BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg481350

Length=510
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G24970.1 | Symbols:  | unknown protein; Has 33 Blast hits to...   721    0.0  


> AT2G24970.1 | Symbols:  | unknown protein; Has 33 Blast hits 
to 33 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa 
- 1; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes 
- 4 (source: NCBI BLink). | chr2:10620118-10621307 REVERSE 
LENGTH=613
Length=613

 Score =  721 bits (390),  Expect = 0.0
 Identities = 460/494 (93%), Gaps = 3/494 (1%)
 Strand=Plus/Plus

Query  19   AGATGAGTCATAATCATCATCATCAAGCTGTTGATAATCTGATAAATGTTTTCGCGAGAG  78
            |||||| ||||||||||||||||||||||||||| |||||| ||||||||||| | ||||
Sbjct  56   AGATGACTCATAATCATCATCATCAAGCTGTTGACAATCTGCTAAATGTTTTCTCAAGAG  115

Query  79   CTTCTCATGATCTTACTATTGTCCATTCCAAGCTCGACAAGGAGTTTCAGCAGCTTTATC  138
            ||||||||||||||||| |||| |||||||||||||||||||||||||||||| | ||||
Sbjct  116  CTTCTCATGATCTTACTGTTGTTCATTCCAAGCTCGACAAGGAGTTTCAGCAGATGTATC  175

Query  139  CTGATAATGCGAATCCGATGAAGCTGATTCAGAGAATCAAGAAGTTGCAGGAAGATGTGA  198
            ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  176  CTGCTAATGCGAATCCGATGAAGCTGATTCAGCGAATCAAGAAGTTGCAGGAAGATGTGA  235

Query  199  CTCTTCTTAAAGACCAATGTCTTGACCTATTGTCCGCTAAACAGGATTTGATTGATAAGG  258
            ||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct  236  CTCTTCTTAAACACCAATGCCTTGACCTATTGTCTGCTAAACAGGATTTGATTGATAAGG  295

Query  259  CACAGACTACACTTGTTGGAAATTGCAACCTTATTCAGAAAATGAATGTATCTTTGGGAG  318
            |||||||||||||||||||||| || |||||||||||||||||||||| ||| || ||||
Sbjct  296  CACAGACTACACTTGTTGGAAACTGTAACCTTATTCAGAAAATGAATGCATCATTAGGAG  355

Query  319  AATCAACAAATGGTGAGGCCGATGATGCATTGGCTGATTTTAATCAGATCATCGACGAGT  378
            ||||||| ||||| ||  |||||||||||||||||||||||||||||||||| |||||||
Sbjct  356  AATCAACGAATGGCGATACCGATGATGCATTGGCTGATTTTAATCAGATCATTGACGAGT  415

Query  379  GGACAATGCAAGTTAGATCCAGAACAGTGGGAGAGATAGAGGAGGCAGATAAAGAAGACA  438
            |||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||
Sbjct  416  GGACAATGCAAGTTAGATCCAGAACAGTGGGAGAAACAGAGGACGCAGATAAAGAAGACA  475

Query  439  TCAATAAGATGCTTTTCTCAGCTATT-GTTCATACCAATTGAGGATGTTCAT-GTTTATG  496
            |||||||||||||||||||||||||| || |||||||||||| ||| ||||| ||| |||
Sbjct  476  TCAATAAGATGCTTTTCTCAGCTATTTGT-CATACCAATTGATGATATTCATTGTTCATG  534

Query  497  GTTATGTTCAGACC  510
            |||||||| |||||
Sbjct  535  GTTATGTTAAGACC  548



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24363561295


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5