BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481379
Length=1302
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25220.2 | Symbols: | Protein kinase superfamily protein | ... 1580 0.0
AT4G32000.2 | Symbols: | Protein kinase superfamily protein | ... 889 0.0
> AT2G25220.2 | Symbols: | Protein kinase superfamily protein
| chr2:10742713-10745594 REVERSE LENGTH=1573
Length=1573
Score = 1580 bits (855), Expect = 0.0
Identities = 959/1009 (95%), Gaps = 7/1009 (1%)
Strand=Plus/Plus
Query 168 AATTCATTTTTCCTTGTTAATGAGACGACTCGGCTCGATTAAAACTCAGAGAAGAACTTC 227
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 385 AATTCA-TTTTCCTTGTTAATGAGACGACTTGGCTCGATTAAAACTCAGAGAAGAACTTC 443
Query 228 TA-CCAACAAGGGTTACGTGCAGTTTTTCGATATCAAAACGCTCGAGAAAGCAACAGGCG 286
|| |||| |||||||||||||| |||||||||||||| || ||||||||||| |||||||
Sbjct 444 TATCCAA-AAGGGTTACGTGCAATTTTTCGATATCAAGACCCTCGAGAAAGCGACAGGCG 502
Query 287 GTTTTAAAGACAGTAGTGTAATCGGACAAGGCGGTTTCGGTTGCGTTTACAAGGCTTGTT 346
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 503 GTTTTAAAGAAAGTAGTGTAATCGGACAAGGCGGTTTCGGATGCGTTTACAAGGGTTGTT 562
Query 347 TGGACAACAATGTGAAAGCAGCGATCAAGAAGATCGAAAACGTTAGCCAAGAAGCAAAAC 406
||||||| || || ||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 563 TGGACAATAACGTTAAAGCAGCGGTCAAGAAGATCGAGAACGTTAGCCAAGAAGCAAAAC 622
Query 407 GAGAATTTCAGAATGAAGTTGACTTGTTGAGCAAGATCCATCACCCGAACGTTATTTCAT 466
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 623 GAGAATTTCAGAATGAAGTTGACTTGTTGAGCAAGATCCATCACTCGAACGTTATATCAT 682
Query 467 TGTTGGGCTCCGCAAGCGAAATCAACTCGAGTTTCATCGTTTATGAGCTTATGGAGAAAG 526
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 683 TGTTGGGCTCTGCAAGCGAAATCAACTCGAGTTTCATCGTTTATGAGCTTATGGAGAAAG 742
Query 527 GATCATTAGATGAACAGTTACATGGGCCTTCTCGTGGATCAGCTCTAACATGGCACATGC 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 GATCATTAGATGAACAGTTACATGGGCCTTCTCGTGGATCAGCTCTAACATGGCACATGC 802
Query 587 GTATGAAGATTGCTCTTGATACAGCTAGAGGACTAGAGTATCTCCATGAGCATTGTCATC 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 803 GTATGAAGATTGCTCTTGATACAGCTAGAGGACTAGAGTATCTCCATGAGCATTGTCGTC 862
Query 647 CACCAGTTATCCACAGGGATTTGAAATCTTCGAATATTCTTCTTGATTCTTCCTTCAATG 706
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 863 CACCAGTTATCCACAGAGATTTGAAATCTTCGAATATTCTTCTTGATTCTTCCTTCAACG 922
Query 707 CCAAGATTTCAGATTTCGGTCTTGCTGTATCGCTTGATGAGCATGGCAAGAACAACATTA 766
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 923 CCAAGATTTCAGATTTCGGTCTTGCTGTATCGCTGGATGAACATGGCAAGAACAACATTA 982
Query 767 AACTATCTGGTACGCTTGGTTATGTTGCCCCGGAATATCTCCTTGACCATGGGAAACTGA 826
|||| ||||| || ||||||||||||||||||||||| ||||||||| || |||||||
Sbjct 983 AACTCTCTGGGACACTTGGTTATGTTGCCCCGGAATACCTCCTTGAC---GGAAAACTGA 1039
Query 827 CGGATAAGAGTGATGTTTATGCATTTGGAGTGGTTCTGCTTGAACTCTTGTTGGGTAGAC 886
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1040 CGGATAAGAGTGATGTTTATGCATTTGGGGTAGTTCTGCTTGAACTCTTGTTGGGTAGAC 1099
Query 887 GGCCGGTTGAGAAATTGACACCAGCTCAATGCCAATCTCTTGTGACTTGGGCAATGCCAC 946
