BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481345
Length=1523
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24850.1 | Symbols: TAT3, TAT | tyrosine aminotransferase 3 ... 2278 0.0
> AT2G24850.1 | Symbols: TAT3, TAT | tyrosine aminotransferase
3 | chr2:10582830-10585216 REVERSE LENGTH=1642
Length=1642
Score = 2278 bits (1233), Expect = 0.0
Identities = 1431/1527 (94%), Gaps = 11/1527 (1%)
Strand=Plus/Plus
Query 1 TCACAACCAAAAGAAGAATTCGAACGCAAGACAGAAAGATCAATGGCGAGCAACGGTGAT 60
||||||| |||||||||| || |||||||||||||||||||||||||||||||||| | |
Sbjct 23 TCACAACTAAAAGAAGAACTCAAACGCAAGACAGAAAGATCAATGGCGAGCAACGGAG-T 81
Query 61 GA-CAACTGTAACGCAAACGCCAACGTTTGGCGATTCAAAGGAAACGGTGCAACGAGTGA 119
| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 82 TACCAACTGTAACGCAAACGCCAATGTTTGGCGGTTCAAAGGAAACGGTGCAACGAGTGA 141
Query 120 TGCGGCGGCGGTGACTTTGAGAAAGCTTGCTTTCGGGATGTTCAAAAACTGCACCATGAA 179
||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 142 TGCGGCGGCGGTGACGTTGAGAAAGCTTGCTTTTGGGATGTTTAAAAACTGCACCATGAA 201
Query 180 CAGTGGAAAGACCATTTTGTTCCCAACTCCCGGCGAGCCCTCCGCTCATCCCAACTTCAG 239
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 202 CAGTGGAAAGACCATTTTGTTCCCAACTCCCGGCGAGCCCTCCGCCCATTCCAACTTCAG 261
Query 240 GACTTGCCCCGAGGCGGAGGAAGCTGTGGCTGCAGCCGCACGCTCCGGCATGGCTAACTC 299
||||||||| || || |||||||| || || ||||| |||||||||||||||||||||||
Sbjct 262 GACTTGCCCGGAAGCCGAGGAAGCCGTTGCCGCAGCTGCACGCTCCGGCATGGCTAACTC 321
Query 300 TTACGCACCTAGCCCGGGAGTTTTCAAGGCTAGAAGGGCGGTGGCTGATTATTTAAACGT 359
||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 322 TTACGCACCCAGCCCTGGAGTTTTCAAGGCTAGAAGGGCGGTGGCTGAATATTTAAACGG 381
Query 360 AGAGCTTCCAACGAAGCTGAA-GCCAGAAGATGTGTATATCACCGGAGGATGTAACCAAG 418
||| ||||| ||||||||||| ||| || |||||||||||||||||||||||||||||||
Sbjct 382 AGAACTTCCGACGAAGCTGAAGGCC-GAGGATGTGTATATCACCGGAGGATGTAACCAAG 440
Query 419 CCATAGAGATTGT-ATTAGATTCTCTTGCCGGAAATCCAGCCGCCAACATTCTACTTCCA 477
|||||||||| || | ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 441 CCATAGAGATCGTGA-TAGATTCTCTTGCCGGAAATCCATCCGCCAACATTCTACTTCCA 499
Query 478 AGGCCGGGCTATCCTCACTACGATGCTCGTGCTGTCTATAACGGCCTTGAGATTCGCAAA 537
|||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 500 AGGCCGGGATATCCTCACTACGATGCTCGTGCTGTCTATAGCGGCCTCGAGATTCGCAAA 559
Query 538 TACGATCTTCTCCCCGAGAGTGATTGGGAAATCGATCTCGACGGCCTTC-AGGCTGCTGC 596
||||||||||||||||||||||||||||||||| ||||||| |||| || |||| |||||
Sbjct 560 TACGATCTTCTCCCCGAGAGTGATTGGGAAATCAATCTCGATGGCC-TCGAGGCGGCTGC 618
Query 597 GGATGAGAATACCGTCGCAATGGTTATCATCAACCCCAATAATCCATGTGGAAACGTCTA 656
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 619 GGATGAGAATACCGTCGCAATGGTAATCATCAACCCCAACAATCCATGTGGAAACGTCTA 678
Query 657 CACCTACGACCATCTCAACAAGGTCGCGGAAATGGCTAGGAAACTCGGTATATTGATAAT 716
|||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||
Sbjct 679 CACCTACGACCATCTCAACAAGGTCGCGGAGATGGCTAGAAAACTCGGTATAATGATAAT 738
