BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481352
Length=1156
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25000.1 | Symbols: WRKY60, ATWRKY60 | WRKY DNA-binding prot... 1432 0.0
> AT2G25000.1 | Symbols: WRKY60, ATWRKY60 | WRKY DNA-binding protein
60 | chr2:10629737-10631413 FORWARD LENGTH=1209
Length=1209
Score = 1432 bits (775), Expect = 0.0
Identities = 1032/1149 (90%), Gaps = 45/1149 (4%)
Strand=Plus/Plus
Query 39 ATTTATGGACTATGATCCC-ACTACCAACCCTTTCGACCTTCATTTCTCCGGTAAACTTC 97
||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||
Sbjct 72 ATTTATGGACTATGATCCCAAC-ACCAATCCGTTCGACCTTCATTTCTCCGGTAAACTTC 130
Query 98 CGAAAAGAGAAGTCTCGGAC-TCAGCTTCTGTAGATGTAGAGAAGAAATGGTTAGTGAAA 156
|||||||||||||||||| | ||||||||| || |||||||||||||||||||||||||
Sbjct 131 CGAAAAGAGAAGTCTCGG-CTTCAGCTTCTAAAGTTGTAGAGAAGAAATGGTTAGTGAAA 189
Query 157 GATGAGAAGAGATATATGTTACAAGAGGAGATAAACCGGGTTAAATCGGAGAACATGAAG 216
|||||||||||| ||||| ||||||| || |||||||||||||| |||||||||| ||||
Sbjct 190 GATGAGAAGAGAAATATGCTACAAGATGAAATAAACCGGGTTAATTCGGAGAACAAGAAG 249
Query 217 CTAAACGAAATGTTAGCAATAGTCTGTGAGAAGTACTATGCTCTTAATAAGCTTTTGGAG 276
|||| |||||||||||||| |||||||||||||||||||||||||||||| ||| |||||
Sbjct 250 CTAACCGAAATGTTAGCAAGAGTCTGTGAGAAGTACTATGCTCTTAATAATCTTATGGAG 309
Query 277 GAGTTGCAGAGTCGAAAGAGTCCTGAAAATGTTAACTTTCAGAACAAACAGTTAACGGGG 336
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 310 GAGTTGCAGAGTCGAAAGAGTCCTGAAAGTGTTAACTTTCAGAACAAACAGCTAACGGGG 369
Query 337 AAACGAAAACAAGCGCGGGGTGACTTTGTTAGCTCCCCAATTGGACTCACTCTCGGAACT 396
||||||||||||| | | ||| ||||||||||||||||||||||||| ||||||| |
Sbjct 370 AAACGAAAACAAGAACTTGATGAGTTTGTTAGCTCCCCAATTGGACTCAGTCTCGGACCA 429
Query 397 ATCGAGAATATCACTACCGATAAAGCGACGGTTTCAACCGCCTACTTTGCTGCTGAGAAG 456
|||||||| ||||| | |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 430 ATCGAGAACATCACCAACGATAAAGCGACGGTTTCAACCGCTTACTTTGCTGCTGAGAAG 489
Query 457 TCTGACACAAGCTTGACTGTGAAAGATGGATATCAATGGAGGAAATACGGGCAAAAGATT 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 TCTGACACAAGCTTGACTGTGAAAGATGGATATCAATGGAGGAAATACGGGCAAAAGATT 549
Query 517 ACGAGAGATAATCCATCTCCTAGAGCTTACTTCAGATGTTCGTTTTCACCGTCTTGTCTA 576
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 550 ACGAGAGATAATCCATCTCCTAGAGCTTACTTCAGATGCTCGTTTTCACCGTCTTGTCTA 609
Query 577 GTCAAGAAGAAGGTTCAACGAAGCGCAGAAGATCCATCTTTCTTGGTAGCCACATACGAA 636
|||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 610 GTCAAGAAGAAGGTGCAACGAAGTGCAGAAGATCCATCTTTCTTGGTAGCCACTTACGAA 669
Query 637 GGGAGACATAACCACACCGGCCCACATGCAAGTGCGTCGAGGACAGTGAAACTTGATCTA 696
|||| ||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||
Sbjct 670 GGGACACATAACCACACCGGACCACATGCAAGTGTGTCCAGGACAGTGAAACTTGATCTA 729
Query 697 GTTCAAGGTGGTCTTGAACCAGTTGAGGAAAAGAAAGAGAGAGGAACGATTCAAGAGTTT 756
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 730 GTTCAAGGTGGGCTTGAACCAGTTGAGGAAAAGAAAGAGAGAGGGACGATTCAAGAGGTT 789
Query 757 TTGGTGCAACAAATGGCCTCTTCGTTGACCAAAGATCCTAAGTTCACTGCAGCTCTTGCG 816
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 TTGGTGCAACAAATGGCTTCTTCGTTGACCAAAGATCCTAAGTTCACTGCAGCTCTTGCG 849
Query 817 GCTGCTATTTCCGGGAGATTCATAGAGCATTCAAGAACATGAAACTTCTGTTGAACATGT 876
||||||||||||||||||| ||||||||||||||||||||||| |||| | ||||||||
Sbjct 850 ACTGCTATTTCCGGGAGATTGATAGAGCATTCAAGAACATGAAAGTTCTCTAGAACATGT 909
Query 877 ATATTTTTGTTTTGTTCTATTCTATTGCTCATCCCTAGTAAAA-G--A----T------- 922
|||||| |||||||||||||| | |||||||| |||||||||| | | |
Sbjct 910 ATATTTCTGTTTTGTTCTATTTTGTTGCTCATTCCTAGTAAAAAGGTAAAGATTTGTTTG 969
Query 923 --CTTGATTAGGTGGCATAGACGTCAAGTTTAATGTGTAT--ATA-AATTACATCAAATC 977
|||||||||| |||||||| ||||| |||||||||| | ||| ||||||||||||||
Sbjct 970 ATCTTGATTAGGAGGCATAGATGTCAATTTTAATGTGTGTGTATATAATTACATCAAATC 1029
Query 978 AAAGTATCCAAAAAGGACCACTGCGATTTT-TCTTTATGTC-AAAGGAGTTTTGTTATAG 1035
||||||||||||||| ||| | ||||| |||| |||| |||| |||||||||||||
Sbjct 1030 TAAGTATCCAAAAAGGGTCACCCCCATTTTATCTT-ATGTTGAAAG-AGTTTTGTTATAG 1087
Query 1036 CCCGGCT-TAAGAATGGTAGAC-G-CTAGCTGCTTCGACAGTT-ATGTTATGTCACTTTC 1091
| ||| | |||| |||||||| | | ||||||||||||||| |||| || | || |
Sbjct 1088 CTCGG-TGTAAGTATGGTAGATTGAC--GCTGCTTCGACAGTTTATGT-AT--C--TTCC 1139
Query 1092 AATTTTTTCTTGT--A-T-GTATGTGTTAACTTCCATTAGAGAAGAATATATGATGCCAT 1147
||| || |||||| | | || ||| |||||||||||||||||||||| | ||||||||
Sbjct 1140 AATGTTATCTTGTTCAGTTGTTTGTATTAACTTCCATTAGAGAAGAATGT--GATGCCAT 1197
Query 1148 TAAAGACAT 1156
|| ||||||
Sbjct 1198 TACAGACAT 1206
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56726615850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5