BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481363
Length=1510
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25090.1 | Symbols: CIPK16, SnRK3.18 | CBL-interacting prote... 2211 0.0
AT1G08650.1 | Symbols: PPCK1, ATPPCK1 | phosphoenolpyruvate car... 58.4 2e-07
> AT2G25090.1 | Symbols: CIPK16, SnRK3.18 | CBL-interacting protein
kinase 16 | chr2:10670467-10672653 REVERSE LENGTH=1528
Length=1528
Score = 2211 bits (1197), Expect = 0.0
Identities = 1412/1515 (93%), Gaps = 17/1515 (1%)
Strand=Plus/Plus
Query 1 ATATACTTGTAACTAGTCAGACAAAGTCTAGAGACAATGGAAGAATCAAACC---GTAGT 57
|||||||||||||||||||||| | | ||||||||||||||||||||| |||||
Sbjct 15 ATATACTTGTAACTAGTCAGAC--A----A-AGACAATGGAAGAATCAAACCGTAGTAGT 67
Query 58 ACTGTCTTGTTCGACAAATACAACATCGGAAGACTTCTCGGTACCGGTAACTTCGCGAAA 117
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 68 ACTGTCTTGTTCGACAAATACAACATCGGAAGACTTCTCGGAACCGGTAACTTCGCCAAA 127
Query 118 GTCTATCACGGAACAGAGATCTCCACCGGTGATGACGTGGCAATCAAGGTCATCAAAAAA 177
|| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 128 GTGTATCACGGAACAGAGATCTCCACCGGCGATGACGTGGCAATCAAAGTCATCAAAAAA 187
Query 178 GACCATGCATTCAGACGTCGTGGCATGATGGAGCAAATCGAACGAGAGATCGCCGTCATG 237
||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 GACCACGTTTTCAAACGTCGTGGCATGATGGAGCAAATCGAACGAGAGATCGCCGTCATG 247
Query 238 CGTCTCCTCCGTCATCCAAACGTCGTCGAGCTCCGTGAAGTGATGGCAACAAAGAAAAAG 297
||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||| |||
Sbjct 248 CGTCTCCTCCGTCATCCAAACGTGGTCGAGCTCCGCGAAGTAATGGCTACAAAGAAGAAG 307
Query 298 ATCTTCTTCGTCATGGAGTATGTCAACGGCGGCGAGCTCTTCGAGATGATCGAAAGAGAT 357
|| ||||||||||||||||| ||||||||||| ||||| ||||| |||||||| ||||||
Sbjct 308 ATTTTCTTCGTCATGGAGTACGTCAACGGCGGAGAGCTTTTCGAAATGATCGATAGAGAT 367
Query 358 GGGCAGCTCCCGGAGGATCTAGCCCGAAAATATTTCCAACAATTAATATCCGCGGTGGAT 417
||| |||||||||||||||||||| |||| |||||||||||||| |||||||||||||||
Sbjct 368 GGGAAGCTCCCGGAGGATCTAGCCAGAAAGTATTTCCAACAATTGATATCCGCGGTGGAT 427
Query 418 TTTTGCCACAGCCGCGGTGTTTTCCACCGCGATATTAAGCCGGAGAATCTGTTGCTTGAC 477
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 428 TTTTGCCACAGCCGCGGTGTTTTCCACCGCGATATTAAACCCGAGAATCTGTTGCTTGAC 487
Query 478 GGAGAAGGCGATCTTAAGGTGACGGATTTTGGACTTTCGGCGTTGATGATGCCAGAAGGG 537
|||||||| ||||||||||| |||||||| |||||||| || ||||||||||||||||||
Sbjct 488 GGAGAAGGTGATCTTAAGGTAACGGATTTCGGACTTTCCGCATTGATGATGCCAGAAGGG 547
Query 538 CTAGGTGGCAGGCGTGGTAGTAGCGATGATCTTTTACATACGCGGTGCGGGACGCCGTAT 597
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
Sbjct 548 CTAGGTGGCAGGCGTGGTAGCAGCGATGATCTTTTACATACGCGGTGCGGGACACCGGCT 607
Query 598 TACGTGGCGCCGGAGGTTTTACGGAATAAAGGATACGACGGAGCTATGGCTGATATTTGG 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 TACGTGGCGCCGGAGGTTTTACGGAATAAAGGATACGACGGAGCTATGGCTGATATTTGG 667
Query 658 TCGTGCGGGATTGTTTTGTATGCACTCCTTGCTGGCTTCTTGCCGTTTATCGACGAAAAT 717
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 TCGTGCGGGATTGTTTTGTATGCACTCCTTGCTGGCTTCTTGCCGTTTATCGACGAAAAC 727
Query 718 GTCATGACCTTGTACACGAAGATCTTCAAGGCGGAATGCGAGTTCCCACCGTGGTTTTCC 777
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 GTCATGACATTGTACACGAAGATCTTCAAGGCGGAATGCGAGTTCCCACCGTGGTTTTCC 787
