BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481346
Length=772
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24860.1 | Symbols: | DnaJ/Hsp40 cysteine-rich domain super... 833 0.0
> AT2G24860.1 | Symbols: | DnaJ/Hsp40 cysteine-rich domain superfamily
protein | chr2:10586775-10588329 REVERSE LENGTH=867
Length=867
Score = 833 bits (451), Expect = 0.0
Identities = 533/572 (93%), Gaps = 8/572 (1%)
Strand=Plus/Plus
Query 1 ATTTAAACCTTCTCGGCgaagaagaagaagaagaagagaaAATGGCGATTTGCATGTGTT 60
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 49 ATTTCAACCTTCTCGGCGAAGAAGAAGAAGAAGAAGAGAAAATGACGATTTGCATGTGTT 108
Query 61 GCGACTCACATCTCGTATCATCGAAATCGACTATGAATCCATGGAATTCGCC-AAAACGA 119
|||| |||||||||| | | ||||||||| | | |||||||||||||| || | | |
Sbjct 109 GCGATTCACATCTCG--T-AGCGAAATCGATTCTAAATCCATGGAATTCTCCTAGGA-TA 164
Query 120 ACGAAGCTAGGTTTTGTATTAGTCGGTCGCCGCTTTCCGGCTACTACTACCGTCAAAGCT 179
|||||||||||||| ||| ||||| |||||| ||||| ||||||||||||||||| |||
Sbjct 165 ACGAAGCTAGGTTTCGTACCAGTCGTTCGCCGTTTTCCAGCTACTACTACCGTCAAGGCT 224
Query 180 TCGGCGGTGGATTCACCTGAGAGTTCTTCCAATTTCGCTAAGCGTATGGATCAAGCTTGG 239
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 225 TCGGCGGTGGATTCACCTGAGAGTTCTTCAAATTTCGCCAAGCGTATGGATCAAGCTTGG 284
Query 240 ATTATCTCACAGCAACCAAGTCCTGTTGGATGTTCATCGTGCAATTCAAAGGGTCATGTT 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 ATTATCTCACAGCAACCAAGTCCTGTTGGATGTTCATCGTGCAATTCAAAGGGTCATGTG 344
Query 300 GAATGCAAATGGTGTGCGGGTACAGGATTCTTCATCCTCGGTGATAACATGCTTTGCCAG 359
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 345 GAATGCAAATGGTGTGCGGGTACAGGATTCTTCATCCTTGGTGATAACATGCTTTGCCAG 404
Query 360 GTACCCTCAAGGAATACTTCTTGCGTCATCTGCTCTGGACAGGGTTCTGCTAGCTGTAGC 419
|| ||||||||||||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 405 GTTCCCTCAAGGAATACTTCATGTGTAATCTGCTCTGGACAGGGTTCTGCTAGCTGTAGC 464
Query 420 GATTGCAAAGGAACGGGGTTTCGTGCCAAGTGGTTGGAAAAGCCTCCAGTGCCAACATAA 479
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 465 GATTGCAAAGGAACGGGGTTTCGTGCCAAGTGGTTGGAAAAACCTCCAGTGCCAACATAA 524
Query 480 CTGATGAACAAAAGCAAGTTAAGTTTTTTGGTCTTTGATGATTTCTTATGGAGCCAAATA 539
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
Sbjct 525 CTGATGAACAAAAGCAAGTTAAGCTTTTTGGTCTTTGATGATTTCTTATGGAGGAAAA-A 583
Query 540 TGTTTATAT-T-GATTCAAGTGGAATATGAAT 569
||||||||| | ||||||||||||| ||||||
Sbjct 584 TGTTTATATATTGATTCAAGTGGAACATGAAT 615
Score = 270 bits (146), Expect = 1e-71
Identities = 188/207 (91%), Gaps = 7/207 (3%)
Strand=Plus/Plus
Query 568 ATATGTATGTTCATTTATTCATTTCCCAC-TGTTCTGTTTGTACAACCAAAGG-CTACTC 625
||||||| ||||||||||||||||||| | |||||||| |||||||||||||| |||| |
Sbjct 654 ATATGTAAGTTCATTTATTCATTTCCC-CTTGTTCTGTCTGTACAACCAAAGGCCTACAC 712
Query 626 AAGAGTTCTTGTAATCAACACACGTGAGTTTTACGATTTCGATCATTAGAGTAGCTCCAC 685
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||
Sbjct 713 AAGAGTTCTTGTAATC--GACACGTGAGTTTTACGATTTCGATCATTGGAGTAGCTCAAC 770
Query 686 GGAAGAACATTAGTAGCACCGGATCGCCTTCGTATATCTTTTGATCTTTTCAT-GTGGTA 744
||||||||||||||||||| || || ||||||||| ||||||||| ||||| | || |||
Sbjct 771 GGAAGAACATTAGTAGCACAGGGTCACCTTCGTATTTCTTTTGATATTTTC-TCGTTGTA 829
Query 745 GGGTTAAATCATGTGCATCTTCCTTAC 771
|||||||||||||||||||||||||||
Sbjct 830 GGGTTAAATCATGTGCATCTTCCTTAC 856
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37524907809
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5