BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481339 Length=1105 Score E Sequences producing significant alignments: (Bits) Value AT2G24790.1 | Symbols: COL3, ATCOL3 | CONSTANS-like 3 | chr2:10... 1456 0.0 > AT2G24790.1 | Symbols: COL3, ATCOL3 | CONSTANS-like 3 | chr2:10566898-10568145 FORWARD LENGTH=1145 Length=1145 Score = 1456 bits (788), Expect = 0.0 Identities = 1021/1129 (90%), Gaps = 34/1129 (3%) Strand=Plus/Plus Query 1 aaaaaaaaCAGT----AGAGATAGAGAGAGAAACAATGGCATCGTCG---AGACTTTGCG 53 |||||||||||| ||||||| |||||| | ||||||| |||||| |||||||||| Sbjct 27 AAAAAAAACAGTAGAGAGAGATATAGAGAGCATCAATGGCGTCGTCGTCAAGACTTTGCG 86 Query 54 ATTCGTGCAAATCGACGACAGCCACTCTATTCTGCCGCGCAGACGCCGCATTTCTCTGCG 113 ||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||| Sbjct 87 ATTCGTGCAAATCGACGGCAGCAACTCTATTCTGCCGCGCAGACGCCGCGTTTCTCTGCG 146 Query 114 GCGTCTGCGACGGTAAAATCCACACAGCTGACAAACTCGCTTCACGTCACGAGCGAGTTT 173 ||| |||||||||||| |||||||||||| |||||||||| ||||||||||| ||||||| Sbjct 147 GCGACTGCGACGGTAAGATCCACACAGCTAACAAACTCGCATCACGTCACGAACGAGTTT 206 Query 174 GGCTATGTGAAGTCTGTGAACAAGCACCAGCACACGTCACGTGCAAAGCTGACGCAGCCG 233 ||||||||||||| || |||||||||||||||||||||||||||||||||||||| || | Sbjct 207 GGCTATGTGAAGTATGCGAACAAGCACCAGCACACGTCACGTGCAAAGCTGACGCCGCTG 266 Query 234 CGCTT-TGCGTCACGTGTGATCGTGATATCCACTCAGCCAATCTGCTCTCTAGCCGCCAC 292 || || ||||||||||| || ||||||||||||||||| |||| |||||| |||||||| Sbjct 267 CG-TTATGCGTCACGTGCGACCGTGATATCCACTCAGCTAATCCACTCTCTCGCCGCCAC 325 Query 293 GAGCGCGTTCCAATCACTCCTTTCTACGACACT-T--CTCCAGCAAAATCCGCTTCTTCC 349 |||||||| ||||||||||||||||||||| || | |||||||||||||||||| ||| Sbjct 326 GAGCGCGTACCAATCACTCCTTTCTACGACGCTGTAGGTCCAGCAAAATCCGCTTCCTCC 385 Query 350 TCCGTCAGTTTTGTAGAAGAAGATGGTGGTGACGTCTCTGCGTCGTGGCTTTTA-CATAA 408 ||||||| ||| ||||| |||||||| ||||||||| |||| |||||||||||| | ||| Sbjct 386 TCCGTCAATTTCGTAGATGAAGATGGCGGTGACGTCACTGCTTCGTGGCTTTTAGC-TAA 444 Query 409 AGAAGGAATCGAAATCACAAATTTGTTTTCCGATCTTGATTATCCGAAGATGGAGGTTAC 468 |||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| || Sbjct 445 AGAAGGAATCGAAATCACTAATTTGTTCTCCGATCTTGATTATCCGAAGATTGAGGTAAC 504 Query 469 GTCGGAGAATAATAGCTCCGGTAACGACGGAGTTGTTCCTGTACAGAGCAAGATGTTTCT 528 ||||||| | |||||||||||||||||||||||||||||||| |||| ||| ||||||| Sbjct 505 GTCGGAGGAGAATAGCTCCGGTAACGACGGAGTTGTTCCTGTGCAGAATAAGTTGTTTCT 564 Query 529 CAATGAAGATTACTTCAATTTCGATCTCTCTGCTTCCAAAGTTTCTTCAA-ACGGATTCA 587 || |||||||||||||||||||||||||||||||||||| |||| |||| | ||||||| Sbjct 565 TAACGAAGATTACTTCAATTTCGATCTCTCTGCTTCCAAAATTTC-TCAACAAGGATTCA 623 Query 588 ATTTCATCAACCAAACGGTTT---CGAGATCGATTGATGTAGCGTTGGTGCCGGAAAGTG 644 |||||||||||||||| |||| ||||| |||| |||||| |||||||||| ||||||| Sbjct 624 ATTTCATCAACCAAACTGTTTCGACGAGAACGATAGATGTACCGTTGGTGCCTGAAAGTG 683 Query 645 GAGGAGTTACGGCGGAGATAACAAACACGACGACGGTGACGCCAGCTGTGCAGTTGTCAC 704 ||||||| ||||||||||| || |||||| || |||||||||||||||||| |||| Sbjct 684 GAGGAGTGACGGCGGAGATGACGAACACG--GA----GACGCCAGCTGTGCAGTTATCAC 737 Query 705 CGGCGGAGAGGGAAGCTAGGGTTTTGAGGTATAGAGAGAAGAGGAAGAATCGGAAATTTG 764 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 738 CGGCGGAGAGGGAAGCAAGGGTTTTGAGGTATAGAGAGAAGAGGAAGAATCGGAAATTTG 797 Query 765 AGAAGACGATTAGGTATGCGTCGCGTAAAGCTTACGCTGAGATGAGACCGAGAATCAAAG 824 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 798 AGAAGACGATTAGGTATGCGTCGCGTAAAGCTTACGCTGAGATGAGGCCGAGAATCAAAG 857 Query 825 GACGTTTTGCTAAGAGAACAGAATCGAGAGAGAAGGATGGTGGAGACGTTGGAGTTTATG 884 |||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| Sbjct 858 GACGTTTTGCTAAGAGAACAGATTCGAGAGAGAATGATGGTGGAGACGTCGGAGTTTATG 917 Query 885 GCGGATTCGGCGTTGTTCCGAGTTTCTGATCTTTTCCGGTTAAAGAAAGATGGTAGTA-T 943 |||||||||| ||||||||||||||||||| ||||||||| ||||||| ||||||||| | Sbjct 918 GCGGATTCGGTGTTGTTCCGAGTTTCTGATATTTTCCGGTGAAAGAAACATGGTAGTAGT 977 Query 944 ----CGGTTAATAGAAGATTAAGGATAATTAAAACTAAAATGTATCCTGATTTAATCAGG 999 |||||||||| |||||||||||||||||||||||||||| |||||||||||||||| Sbjct 978 ATATCGGTTAATAGCAGATTAAGGATAATTAAAACTAAAATGTTTCCTGATTTAATCAGG 1037 Query 1000 GGATAAGTT-TA-TTAGAAGATTGTTGtttttttGAATTAATTTTCACAATTGTATGCTA 1057 || |||||| | |||||||||||||||||||| ||||||||| |||||||||||| ||| Sbjct 1038 GGCTAAGTTATTGTTAGAAGATTGTTGTTTTTT-GAATTAATTCTCACAATTGTATCCTA 1096 Query 1058 AATTATATAGTTAAAA-AATGTTGAACTAATAAAATTTGATTTACAATC 1105 |||||||||||| | ||||||||||||||||| |||||||||||||| Sbjct 1097 AATTATATAGTTTACTTAATGTTGAACTAATAAATTTTGATTTACAATC 1145 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54166388055 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5