BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481339
Length=1105
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24790.1 | Symbols: COL3, ATCOL3 | CONSTANS-like 3 | chr2:10... 1456 0.0
> AT2G24790.1 | Symbols: COL3, ATCOL3 | CONSTANS-like 3 | chr2:10566898-10568145
FORWARD LENGTH=1145
Length=1145
Score = 1456 bits (788), Expect = 0.0
Identities = 1021/1129 (90%), Gaps = 34/1129 (3%)
Strand=Plus/Plus
Query 1 aaaaaaaaCAGT----AGAGATAGAGAGAGAAACAATGGCATCGTCG---AGACTTTGCG 53
|||||||||||| ||||||| |||||| | ||||||| |||||| ||||||||||
Sbjct 27 AAAAAAAACAGTAGAGAGAGATATAGAGAGCATCAATGGCGTCGTCGTCAAGACTTTGCG 86
Query 54 ATTCGTGCAAATCGACGACAGCCACTCTATTCTGCCGCGCAGACGCCGCATTTCTCTGCG 113
||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||
Sbjct 87 ATTCGTGCAAATCGACGGCAGCAACTCTATTCTGCCGCGCAGACGCCGCGTTTCTCTGCG 146
Query 114 GCGTCTGCGACGGTAAAATCCACACAGCTGACAAACTCGCTTCACGTCACGAGCGAGTTT 173
||| |||||||||||| |||||||||||| |||||||||| ||||||||||| |||||||
Sbjct 147 GCGACTGCGACGGTAAGATCCACACAGCTAACAAACTCGCATCACGTCACGAACGAGTTT 206
Query 174 GGCTATGTGAAGTCTGTGAACAAGCACCAGCACACGTCACGTGCAAAGCTGACGCAGCCG 233
||||||||||||| || |||||||||||||||||||||||||||||||||||||| || |
Sbjct 207 GGCTATGTGAAGTATGCGAACAAGCACCAGCACACGTCACGTGCAAAGCTGACGCCGCTG 266
Query 234 CGCTT-TGCGTCACGTGTGATCGTGATATCCACTCAGCCAATCTGCTCTCTAGCCGCCAC 292
|| || ||||||||||| || ||||||||||||||||| |||| |||||| ||||||||
Sbjct 267 CG-TTATGCGTCACGTGCGACCGTGATATCCACTCAGCTAATCCACTCTCTCGCCGCCAC 325
Query 293 GAGCGCGTTCCAATCACTCCTTTCTACGACACT-T--CTCCAGCAAAATCCGCTTCTTCC 349
|||||||| ||||||||||||||||||||| || | |||||||||||||||||| |||
Sbjct 326 GAGCGCGTACCAATCACTCCTTTCTACGACGCTGTAGGTCCAGCAAAATCCGCTTCCTCC 385
Query 350 TCCGTCAGTTTTGTAGAAGAAGATGGTGGTGACGTCTCTGCGTCGTGGCTTTTA-CATAA 408
||||||| ||| ||||| |||||||| ||||||||| |||| |||||||||||| | |||
Sbjct 386 TCCGTCAATTTCGTAGATGAAGATGGCGGTGACGTCACTGCTTCGTGGCTTTTAGC-TAA 444
Query 409 AGAAGGAATCGAAATCACAAATTTGTTTTCCGATCTTGATTATCCGAAGATGGAGGTTAC 468
|||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 445 AGAAGGAATCGAAATCACTAATTTGTTCTCCGATCTTGATTATCCGAAGATTGAGGTAAC 504
Query 469 GTCGGAGAATAATAGCTCCGGTAACGACGGAGTTGTTCCTGTACAGAGCAAGATGTTTCT 528
||||||| | |||||||||||||||||||||||||||||||| |||| ||| |||||||
Sbjct 505 GTCGGAGGAGAATAGCTCCGGTAACGACGGAGTTGTTCCTGTGCAGAATAAGTTGTTTCT 564
Query 529 CAATGAAGATTACTTCAATTTCGATCTCTCTGCTTCCAAAGTTTCTTCAA-ACGGATTCA 587
|| |||||||||||||||||||||||||||||||||||| |||| |||| | |||||||
Sbjct 565 TAACGAAGATTACTTCAATTTCGATCTCTCTGCTTCCAAAATTTC-TCAACAAGGATTCA 623
Query 588 ATTTCATCAACCAAACGGTTT---CGAGATCGATTGATGTAGCGTTGGTGCCGGAAAGTG 644
|||||||||||||||| |||| ||||| |||| |||||| |||||||||| |||||||
Sbjct 624 ATTTCATCAACCAAACTGTTTCGACGAGAACGATAGATGTACCGTTGGTGCCTGAAAGTG 683
Query 645 GAGGAGTTACGGCGGAGATAACAAACACGACGACGGTGACGCCAGCTGTGCAGTTGTCAC 704
||||||| ||||||||||| || |||||| || |||||||||||||||||| ||||
Sbjct 684 GAGGAGTGACGGCGGAGATGACGAACACG--GA----GACGCCAGCTGTGCAGTTATCAC 737
Query 705 CGGCGGAGAGGGAAGCTAGGGTTTTGAGGTATAGAGAGAAGAGGAAGAATCGGAAATTTG 764
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 CGGCGGAGAGGGAAGCAAGGGTTTTGAGGTATAGAGAGAAGAGGAAGAATCGGAAATTTG 797
Query 765 AGAAGACGATTAGGTATGCGTCGCGTAAAGCTTACGCTGAGATGAGACCGAGAATCAAAG 824
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 798 AGAAGACGATTAGGTATGCGTCGCGTAAAGCTTACGCTGAGATGAGGCCGAGAATCAAAG 857
Query 825 GACGTTTTGCTAAGAGAACAGAATCGAGAGAGAAGGATGGTGGAGACGTTGGAGTTTATG 884
|||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 858 GACGTTTTGCTAAGAGAACAGATTCGAGAGAGAATGATGGTGGAGACGTCGGAGTTTATG 917
Query 885 GCGGATTCGGCGTTGTTCCGAGTTTCTGATCTTTTCCGGTTAAAGAAAGATGGTAGTA-T 943
|||||||||| ||||||||||||||||||| ||||||||| ||||||| ||||||||| |
Sbjct 918 GCGGATTCGGTGTTGTTCCGAGTTTCTGATATTTTCCGGTGAAAGAAACATGGTAGTAGT 977
Query 944 ----CGGTTAATAGAAGATTAAGGATAATTAAAACTAAAATGTATCCTGATTTAATCAGG 999
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 978 ATATCGGTTAATAGCAGATTAAGGATAATTAAAACTAAAATGTTTCCTGATTTAATCAGG 1037
Query 1000 GGATAAGTT-TA-TTAGAAGATTGTTGtttttttGAATTAATTTTCACAATTGTATGCTA 1057
|| |||||| | |||||||||||||||||||| ||||||||| |||||||||||| |||
Sbjct 1038 GGCTAAGTTATTGTTAGAAGATTGTTGTTTTTT-GAATTAATTCTCACAATTGTATCCTA 1096
Query 1058 AATTATATAGTTAAAA-AATGTTGAACTAATAAAATTTGATTTACAATC 1105
|||||||||||| | ||||||||||||||||| ||||||||||||||
Sbjct 1097 AATTATATAGTTTACTTAATGTTGAACTAATAAATTTTGATTTACAATC 1145
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54166388055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5