BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481360
Length=725
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25060.1 | Symbols: ENODL14, AtENODL14 | early nodulin-like ... 1027 0.0
AT4G31840.1 | Symbols: ENODL15, AtENODL15 | early nodulin-like ... 278 7e-74
> AT2G25060.1 | Symbols: ENODL14, AtENODL14 | early nodulin-like
protein 14 | chr2:10662241-10663103 FORWARD LENGTH=789
Length=789
Score = 1027 bits (556), Expect = 0.0
Identities = 657/704 (93%), Gaps = 13/704 (2%)
Strand=Plus/Plus
Query 27 CATCTATGGCTTCTCCTTCGCTT-ATCGTTTCTATCTTCTCCTTCATCTTCTTATTCTCT 85
|||||||||||||| |||| ||| | |||| |||||||||| || ||||||||||||||
Sbjct 81 CATCTATGGCTTCTTCTTCACTTCA-CGTTGCTATCTTCTCTTTAATCTTCTTATTCTCA 139
Query 86 CTCGCCGCTGCAAATGAAGTAACCGTCGGTGGAAAATCCGGTGACTGGAAGATCCCTCCT 145
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 140 CTCGCCGCTGCAAATGAAGTCACCGTCGGTGGAAAATCCGGCGACTGGAAGATCCCTCCT 199
Query 146 TCCTCTTCTTACTCATTCACCGAGTGGGCTCAAAAAGCTCGCTTCAAAGTCGGCGACTTT 205
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 200 TCCTCTTCTTACTCATTCACTGAGTGGGCTCAAAAAGCTCGCTTCAAAGTCGGCGACTTT 259
Query 206 ATTGTTTTCCGGTACGAATCTGGTAAAGACTCGGTTTTGGAAGTAACTAAAGAAGCTTAC 265
|||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 260 ATTGTTTTCCGGTATGAATCTGGTAAAGACTCTGTTTTGGAAGTAACAAAAGAAGCTTAC 319
Query 266 AACAGCTGCAACACCACGAACCCTTTGGCTAACTACACAGATGGAGAAACCAAAGTGAAA 325
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 320 AACAGCTGCAACACCACGAACCCTTTGGCTAACTACACTGATGGAGAAACCAAGGTGAAA 379
Query 326 TTAGACCGTTCTGGTCCATTCTACTTCATTAGTGGAGCTAATGGTCACTGTGAGAAAGGT 385
|| ||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 TTGGACAGGTCTGGTCCTTTCTACTTCATTAGTGGAGCTAATGGTCACTGTGAGAAAGGT 439
Query 386 CAGAAGCTGAGCCTCGTCGTGATCAGTCCTCGTCACAGTGTCATCTCTCCGGCTCCTTCT 445
|||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||
Sbjct 440 CAGAAGCTGAGCCTTGTTGTGATCAGTCCTCGTCACAGTGTCATCTCTCCAGCTCCTTCT 499
Query 446 CCGGTTGAGTTTGAAGATGGTCCAGCTTTGGCTCCAGCTCCAACCAGTGGCTCAGTTAGG 505
|||||||| || ||||||||||||||||||||||||||||| | || ||||||||||||
Sbjct 500 CCGGTTGAATTCGAAGATGGTCCAGCTTTGGCTCCAGCTCCCATTAGCGGCTCAGTTAGG 559
Query 506 CATGGTGGTGGTCTATATGTTGTGTTAGGTCTTGTTCTTGGTCTAT-TGGCTTGGTTCTG 564
| ||||||| || ||| |||||||||||||||||||||||||||| || ||||||||||
Sbjct 560 CTTGGTGGTTGT-TAT--GTTGTGTTAGGTCTTGTTCTTGGTCTATGTG-CTTGGTTCTG 615
Query 565 ATTTGGAACCATGTGATGAGtttgctttttagaatgagcttttttgttttaaaaagcttt 624
