BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481378
Length=1170
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25200.1 | Symbols: | Plant protein of unknown function (DU... 1598 0.0
> AT2G25200.1 | Symbols: | Plant protein of unknown function (DUF868)
| chr2:10736483-10737654 REVERSE LENGTH=1172
Length=1172
Score = 1598 bits (865), Expect = 0.0
Identities = 1075/1177 (91%), Gaps = 12/1177 (1%)
Strand=Plus/Plus
Query 1 ATACCTAAAAATGAAAATCTCTGCTCTTGGTCGCGGTGGTTCCTCTCCTTTATCAGCCTG 60
||||||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||
Sbjct 1 ATACCTAAAAATGAAAATCTCTGCTCTTGGTCGCGGTGGCTCCTCCCCTTTGTCCGCCTG 60
Query 61 TTTCCACCCTTCCGCCACCGCCATCAACGACGATCTACCGTCTTCTCTTCCATCACCGTC 120
|||||| ||||||||||||||||||||||||||||||||||| |||||||||| || ||
Sbjct 61 TTTCCATCCTTCCGCCACCGCCATCAACGACGATCTACCGTCGGCTCTTCCATCCCCATC 120
Query 121 AAATCCATCGTATAGCTCCGCCTCCGGCGACCCTACCGCAACATGTCATTACCACACTAA 180
|||||||||||||| |||| ||||||||||| ||||| |||| ||||| |||||||||||
Sbjct 121 AAATCCATCGTATATCTCCACCTCCGGCGACGCTACCACAACTTGTCAGTACCACACTAA 180
Query 181 CGTTGGTGTTTTCTTTCTTTCATGGTCTCAATCCTTCCTCCGCCGCTCTCTCCACCTTCA 240
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 181 CGTTGGTGTTTTCTTTCTTTCATGGTCTCGATCCTTCCTCCGACGCTCTCTCCACCTTCA 240
Query 241 TTTCTACTCATGCAACTCCACAAATTGTTATCTCCACTCTCCGGAATGTTACCGTCACTC 300
||||||||||||||||||||||||||| ||||| ||||||| || ||||||||||||||
Sbjct 241 TTTCTACTCATGCAACTCCACAAATTGCTATCTACACTCTCTAGATTGTTACCGTCACTC 300
Query 301 CATTCCTTTCGCTTTCCGGCTCGAAATCAAGCCCTTGACCTTTTGGAGAAAACAA-GGGT 359
|||||| ||||| ||||||||||||||||| |||||||| || ||||||||| || || |
Sbjct 301 CATTCCCTTCGCCTTCCGGCTCGAAATCAAACCCTTGACATTCTGGAGAAAA-AATGGAT 359
Query 360 CCAAGAAGATATCTCGAAAGCCGGATATTCGGGTCGTATGGGACCTAACTCACGCAAGAT 419
| |||||| ||||||||||||||||||||||||| ||||||||||| |||||||||| ||
Sbjct 360 CAAAGAAGTTATCTCGAAAGCCGGATATTCGGGTGGTATGGGACCTGACTCACGCAAAAT 419
Query 420 TTGGATCAGGACCTGACCCGGAATCCGGGTTTTACGTGGCTGTCTTTGTATCCGGCGAAG 479
||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 420 TTGGATCAGGACCCGATCCGGAATCCGGGTTTTACGTGGCAGTCTTTGTATCCGGCGAAG 479
Query 480 TGGGTCTTCTCATCGGCGAAGGAAACTTGAAACAAAGGCCTAGAAGACAAATCTTGGTGT 539
| |||||||| |||| | ||||||||||||||| || || || ||||||||||||||||
Sbjct 480 TAGGTCTTCTTGTCGGTGGAGGAAACTTGAAACAGAGACCGAGGAGACAAATCTTGGTGT 539
Query 540 CCAAGAAAGAGAATCTGTTTGGAAACAGAGTTTACTCTACGAAAATCAAGATTCAAGGAA 599
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 540 CCAAGAAAGAGAATCTGTTTGGAAACAGAGTTTACTCTACGAAAATCATGATTCAAGGAA 599
Query 600 AACTAAGAGAGATTAGCATAGACATCAAGGTTGTTAACAACGATGCTAATCTCCGGTTTA 659
|||| ||||||||||| || ||| | |||||||||||| ||||||||| |||||||||||
Sbjct 600 AACTTAGAGAGATTAGTATCGACGTTAAGGTTGTTAACGACGATGCTAGTCTCCGGTTTA 659
Query 660 GCGTAGAAGACAAGAGTGTTTTAAAGATTAATCAGCTTCAATGGAAATTTAGAGGAAACT 719
||||||| || |||||||| ||||||||| |||||||||||||||||| |||||||||
Sbjct 660 GCGTAGACGATAAGAGTGTCCTAAAGATTAGTCAGCTTCAATGGAAATTCAGAGGAAACA 719
Query 720 CAAAGATCGTGATCGATGGTGTTACGATACAGATAAT-ATGGGATGTTTAT-AACTGGTT 777
|||||||||||||||||||||| || |||||||| || ||||||||||| | |||||| |
Sbjct 720 CAAAGATCGTGATCGATGGTGTGACAATACAGAT-ATCATGGGATGTTT-TCAACTGGCT 777
Query 778 GTTTGGTGACAAGGATAAGGTTAAACCGGATAAAG-TTCCCGCCGTGTTCTTACTCCGAT 836
|||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||| |
Sbjct 778 GTTTGGTGGCAAGGATAAGGTTAAACCGGAT-AAGATTCCCGCCGTGTTCTTACTCCGGT 836
Query 837 TTGAGAACCAAGATGTTGAAGGAAACGACGTGTTGATGATGAACAAGCGTGTAAGAGACG 896
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 837 TTGAGAACCAAGAGGTTGAAGGAAACGACGTTTTGATGATGAACAAGCGTGTAAGAGACG 896
Query 897 ATGT-AGTTTTGCGGAAGGAGAACACTCGAACGCCGTCGTTTTGGGCGAATTCATATGGT 955
|||| | |||| ||||||||||| |||||| |||||||||||||||| | | ||| ||
Sbjct 897 ATGTCA-TTTTACGGAAGGAGAATTGTCGAACACCGTCGTTTTGGGCGAGTACGTATAGT 955
Query 956 CATTGGTCTTCTTCTAGGATGTCTTCTGTGATGGAGTGGCCTAGTTGTAGGGAGGTAGAT 1015
||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||
Sbjct 956 CATTGGTCTTCTTCTAGGATGTCTTCTGTGATGGAGTGGTCTAGTTGTAGGGAAGAAGAT 1015
Query 1016 GAGAGGAGTTTTGGGTCTAAGAGTTGGTTCTCTTTGATTATCTATGCTTGGAGGAAGTAA 1075
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 GAGAGGAGCTTCGGGTCTAAGAGTTGGTTCTCTTTGATTATCTATGCTTGGAGGAAGTAA 1075
Query 1076 AAACACACTCAACTTAT-TTTATCAAtttttttt-tttGTATATAAAGCAAACAATTGGA 1133
||||||||||||||||| |||||||| |||| |||||||||||||||| |||||||
Sbjct 1076 AAACACACTCAACTTATCTTTATCAAAAAATTTTATTTGTATATAAAGCAACCAATTGGC 1135
Query 1134 TTTGAGGATATACCAAAGTGTATAAGAATCAGAGTTT 1170
|||||||||||| ||||||| |||||||||||||||
Sbjct 1136 TTTGAGGATATATGAAAGTGTGTAAGAATCAGAGTTT 1172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57429423480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5