGAAGTTGTCTCTA 229
Query 240 CGATTCCGACTATTGGATTTAACGTTGAGACTGTGCAGTACAACAATATCAAGTTCCAGG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 230 CGATTCCGACTATTGGATTTAACGTTGAGACTGTGCAGTACAACAATATCAAGTTTCAGG 289
Query 300 TCTGGGATTTAGGTGGACAAACGAGCATCAGGCCATACTGGCGATGCTATTTCCCGAATA 359
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 290 TCTGGGATTTAGGTGGACAAACAAGCATCAGGCCATACTGGCGATGCTATTTCCCGAATA 349
Query 360 CACAAGCAGTGATCTATGTTGTTGACTCGAGTGACACAGATAGAATCGGGGTGGCGAAAG 419
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 350 CACAAGCAGTGATCTATGTTGTTGACTCGAGTGATACAGATAGAATCGGGGTGGCGAAAG 409
Query 420 AGGAGTTTCATGCAATTCTGGAGGAAGAGGAATTGAAAGGTGCGGTGGTTCTGATATTTG 479
||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct 410 AGGAGTTTCATGCAATTTTAGAGGAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTG 469
Query 480 CAAACAAGCAGGATCTTCCTGGTGCACTCGATGATGCCGCTGTTACAGAAGCCTTGGAGT 539
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 470 CAAACAAGCAGGATCTTCCCGGTGCACTCGATGATGCGGCTGTTACAGAAGCCTTGGAGT 529
Query 540 TGCATAAGATAAAGAGTCGTCAATGGGCAATCTTCAAAACTTGTGCTGTGAAAGGCGAGG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 TGCATAAGATAAAGAGTCGTCAATGGGCAATCTTCAAAACTTGTGCTGTGAAAGGCGAGG 589
Query 600 GACTTTTCGAGGGATTGGACTGGTTGAGTAATACATTGAAGTCGGGAAGTGGCTAAAATT 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 GACTTTTCGAGGGATTGGACTGGTTGAGTAATACATTGAAGTCGGGAAGTGGCTAAAATC 649
Query 660 ATCTTCATACACCAATCTGTCACATCCCTCAAGAGTGTATCTTTGATCATTTTTACTTAT 719
||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 650 ATCGTCATACACCAATCTGTCACATTTCTCAAGAGTGTAACTTTGATCATTTTTACTTAT 709
Query 720 TGGTTTGTTTAGTATCATTTTT--ATCTTAGTTCTTCATCTTAAAGAGTTAATATCAATG 777
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 710 TGGTTTGTTTAGTATCTTTTTTTTATCTTAGTTCTTCATCTTAAAGAGTTAATATCAATG 769
Query 778 ACGTGTTCACTTAATATTGTCTCTTTTCTTTGTTGTTTTGTTTCATTCTGaaaaaaaaaa 837
|| ||||||||||||||| ||||||| | |||||||||||||||||||||| ||||||
Sbjct 770 ACATGTTCACTTAATATT--CTCTTTT-T--GTTGTTTTGTTTCATTCTGAAAGAAAAAA 824
Query 838 CTCAACACGGATTTTTGATTGAGACCCGTAAGGG 871
| |||||| |||||||||||||||||| ||||||
Sbjct 825 CCCAACACAGATTTTTGATTGAGACCCATAAGGG 858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42498088362
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5