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 616 ATTTGGAACCATGTGATGAGTTTGCTTTTTAGAATGAGCTTTTT-GTTTCAAAAAGCTTT 674
Query 625 tttttttAAATGATTACATGCTGTGTTGTT-T-AGCTAAGAGATCTTTGTC-TTTGGCTC 681
||| ||| |||||||||| ||||||||| | |||||||||||||||||| ||||||||
Sbjct 675 CTTTCTTA--TGATTACATGTTGTGTTGTTGTTAGCTAAGAGATCTTTGTCCTTTGGCTC 732
Query 682 CTTGCTACTATTTTATTATAAATTCAATTTATTATTATTTCTCA 725
|||||||||||||| |||||||||||||||||||||||||||||
Sbjct 733 CTTGCTACTATTTTGTTATAAATTCAATTTATTATTATTTCTCA 776
> AT4G31840.1 | Symbols: ENODL15, AtENODL15 | early nodulin-like
protein 15 | chr4:15401640-15402617 FORWARD LENGTH=883
Length=883
Score = 278 bits (150), Expect = 7e-74
Identities = 344/434 (79%), Gaps = 28/434 (6%)
Strand=Plus/Plus
Query 28 ATCTATGGCTTCTCCTTCGCTTATCGTTTCTATCTT-CTCCTTCA--TCT-TCTTATTCT 83
||| ||||||||| |||| ||| | || | ||||| || || || ||| |||| ||||
Sbjct 155 ATCAATGGCTTCTTCTTCTCTTTTGGTCACCATCTTCCT-CTGCATCTCTGTCTTCTTCT 213
Query 84 CTCTCG-CC--G-CTGCAAATGAAGTAACCGTCGGTGGAAAATCCGGTGACTGGAAGATC 139
| ||| || | ||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 214 -TTTCGTCCGTGAATGCAAATGAGGTTACCGTCGGTGGAAAATCCGGTGACTGGAAGATC 272
Query 140 CCTCCTTCCTCTTCTTACTCATTCACCGAGTGGGCTCAAAAAGCTCGCTTCAAAGTCGGC 199
|||||||||||||||| ||| || | ||| ||||||||||| ||||||||||||||||||
Sbjct 273 CCTCCTTCCTCTTCTTTCTCCTTTAACGAATGGGCTCAAAAGGCTCGCTTCAAAGTCGGC 332
Query 200 GACTTTATTGTTTTCCGGTACGAATCTGGTAAAGACTCGGTTTTGGAAGTAACTAA-AGA 258
|||||||| || ||| ||||||| | |||||||||||||||||| |||| || | |||
Sbjct 333 GACTTTATCGTATTCAAGTACGAAGCCGGTAAAGACTCGGTTTTGCAAGTGAC-ACGAGA 391
Query 259 AGCTTACAACAGCTGCAACACCACGAACCCTTTGGCTAACTACACAGATGGAGAA-ACCA 317
||| ||| | | ||||||||||| | |||| || | |||||| || || ||| || |
Sbjct 392 AGCATACGAGAAATGCAACACCACTAGCCCTAAAGCCAGCTACACCGACGG-GAACAC-A 449
Query 318 AAG-TGAAA-TTAGACCGTTCTGGTCCATTCTACTTCATTAGTGGAGCTA-ATGGTCACT 374
||| |||| || |||| ||||||| |||||||| | |||||| | | | ||||| |
Sbjct 450 AAGGTGAAGCTT-GACCAAGCTGGTCCGGTCTACTTCGTCAGTGGAAC-AGAGGGTCATT 507
Query 375 GTGAGAAAGG-TCAGAAGCTGA-GCCTCGTCGTGATCAGTCCTCGTCACAGTGTCAT-CT 431
|| | ||||| ||||||||| | |||| ||||| |||| ||||||| || || | | ||
Sbjct 508 GTCA-AAAGGGTCAGAAGCT-ACGCCTAGTCGTCATCACTCCTCGTAACTCTG-CTTTCT 564
Query 432 CTCC-GGCTCCTTC 444
|||| || ||||||
Sbjct 565 CTCCAGG-TCCTTC 577
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35163902900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5