BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481340
Length=990
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24800.1 | Symbols: | Peroxidase superfamily protein | chr2... 1535 0.0
AT4G31760.1 | Symbols: | Peroxidase superfamily protein | chr4... 499 2e-140
> AT2G24800.1 | Symbols: | Peroxidase superfamily protein | chr2:10571255-10572570
REVERSE LENGTH=990
Length=990
Score = 1535 bits (831), Expect = 0.0
Identities = 937/990 (95%), Gaps = 0/990 (0%)
Strand=Plus/Plus
Query 1 ATGGCGTTGCAGTTTTCTTCATGCAGACCAAAATCCACcttcttctcctctcttcttcta 60
|||||||||||||||| |||||||| |||||||| || ||| |||||||||||||||||
Sbjct 1 ATGGCGTTGCAGTTTTTTTCATGCAAACCAAAATATACATTCCTCTCCTCTCTTCTTCTA 60
Query 61 cttctgcttctttctccctcagtagctgagctctctttcaacttctACGCCGGTTCTTGT 120
||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTTTGCTTCTTTCTTCTTCAGTAGCTGAGCTCTCTTTCAACTTCTACGCCGGTTCTTGT 120
Query 121 CCCGGAGCTGAGTTAATCGTCAGGAACACCGTTAGATCTGCTTCTTCCTCTGATCCATCA 180
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 CCTGGAGCTGAGTTAATCGTCAGAAACACCGTTAGATCTGCTTCTTCCTCTGATCCATCA 180
Query 181 GTCCTTGGGAAGCTCCTACGTCTCATCTTCCATGATTGCTTCGTCAAGGGTTGTGATGGC 240
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 181 GTCCTTGGGAAGCTCCTACGTCTCATCTTCCATGACTGCTTCGTCCAGGGTTGTGATGGC 240
Query 241 TCGGTGTTGATTCGAGGGAACGGTACAGAGCGAAGCGACCCTGGGAATGCATCTCTAGGA 300
|| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 TCAGTGTTGATTCGAGGAAACGGTACAGAGCGAAGCGACCCTGGGAATGCGTCTCTAGGA 300
Query 301 GGATTCACTGTTATAGAAAGCATCAAAAATGTCCTCGAAATCTTTTGTCCCGGCACAGTG 360
|||||| |||| ||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 301 GGATTCGCTGTGATAGAAAGCGTCAAAAATATCCTCGAAATCTTTTGTCCCGGCACAGTC 360
Query 361 TCTTGCGCTGATATCCTCGTTCTTGCTGCTAGAGATGCAGTAGAAGCTCTAGGAGGACCG 420
||||| |||||||| || |||||||| || |||||||||||||||||||| |||||||||
Sbjct 361 TCTTGTGCTGATATACTTGTTCTTGCCGCAAGAGATGCAGTAGAAGCTCTCGGAGGACCG 420
Query 421 GTAGTTCCAATACCGACAGGAAGAAGAGACGGGACAGTCTCAATGGCAGAAAATGTCAGA 480
|||||||| ||||||||||| || |||||||||| |||||||||||||| ||||||||||
Sbjct 421 GTAGTTCCGATACCGACAGGGAGGAGAGACGGGAGAGTCTCAATGGCAGCAAATGTCAGA 480
Query 481 CCAAACATCATCGATACTGACTTCACAGTTGATAAGATGATCAATATCTTTTCCTCTAAA 540
||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 481 CCAAACATCATAGATACCGATTTCACAGTTGATAAGATGATCAATATCTTTTCCTCTAAA 540
Query 541 GGCTTATCTGTTCAAGACCTAGTGGTCCTCTCTGGAGCACACACTATTGGAGCTGCGCAT 600
