BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481375
Length=1992
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25180.1 | Symbols: ARR12, RR12 | response regulator 12 | ch... 2665 0.0
AT4G31920.1 | Symbols: ARR10, RR10 | response regulator 10 | ch... 424 2e-117
> AT2G25180.1 | Symbols: ARR12, RR12 | response regulator 12 |
chr2:10724301-10726961 REVERSE LENGTH=1980
Length=1980
Score = 2665 bits (1443), Expect = 0.0
Identities = 1826/2000 (91%), Gaps = 69/2000 (3%)
Strand=Plus/Plus
Query 1 ATGACTGTGGAACAAAATTTTGAAGCTTTGGATCAGTTTCCTGTAGGAATGAGAGTTCTT 60
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACTGTTGAACAAAATTTAGAAGCTTTGGATCAGTTTCCTGTAGGAATGAGAGTTCTT 60
Query 61 GCTGTTGATGATGACCAAACTTGTCTCAAAATCCTTGAAACTCTTCTTCGTCTCTGCCAA 120
||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||
Sbjct 61 GCTGTTGATGATGACCAAACTTGTCTCAAAATCCTTGAATCTCTCCTTCGTCACTGCCAA 120
Query 121 TACCATGTTACAACGACGAACCAAGCACAAAAGGCTTTAGAGTTATTGAGAGAGAACAAG 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TACCATGTAACAACGACGAACCAAGCACAAAAGGCTTTAGAGTTATTGAGAGAGAACAAG 180
Query 181 AACAAGTTTGATCTTGTTATTAGCGATGTCGACATGCCTGACATGGATGGTTTCAAACTT 240
|||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 181 AACAAGTTTGATCTGGTTATTAGTGATGTTGACATGCCTGACATGGATGGTTTCAAACTC 240
Query 241 CTTGAGCTTGTTGGTCTTGAAATGGACCTACCTGTCATAATGTTGTCTGCTCATAGTGAT 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 CTTGAGCTTGTTGGTCTTGAAATGGACCTACCTGTCATAATGTTGTCTGCGCATAGTGAT 300
Query 301 CCAAAGTATGTGATGAAAGGAGTTACCCATGGTGCTTGTGACTATTTGTTGAAGCCGGTT 360
||||||||||||||||| |||||||| |||||||||||||| ||| | |||||||||||
Sbjct 301 CCAAAGTATGTGATGAAGGGAGTTACTCATGGTGCTTGTGATTATCTACTGAAGCCGGTT 360
Query 361 CGTATTGAGGAGCTGAAGAACATATGGCAACATGTGGTGAGAAGTAGATTTGATAAGAAC 420
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 CGTATTGAGGAGTTGAAGAACATATGGCAACATGTCGTGAGAAGTAGATTTGATAAGAAC 420
Query 421 CGTGGGAG---TAATAACGGTGACAAGAGAGATGGATCGGGTAATGAAGGTGTTGGAAAT 477
|||||||| |||||| ||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 421 CGTGGGAGTAATAATAATGGTGATAAGAGAGATGGATCAGGTAATGAAGGTGTTGGGAAT 480
Query 478 TCTGATCAGAACAATGGGAGAGCTAATAGAAAACGTAAAGATCAGTATAATGAAGAGGAT 537
||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||
Sbjct 481 TCTGATCAGAACAATGGGAAAGGTAATAGAAAACGTAAAGATCAGTATAATGAAGATGAG 540
Query 538 GATGAGGAAAGAGATGATAACGATGATTCGTCG-GCTCAAAAGAAGCAACGTGTTGTTTG 596
|||||||| ||||||||||| |||||||||| | ||||||||||||||||||||||||||
Sbjct 541 GATGAGGATAGAGATGATAATGATGATTCGT-GTGCTCAAAAGAAGCAACGTGTTGTTTG 599
Query 597 GACCGTCGAGCTGCATAAGAAATTTGTTGCAGCGGTTAACCAATTGGGATATGAGAAGGC 656
||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 600 GACTGTTGAGCTGCATAAGAAATTTGTTGCAGCTGTTAACCAATTGGGATATGAGAAGGC 659
Query 657 TATGCCTAAAAAGATTTTGGATCTGATGAATGTTGAGAAGCTCACTAGAGAAAATGTGGC 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TATGCCTAAAAAGATTTTGGATCTGATGAATGTTGAGAAGCTCACTAGAGAAAATGTGGC 719
Query 717 TAGTCATCTTCAGAAATTCCGCCTTTACTTGAAGAGGATCAGCGGTGTGGCTAATCAACA 776
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 720 CAGTCATCTTCAGAAATTCCGCCTTTACTTGAAGAGGATCAGTGGTGTGGCTAATCAGCA 779