Query 717 ATCCGACGAAGTATACGATCATGTTGTGTATGGAGACATGCCTTTTATTCCCATGGGGAA 776
||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 739 ATCCGACGAAGTATATGATCATGTTGTATATGGAGACAAGCCTTTTATTCCCATGGGGAA 798
Query 777 GTTTGCATCGATAGCTCCGGTGATCACGCTCGGATCCATATCCAAAGGGTGGGTCGTCCC 836
||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 799 GTTTGCATCAATAGCTCCGGTGATCACGCTCGGATCCATATCCAAAGGATGGGTCAACCC 858
Query 837 GGGCTGGAGAGTTGGCTGGATCGCCATGAACGATCCCAAGGGTATCTTTATATCTACAGG 896
||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||
Sbjct 859 AGGCTGGAGAGTTGGCTGGATCGCCATGAACGATCCTAATGGTATCTTTGTATCTACAGG 918
Query 897 GGTAGTTCAAGCAATAGAGGATTTTCTTGATTTAACTCCACAACCTTCATTTATTCTTCA 956
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 919 GGTAGTTCAAGCAATAGAGGATTTTCTTGATTTAACTCCACAGCCTTCATTTATTCTCCA 978
Query 957 GGAAGCACTTCCTGATATATTGGAGAAAACACCTAAAGAGTTCTTCGACAAGAAGATCAA 1016
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 979 GGAAGCACTTCCTGATATATTGGAGAAAACACCTAAAGAGTTCTTCGAGAAGAAGATCAA 1038
Query 1017 AGCCATGAGGCGTAACGTCGAGCTTTCATGTGAGAGGCTCAAGGACATTCCTTGTCTCTT 1076
||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1039 AGCCATGAGACGCAACGTCGAGCTTTCATGTGAGAGGCTCAAGGATATTCCTTGTCTCTT 1098
Query 1077 TTGTCCCAAGAAACCCGAATCTTGTTCTTATTTATGGTTGAAGCTTGACACATCAATGTT 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1099 TTGTCCCAAGAAACCCGAATCTTGTTCTTATTTATGGTTGAAGCTTGACACATCAATGTT 1158
Query 1137 GGATAATATCAAAAATGATTTTGATTTCTGCACGAAGCTAGTTAGTGAGGAGAGTCTTAT 1196
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1159 GAATAATATCAAAAATGATTTTGATTTCTGCACGAAGCTAGTTAGTGAGGAGAGTCTTAT 1218
Query 1197 CCTAATACCAGGAGTGGCTCTAGGGACAGAGAATTGGGTGAGGATATCGATCGGAACCGA 1256
||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1219 CCTTATACCAGGAGTGGCTCTAGGGGCAGAGAATTGGGTGAGGATATCGATAGGAACCGA 1278
Query 1257 CGAATCAGTGGTAGAAGAAATATTTGACAGACTAAAAGGTTTCTATGATCGTCATGCCAT 1316
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1279 CGAATCAGTGGTACAAGAAATATTTGACAGACTAAAAGGTTTCTATGATCGTCATGCCAT 1338
Query 1317 CTCCAAGGGAGCAATCACACTCAATGGTCATGCCATTAACCAAATAGTCGTCTCTGTCGT 1376
|||||||| ||| |||| ||||| ||| |||||||||||||| || ||||||||||||
Sbjct 1339 CTCCAAGGAAGCTATCAAACTCAGTGGCCATGCCATTAACCAGATCGTCGTCTCTGTCA- 1397
Query 1377 A-TGATTGAAGTTGTCTTTTGCCACAAGTCCACATTAGAGTTTCTGTGTACTTCCATAAT 1435
| |||||| ||| ||| | |||||||||||||||||| | ||| || ||| |||| ||||
Sbjct 1398 ACTGATTGTAGTAGTCCTATGCCACAAGTCCACATTATAATTTGTGCGTAATTCCTTAAT 1457
Query 1436 TATCAGGAACACAATCAAGAGAAAACAGCATTGTATAATGAAATAAAGATGTGTGAAATA 1495
|||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||| |
Sbjct 1458 TATCAGGAACACAATCAAGA-AAAATAGCATTGGATAATGAAATAAAGATGTGTGAAAAA 1516
Query 1496 TAAAATGATACTGGTTTTCATTATTAT 1522
||||| |||| | ||||||||||||||
Sbjct 1517 TAAAAGGATATTTGTTTTCATTATTAT 1543
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75150215865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5