BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481347
Length=1183
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24950.1 | Symbols: | Protein of Unknown Function (DUF239) ... 1583 0.0
> AT2G24950.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr2:10613105-10615563 FORWARD LENGTH=1236
Length=1236
Score = 1583 bits (857), Expect = 0.0
Identities = 1095/1207 (91%), Gaps = 27/1207 (2%)
Strand=Plus/Plus
Query 1 TTTCACCCTAACTCTCTTCTTAACGAATATGAATTTAAGTTGTTGGAGGATGTTGTTATT 60
||| ||||||||||||||||||||||||||||| | |||||||||||||||||| ||||
Sbjct 33 TTTTACCCTAACTCTCTTCTTAACGAATATGAAAATGAGTTGTTGGAGGATGTTGCTATT 92
Query 61 CTTGTTGGGTTATATCTTGTATACTAATCGTTTTGTGGATGCTGAAATATTGCAAACTTT 120
|||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||
Sbjct 93 CTTGTTGGGTTATATCTTGTATTTTTATCGTTTTGTGGATGCTGAAATATTACAAACTTT 152
Query 121 CAGTGGTTTTAAAATTGAAGAGCAACTTAAAGTCGTCAACAAACCTGCTACGAAAATTAT 180
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 153 CAGTGATTTTGAAATTGAAGAGCAACTTAAAGTCGTCAACAAACCTGCTACGAAAATTAT 212
Query 181 CAAGACTATACATGGCGATTCATATGGA-TGTGTGGATTTTTACAGACAACCAGCGTTTG 239
||||||||||||||||||||||||| || || || |||||||||| |||||| |||||||
Sbjct 213 CAAGACTATACATGGCGATTCATAT-GATTGCGTAGATTTTTACAAACAACCCGCGTTTG 271
Query 240 ACCATCCGTCGATGAAAAATCACTTATTTCATTATGAAATGGGTCGGCCATCATCCTTAC 299
||||||| | |||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 272 ACCATCCATTGATGAAAAATCATTTATTTCATTACAAAATGCGTCGGCCATCATCCTTAC 331
Query 300 AAACTTCAAGAGCAAATAATGGAAAGTTTGGTTACTTGTGGAAAAATGGCATAGGATGTC 359
||| |||||||||| |||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 332 GAACCTCAAGAGCAAGTAATAGAAAGTTTGGTTACTTGTGGAAAAATGGCATAGGGTGTC 391
Query 360 CCATTGGTACCGTGCCTATAAAAACAATTGCTAAAG--G-----TT---A-T-AA---G- 403
| ||||||||||| |||||||||| ||||||||||| | || | | || |
Sbjct 392 CAATTGGTACCGTACCTATAAAAAAAATTGCTAAAGACGAACTCTTGAAATTAAATTTGT 451
Query 404 -C-CTAATAATTATAAGCCTAGAGGTTCTTGGAACTTCACTTATAATAAATATAATGTTG 461
| |||||| |||||| ||| |||||||||||||||| ||||||||| ||||||||||||
Sbjct 452 TCTCTAATAGTTATAACCCTCGAGGTTCTTGGAACTTTACTTATAATCAATATAATGTTG 511
Query 462 ATGGTAATCAACATCATTTTGCAGTGTCTCGTACCAAG-GGA-AA-AGGAAAAATCTATA 518
|| |||||||||||||||||||||||| ||||||||| || || ||| ||||| || |
Sbjct 512 ATAATAATCAACATCATTTTGCAGTGTCCCGTACCAAGAAGATAATAGGGAAAATTTACA 571
Query 519 ATGGAGCAACAATGATACTTTCTATAAATGATCCTAAAATTAAATCTTTACAATATAGTT 578
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 572 ATGGAGCAACAATGATACTTTCTATAAATGATCCTAAAGTTAAACCTTTACAATATAGTT 631
Query 579 CCGCTCGTATGCACGTTCAAATTGGAGATGATTTTATTCAAGCTGGGTGGACTGTAAATC 638
| ||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||
Sbjct 632 CTGCTCGTATGCACGTTCAAATTGGAGATGATTTTATTCAAGCAGGTTGGACTGTGAATC 691
Query 639 AAAAGTTGTATTCTGACAACAAGACTCGAAGTTATGTGTATACGAAAGTGGGTGAAAATC 698
||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||| |
Sbjct 692 AAAAGTTATATTCTGACAACAAGACTCGAAGTTATGTGTATACGAAAATTGGTGAAAACC 751
Query 699 AATGTTATAACAGCCTGTGTCCAGCTGGGATTATAGTGGTCAGTTCAGATATTTCTCTTG 758
|||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 752 AATGTTATAACAGCATGTGTCCAGCTGGGATTATAATGGTCAGTTCAGATATTGCTCTTG 811
Query 759 GTTTTTATTTAGGTCCTCCTAGTGTTCGTGGTTCAAGATC-AGGTGTCTATTCTGAATTT 817
|||| |||||||||||||| ||||||||||||||||| | | | |||| ||||||||||
Sbjct 812 GTTTGGATTTAGGTCCTCCTTGTGTTCGTGGTTCAAGAACAATG-GTCTCTTCTGAATTT 870
Query 818 GGTTTACTCAAGAATAAGGAAAATGGTAATTGGTGGCTCAAGTTAGGAGGACAAGAAATT 877
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 871 GGTTTACTCAAGAATAAGGAAAATGGTGATTGGTGGCTCAAGTTAGGAGGACAAGAAATT 930
Query 878 GGGTATTGGCCAGGAAAAAATTTTCAACAAAGTTTTGCCAACAATATCGAGTGGGGAGGA 937
||||||||||||| |||||| ||| || | | || |||||||||||||| |||||||||
Sbjct 931 GGGTATTGGCCAGCAAAAAAATTTAAAGAGACTTCGGCCAACAATATCGAATGGGGAGGA 990
Query 938 GAAGTATATAGTGCATCTTTACCGAGTCCTCAGATGGGGAATGGTTATTTTCCAGAAACG 997
|||||||||||||||| |||||||||||| |||||| |||||| | ||||||||||||||
Sbjct 991 GAAGTATATAGTGCATTTTTACCGAGTCCACAGATGAGGAATGATCATTTTCCAGAAACG 1050
Query 998 CATATAGAGTTTGATGCCGTCATCTTTAATATAACTATAGTCGACGAAAATTTTAAGAGT 1057
|||||||||| ||||||| |||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1051 CATATAGAGTATGATGCCATCATTTTTAATATAACTATAGTCGACGAAAATTTCAAGAGT 1110
Query 1058 GTTGAGCGGATAAAGAATAGAGAGGCATTTTCAGATAACACTCGTGGTTATAAAGTTTAT 1117
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1111 GTTGAGCGGATAAAGCATAGAGAGGCATTTTCGGATAACACTCGTGGTTATAAAGTATAT 1170
Query 1118 GATGATATAT-TCGTAGAATTACCGATAAGAAATGCCATATATTATGGGGGTCCAGGAAA 1176
|||||||| | | ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1171 GATGATATCTAT-GTAGAATTACCGATAAGAAATGCCATATATTATGGAGGTCCAGGGAA 1229
Query 1177 TATCTAA 1183
|||||||
Sbjct 1230 TATCTAA 1236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58082030565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5