Query 777 AGCTATTATGGCAAACCCTGATTTACATTTTTTGCAAATGAGTTCTTCTCACAATGGACT 836
|||||||||||||||| |||| ||||||||| ||||||||| | ||||||
Sbjct 780 AGCTATTATGGCAAACTCTGAGTTACATTTTATGCAAATGA---------A---TGGACT 827
Query 837 TGACGGTTTCAACCACCGCCCAATCCCTGTTGGATCTGGTCAGTTCCATGGTGGGGCTCC 896
||| |||||| | ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 828 TGATGGTTTCCATCACCGCCCAATCCCTGTTGGATCTGGTCAGTACCATGGTGGGGCTCC 887
Query 897 TGCAATGAGATCTTTCCCTCCAAATGGGATTCTTGGCCGACTCAATACTCCTTCGGGGAT 956
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 888 TGCAATGAGATCTTTCCCTCCAAACGGGATTCTTGGCAGACTCAATACTCCTTCGGGGAT 947
Query 957 CGGTGTCCACAACCTTTCTTCTCCTCCTGCAGGAATGTTCTTGCAAAACCAGACCGATCT 1016
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 948 CGGTGTCCGCAGCCTTTCTTCTCCTCCTGCAGGAATGTTCTTGCAAAACCAGACCGATAT 1007
Query 1017 CGGAAAGTTACACCATGTCTCATCACTTCCTCTTAACCACAATGATGGAGGAAACATACT 1076
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1008 CGGAAAGTTTCACCATGTCTCATCACTTCCTCTTAACCACAGTGATGGAGGAAACATACT 1067
Query 1077 TCCAGGGTTGCCACTGCCTTTAGAGTTCGACCAGCTTTATacaaacaacaacaacaacaa 1136
|| |||||||||| ||||||||||||||||||||||| || |||| | |||||||||
Sbjct 1068 TCAAGGGTTGCCAATGCCTTTAGAGTTCGACCAGCTT----CAGACAA-A-CAACAACAA 1121
Query 1137 caacaacattagaaacatgaacaataacaaGAGCATCGCCGGGACTTCCATGGCTTTTCC 1196
|| | ||||||||||||| |||||||||||| || ||||| ||||||||||||||
Sbjct 1122 -AAG----T-AGAAACATGAACAGTAACAAGAGCATTGCTGGGACCTCCATGGCTTTTCC 1175
Query 1197 TAGCTTCTCTACACAACAGAACTCGATCATCGGTGCTCCTAATAACAATCTCGTGGTTCT 1256
|||||||||||| ||||| |||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 1176 TAGCTTCTCTACGCAACAAAACTCGCTCATCAGTGCTCCTAATAACAATGTCGTGGTTCT 1235
Query 1257 AGAAGGTCATCCACAATCATCTCCTCCAGGCTTCCCGGGACACCAGATCAATAAACGTTT 1316
||||||||| |||||| || |||||||||||||||| |||||||||||||||||||||||
Sbjct 1236 AGAAGGTCACCCACAAGCAACTCCTCCAGGCTTCCCAGGACACCAGATCAATAAACGTTT 1295
Query 1317 GGAGCATTGGTCAAACGCTGTATCCTCATCGACTCTTCCTCCTCCTGC--C-CAGAACAG 1373
||||||||||||||| ||||||||||| ||||||| |||||||| | | || |||||
Sbjct 1296 GGAGCATTGGTCAAATGCTGTATCCTCTTCGACTCACCCTCCTCCCCCGGCACATAACAG 1355
Query 1374 TAATAGTATCAATCATCAGTTTGATGTCTCTCCATTACCGCATTCTAGACCCGACACTTT 1433
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||
Sbjct 1356 TAATAGTATCAATCATCAGTTCGATGTCTCTCCATTACCGCATTCTAGACCCGACCCCTT 1415
Query 1434 GGAATGGAACAATGTGTCATCAAGCTACTCTATACCATTCTGTGACTCTGCCACTACATT 1493
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1416 GGAATGGAACAATGTGTCATCAAGCTACTCTATACCATTCTGTGACTCTGCCAATACATT 1475
Query 1494 GAGTCCTCCTGCCTTGGATACAACAAATCCCCGAGCTTTCTGCAGAAACACGGACTTCGA 1553
|||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1476 GAGTTCTCCAGCCTTGGATACAACAAATCCCCGAGCTTTCTGTAGAAACACGGACTTCGA 1535
Query 1554 TTCAAGCACAAATGCGCAACCTGGAGGCTTTTATGATACCTTGCAGACTCGGCAATCAGG 1613
||||| |||||||| ||||||||||| |||||||| | || | || | || | | |
Sbjct 1536 TTCAAACACAAATGTGCAACCTGGAGTCTTTTATGGT-CCATCCA--C--GG-A-T--G- 1585
Query 1614 CAATTATTGTCCAACCACGGATGCTATGTTGAGTAGTAGTAACCCGAAAGAAGGGTTCGT 1673