|||||||||||||| || ||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 541 GGCTTATCTGTTCATGATCTAGTTGTCCTCTCAGGAGCGCACACTATTGGAGCTGCGCAT 600
Query 601 TGCAACACATTCAACAGCAGGTTTAAGCTTGATCCAAAAGGCAACTTAGAGCTAATAGAC 660
|| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 601 TGTAACACGTTCAACAGCAGGTTTAAGCTTGATCCAAAAGGCAACTTAGAACTAATAGAC 660
Query 661 GCGTCTCTCGATAACTCCTATGCGCAAACACTTGTAAACAAGTGTTCATCGTCATTAGAT 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 661 GCGTCTCTCGATAACTCCTATGCGCAAACACTTGTAAACAAGTGTTCATCGTCACTAGAT 720
Query 721 CCAACGACCACGGTCGTTGACAACGATCCAGAGACATCTTCGACGTTCGATAATCAGTAC 780
|||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 721 CCAACGACCACGGTGGTTGATAACGATCCAGAGACATCGTCGACGTTCGATAATCAGTAC 780
Query 781 TACAAGAATCTGTTGGCGCACAAGGGTTTGTTTCAGACGGATTCAGCTCTCATGGAAGAT 840
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 781 TACAAGAATCTGTTGGCTCACAAGGGTTTGTTTCAAACGGATTCAGCTCTCATGGAAGAT 840
Query 841 GATCGAACGAGGAAGATTGTGGAGATTCTTGCGAATGATCAGGAGAGTTTCTTCGATAGA 900
||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 841 GATCGGACGAGGAAGATTGTTGAGATTCTTGCGAATGATCAGGAGAGTTTTTTCGATAGA 900
Query 901 TGGACTGAGTCTTTTTTGAAGATGAGTTTGATGGGTGTGAGAGTTGGTGAAGAAGGTGAG 960
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 901 TGGACTGAGTCTTTTTTGAAGATGAGTTTGATGGGAGTGAGAGTTGGTGAAGAAGGTGAG 960
Query 961 ATTAGACGTTCTTGTTCTGCTGTTAATTAA 990
||||||||||||||||||||||||||||||
Sbjct 961 ATTAGACGTTCTTGTTCTGCTGTTAATTAA 990
> AT4G31760.1 | Symbols: | Peroxidase superfamily protein | chr4:15368032-15369724
REVERSE LENGTH=1065
Length=1065
Score = 499 bits (270), Expect = 2e-140
Identities = 693/890 (78%), Gaps = 57/890 (6%)
Strand=Plus/Plus
Query 91 ctct-ctttcaacttctACGCCGGTTCTTGTCCCGGAGCTGAGTTAATCGTCAGGAACAC 149
|||| |||| || ||||| || |||||||| | | ||| ||||| | ||||| |||||
Sbjct 85 CTCTCCTTT-AATTTCTATGCTAGTTCTTGTTCTGTAGCCGAGTTTCTAGTCAGAAACAC 143
Query 150 CGTTAGATCTGCTTCTTCCTCTGATCCATCAG-TCCTTGGGAAGCTCCTACGTCTCATCT 208
||||||||| ||| | ||||| |||||| | | ||| ||||| ||||| ||||| |||
Sbjct 144 CGTTAGATCAGCTACCTCCTCCGATCCAAC-GATCCCCGGGAAACTCCTTCGTCTTTTCT 202
Query 209 TCCATGATTGCTTCGTCAAGGGTTGTGATGGC-TCGGTGTTGATTCGAGGGAACGGTACA 267
|||| || || |||||| ||||||||||| || || |||||||| | |||||| | |||
Sbjct 203 TCCACGACTGTTTCGTCCAGGGTTGTGAT-GCATCAGTGTTGATACAAGGGAATAGCACA 261
Query 268 GAGCGAAGCGA-CCCTGGGAATGCATCTCTAGGAGGATTCACTGTTATAGA-A-AGCATC 324
||| |||||| ||| || || |||||||| ||||||||| | || ||||| | ||| |