Query 778 TTAGAGTCCAAGGAACTACTCTCAAGATTGCTTGTGCCAGATCCTGAACAACGAATTTCA 837
||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 788 TTAGAATCCAAGGAACTACTCTCAAGATTGCTTGTGCCGGATCCTGAACAAAGAATTTCA 847
Query 838 ATGTCGGAGATCAAAATGATTCCATGGTTCCGAAAGAACTTTACACCGCCGGTAGCCTTT 897
||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 848 ATGTCAGAGATCAAAATGATTCCATGGTTCCGAAAGAACTTTACACCATCAGTAGCCTTT 907
Query 898 TCGATAGACGAAACGATCCCATCTCCACCAGAGCCACCAGCAAAGAAAAAGAAGAAAGAC 957
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 908 TCGATAGACGAAACGATCCCATCTCCACCGGAGCCACCAACAAAGAAAAAGAAGAAAGAC 967
Query 958 CTAAACAAGGAGGAAGACGACGGAG-TGTCTCCAAGATCCTTCAACGCATTTCAATTCAT 1016
|||||| || | ||||||||||||| | || ||||||||||||||||| || ||||||||
Sbjct 968 CTAAACGAGAAAGAAGACGACGGAGCT-TCACCAAGATCCTTCAACGCCTTCCAATTCAT 1026
Query 1017 CACATCAATGTCTTCTGGTTTTGACCTCTCTAACCTATTCGAGATAAAACGGAAGCCAAA 1076
||||||||||||||| ||||| || |||||||||||||||||||||||||| ||||||||
Sbjct 1027 CACATCAATGTCTTCAGGTTTCGATCTCTCTAACCTATTCGAGATAAAACGAAAGCCAAA 1086
Query 1077 GCGGATGTTCACATCGAAGTTGCCCG-CGAAATCTGTTAAGGAGAGGCTAGAGACGGCGG 1135
||||||||||||||||||||| |||| ||||||||||||| |||||||| ||||||||||
Sbjct 1087 GCGGATGTTCACATCGAAGTT-CCCGGCGAAATCTGTTAAAGAGAGGCTGGAGACGGCGG 1145
Query 1136 CGCGTGAGATGAACATGAGAGTGAAACATGTAAAAGACTGCAAGATGAAGCTACAAAGAA 1195
||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1146 CGCGTGAGATGGATATGAGAGTGAAACATGTAAAAGACTGCAAGATGAAGCTGCAAAGAA 1205
Query 1196 GAACAGAAGGCCGCAAAGGGAGGCTCTCAGTGACGGCGGAAGTTTTCGAAGTCGCTCCTG 1255
|||||||||| || ||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct 1206 GAACAGAAGGTCGTAAAGGAAGGCTCTCGGTGACGGCGGAAGTATTCGAAGTCGCTCCTG 1265
Query 1256 AAGTCTCTGTTGTCGAGTTCTGCAAATCCTCCGGCGATACATTGGAGTATTACCTCTTCT 1315
|||||||||| || |||||||||||| |||| || ||||| |||||||||||||||||||
Sbjct 1266 AAGTCTCTGTCGTGGAGTTCTGCAAAACCTCGGGGGATACGTTGGAGTATTACCTCTTCT 1325
Query 1316 GTGAGGATGACGTCAGGCCAGCTCTTAAAGACATTGTATGGTCATGGCAAGGTGATGATG 1375
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 GTGAGGATGACGTCAGACCAGCTCTTAAAGACATTGTATGGTCATGGCAAGGTGATGATG 1385
Query 1376 ATGAAGACGACGTTACCACTAATGATAATGTTAACACTAATGATAACAAAATAACTAATA 1435
|||||||||| ||||||||||||||||||||| |||| |||||||||||||||| ||||
Sbjct 1386 ATGAAGACGATGTTACCACTAATGATAATGTTGACACAAATGATAACAAAATAAATAATG 1445
Query 1436 TTTCATGAGCTGTAATATTTAAAtttttttttAATTGGATGTGCAAGAGCGAGACTATCT 1495
||||||||||||||||| || | ||||| |||||||||||| || |||||||| |||
Sbjct 1446 TTTCATGAGCTGTAATAATTCACTTTTTGG--AATTGGATGTGCGAG-GCGAGACTGTCT 1502
Query 1496 TATAGTGAAATTGCA 1510
||| |||||||||||
Sbjct 1503 TATTGTGAAATTGCA 1517
> AT1G08650.1 | Symbols: PPCK1, ATPPCK1 | phosphoenolpyruvate carboxylase
kinase 1 | chr1:2752156-2753703 FORWARD LENGTH=1376
Length=1376
Score = 58.4 bits (31), Expect = 2e-07
Identities = 33/34 (97%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 585 CGGGACGCCGTATTACGTGGCGCCGGAGGTTTTA 618
||| ||||||||||||||||||||||||||||||
Sbjct 578 CGGAACGCCGTATTACGTGGCGCCGGAGGTTTTA 611
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74497608780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5