| | || | | | || | || |||||||||||||||||||||||||||||
Sbjct 1586 C--T-ATGG-CT--C------TG-T-TG---AGTAGTAGTAACCCGAAAGAAGGGTTCGT 1628
Query 1674 TGTAGGACAGCAGAAGTTACAGAGTGGTGGATTCATGAGT-GCAGAAGCTGGTTCCTTAG 1732
||||| || ||||||||||||||||||||||||||| || ||||| |||||||||||||
Sbjct 1629 CGTAGGCCAACAGAAGTTACAGAGTGGTGGATTCATG-GTTGCAGATGCTGGTTCCTTAG 1687
Query 1733 ATGATATAGTCAACTCCACAATGAAGCAGGAACAGAGCCAGGGAGATTTGTCTGGAGGAG 1792
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1688 ATGATATAGTCAACTCCACGATGAAGCAGGAACAGAGCCAGGGAGATTTGTCTGGAGGAG 1747
Query 1793 ATTTGGGTTATGGAGGCTTTAGTTCACTCAGAACATGCATATGAGAGAGAACAAACATTT 1852
||||||| |||||||| ||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1748 ATTTGGGATATGGAGGGTTTAGTTCACTCAGAACATGCATATGAGAGA-A-CAAACATTT 1805
Query 1853 AGACATAAATCAAATATCATCATCTTGTGATTGCTTTTGTCTTTTTCTTTCTTATCTTTT 1912
|||||||||||||||||||||||||||| ||| | | |||||||| || |||||||
Sbjct 1806 AGACATAAATCAAATATCATCATCTTGT--TTG-TCT---CTTTTTCTCGCTAATCTTTT 1859
Query 1913 GTGTATTGAAACTGTAAACTATTTGTTTTCCCACTGGTTCTAGCAATTTAGGACTTCATA 1972
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1860 GTGTATTAAAATTGTAAACTATTTGTTTTCCCACTGGTTCTAGCAATTTAGGACTCCATT 1919
Query 1973 AAAGAAAATAATAAAGAAAA 1992
|||||||| || ||||||||
Sbjct 1920 AAAGAAAACAACAAAGAAAA 1939
> AT4G31920.1 | Symbols: ARR10, RR10 | response regulator 10 |
chr4:15444117-15446959 REVERSE LENGTH=2025
Length=2025
Score = 424 bits (229), Expect = 2e-117
Identities = 350/408 (86%), Gaps = 10/408 (2%)
Strand=Plus/Plus
Query 1 ATGACTGTGGAACAA-AATTTTGAAGCT-TTGGATCAGTTTCCTGTAGGAATGAGAGTTC 58
|||||| |||| ||| || |||||| | ||||| |||||||| || || ||||||||||
Sbjct 194 ATGACTATGGAGCAAGAA-ATTGAAG-TCTTGGACCAGTTTCCGGTTGGGATGAGAGTTC 251
Query 59 TTGCTGTTGATGATGACCAAACTTGTCTCAAAATCCTTGAAACTCTT-CTTC-GTCTCTG 116
|||||||||| |||||||| ||||||||| || || | ||| || |||| | | |||
Sbjct 252 TTGCTGTTGACGATGACCAGACTTGTCTCCGTATTCTCCAGACT-TTGCTTCAG-CGCTG 309
Query 117 CCAATACCATGTTACAACGACGAACCAAGCACAAAAGGCTTTAGAGTTATTGAGAGAGAA 176
|||||| || |||||||| ||||| || ||||| | || || ||||| ||||| |||||
Sbjct 310 CCAATATCACGTTACAACAACGAATCAGGCACAGACCGCATTGGAGTTGTTGAGGGAGAA 369
Query 177 CAAGAACAAGTTTGATCTTGTTATTAGCGATGTCGACATGCCTGACATGGATGGTTTCAA 236
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 370 CAAGAATAAGTTTGATCTTGTTATTAGCGATGTCGACATGCCAGACATGGATGGTTTCAA 429
Query 237 ACTTCTTGAGCTTGTTGGTCTTGAAATGGACCTACCTGTCATAATGTTGTCTGCTCATAG 296
|| ||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||
Sbjct 430 GCTGCTTGAGCTTGTTGGTCTTGAAATGGACTTACCTGTCATAATGTTATCTGCGCATAG 489
Query 297 TGATCCAAAGTATGTGATGAAAGGAGTTACCCATGGTGCTTGTGACTATTTG-TTGAAGC 355
|||||||||||||||||||||||||| | || ||||| ||||| ||| || || || |
Sbjct 490 CGATCCAAAGTATGTGATGAAAGGAGTCAAGCACGGTGCCTGTGATTATCTGCTTAAA-C 548
Query 356 CGGTTCGTATTGAGGAGCTGAAGAACATATGGCAACATGTGGTGAGAA 403
||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct 549 CGGTTCGAATTGAGGAGCTTAAGAACATATGGCAACATGTTGTGAGAA 596
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98694271470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5