Sbjct 262 GAGAAAAGCGATCCC-GGAAACGCATCTCTTGGAGGATTCTCAGTCATAGACACAGC--C 318
Query 325 AAAAATGTCC-TCGA-AATCTTTTGTCCCGG-CACAGTGTCTTGCGCTGATATCCTCGTT 381
|| |||| || |||| ||| || ||| |||| ||| || ||||||||||| || | |
Sbjct 319 AAGAATG-CCATCGAGAAT-TTATGT-CCGGCCACTGTTTCTTGCGCTGACATAGTTGCA 375
Query 382 CTTGCTGCTAGAGATGCAGTAGAAGCT-CTAGGAGGACCGGTAGTTCCA-ATACCGACAG 439
|||||||||||||| || || |||||| | |||||||||||| ||| | || |||||||
Sbjct 376 CTTGCTGCTAGAGACGCCGTCGAAGCTGC-AGGAGGACCGGTGGTT-GAGATTCCGACAG 433
Query 440 GAAGAAGAGACGGGACAGTCTCAATGGCAGAAAATGTCAGACCAAACATCATCGATACTG 499
| || |||||||||| || || ||||| | ||| || ||||| ||||||||||| || |
Sbjct 434 GGAGGAGAGACGGGAAAGAATCGATGGCTGCAAACGTGAGACCGAACATCATCGACACAG 493
Query 500 ACTTCACAGTTGAT-AAGATGATCAATATCTTTTCCTCTAAAGGCTTATCTGTTCAAGAC 558
| || || | ||| || |||||| || ||| || || |||||||| || |||||||
Sbjct 494 ATTTTACTCTCGATCAA-ATGATCGATGCCTTCTCTTCCAAAGGCTTGTCCATTCAAGAT 552
Query 559 CTAGTGGTCCTCTCTGGAGCACACACTATTGGAGC-TGCGCATTGCAACACATTCAACAG 617
|| || |||||||| ||||||||||| |||||||| | | || || ||| ||||||| |
Sbjct 553 CTCGTCGTCCTCTCAGGAGCACACACAATTGGAGCAT-CACACTGTAACGCATTCAATGG 611
Query 618 CAGGTTT-AAGCTTGATC-CAAAAGGCAACTTAGAGCTAATAGACGCGTCTCTCGATAAC 675
|||||| || | || | | ||||| ||||| ||| |||| || ||||||||||| |||
Sbjct 612 AAGGTTTCAA-CGAGA-CTCGAAAGGAAACTTCGAGGTAATTGATGCGTCTCTCGACAAC 669
Query 676 TCCTATGCGCA-A-ACACTTGTAAACAAGTGTTCATCGTCATTAGATCCAACGACCACGG 733
||||| |||| | ||||| | ||||||||||| || || | |||| | | || |
Sbjct 670 TCCTA--CGCAGAGACACTAATGAACAAGTGTTCGTCCTC-GGA-ATCC-TC-ATCATTG 723
Query 734 TCGT-TGA-CAACGATCCAGAGACATCTTCGACG--TTCGATAATCAGTACTACAAGAAT 789
| | ||| |||||||||||||||||| | | || ||||||||||||||||| | ||||
Sbjct 724 AC-TGTGAGCAACGATCCAGAGACATC-T-GCCGTATTCGATAATCAGTACTATAGGAAT 780
Query 790 CTGTTG-G-CGCACAAGGGTTTGTTTCAGACGGATTCAGCTCTCATGGAAGATGATCGAA 847
| ||| | |||||||||||||||||||||||||||| ||| | ||||| ||| |||| |
Sbjct 781 C--TTGAGACGCACAAGGGTTTGTTTCAGACGGATTCTGCTTTGATGGAGGATAATCGGA 838
Query 848 CGAGGA-AGATTGTGGAG-ATTCTTGCGAATGATCAGGAGAG-TTTCTTCGATAGATGGA 904
|||||| | || |||||| | | | |||| |||| |||| || ||| ||| | |||||||
Sbjct 839 CGAGGACA-ATGGTGGAGGAAT-TAGCGAGTGATGAGGAAAGCTTTTTTCAA-AGATGGA 895
Query 905 CTGAGTCTTTTTTGAAGA-TGAGTTTGATGGGTGTGAGAGTTGGTGAAGA 953
|||||| ||| |||| | ||||| || | ||||||||||||||||||||
Sbjct 896 GTGAGTCGTTTGTGAA-ACTGAGTATGGTTGGTGTGAGAGTTGGTGAAGA 944
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48475951855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5