| || ||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1100 GACCAGTTGAAAAATTAACTCCAGCTCAATGCCAATCTCTTGTAACTTGGGCAATGCCAC 1159
Query 947 AACTTACCGATAGATCCAAGCTTCCAAACATTGTGGATGCGGTTATAAAAGATACAATGG 1006
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1160 AACTTACCGATAGATCCAAGCTTCCAAACATTGTGGATGCCGTTATAAAAGATACAATGG 1219
Query 1007 ATCTCAAGCACTTATACCAGGTAGCAGCCATGGCTGTGTTGTGCGTGCAGCCAGAACCGA 1066
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1220 ATCTCAAACACTTATACCAGGTAGCAGCCATGGCTGTGTTGTGCGTGCAGCCAGAACCAA 1279
Query 1067 GTTACCGGCCGTTAATAACCGATGTTCTTCACTCACTTGTTCCATTGGTTCCGGTAGAGC 1126
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1280 GTTACCGGCCGTTGATAACCGATGTTCTTCACTCACTTGTTCCACTGGTTCCGGTAGAGC 1339
Query 1127 TAGGAGGGACTCTCCGGTTAACACGATAATTGACATAA-CACGCCAAAA 1174
||||||||||||||||||||||| ||| ||| ||| || ||||||||||
Sbjct 1340 TAGGAGGGACTCTCCGGTTAACAAGATGATTCACAGAAACACGCCAAAA 1388
Score = 276 bits (149), Expect = 4e-73
Identities = 164/171 (96%), Gaps = 1/171 (1%)
Strand=Plus/Plus
Query 1 ATGGGAAGTGGTGAAGAAGACAGATTTGATGCTCATAAGAAACTTCTGATTGGTCTTATA 60
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 148 ATGGGAAGTGGTGAAGAAGATAGATTTGATGCTCATAAGAAACTTCTGATTGGTCTCATA 207
Query 61 ATCAGTTTCTCTTCTCTTAGCCTTATAATCTTGTTCTGTTTTGGCTTTTGGGTTTATCGC 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 208 ATCAGTTTCTCTTCTCTTGGCCTTATAATCTTGTTCTGTTTTGGCTTTTGGGTTTATCGC 267
Query 121 AAGAACCAATCTCCCAAATCCATCAACAATTCAGGTACTTTCA-CAGAAAT 170
|||||||||||||| |||||||||||||| ||||||||||||| ||| |||
Sbjct 268 AAGAACCAATCTCCAAAATCCATCAACAACTCAGGTACTTTCATCAGTAAT 318
Score = 209 bits (113), Expect = 4e-53
Identities = 125/130 (96%), Gaps = 3/130 (2%)
Strand=Plus/Plus
Query 1175 TTTGTATAGGGTTATGATCCGCTCATCTCAAAGTTTGGGGGTAAGAATGTGAGAATATAA 1234
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1441 TTTGTATAGGGTTATGATCCACTCATCTGAAAGTTTGGGGGTAAGAATGTGAGAATATAA 1500
Query 1235 GTTTTCCAGGGTTGTTGAGTTC--TATAATTATATTTGTTTCTTTTTATTGTCAAATATA 1292
||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1501 GTTTT-CAGGGTTGTTGAGTTCTATATAATTATATTTGTTTCTTTTTATTGTCAAATATA 1559
Query 1293 ATTATATTTT 1302
||||||||||
Sbjct 1560 ATTATATTTT 1569
> AT4G32000.2 | Symbols: | Protein kinase superfamily protein
| chr4:15473971-15476685 REVERSE LENGTH=1402
Length=1402
Score = 889 bits (481), Expect = 0.0
Identities = 786/931 (84%), Gaps = 29/931 (3%)
Strand=Plus/Plus
Query 230 CCAACAAGGG-TTACGTGCAGTTTTTCGA-TATCAAAACGCTCGAGAAAGCAACAGGCGG 287
|||| ||||| || ||||||| ||||| || ||| || || |||||||||||||||||
Sbjct 359 CCAAGAAGGGCTT-TGTGCAGTCCTTCGATTA-CAAGACACTAGAGAAAGCAACAGGCGG 416
Query 288 TTTTAAAGACAGTAGTGTAATCGGACAAGGCGGTTTCGGTTG-CGTTTACAAGGCTTGTT 346
||| |||||| ||| | | || |||| |||||| ||||| | ||||||||||| ||||
Sbjct 417 TTTCAAAGACGGTAATCTTATAGGACGAGGCGGGTTCGG-AGATGTTTACAAGGCCTGTT 475
Query 347 T-GGACAACAA-TGTGAAAGCAGCGA-TCAAGAAGATCGAAAACGTTAGCCAAGAAGCAA 403
| || |||||| | |||||| | |||| ||||||||||||||||| ||||||||||
Sbjct 476 TAGG-CAACAACACT-CTAGCAGC-AGTCAAAAAGATCGAAAACGTTAGTCAAGAAGCAA 532
Query 404 AACGAGAATTTCAGAATGAAGTTGACTTGTTGAGCAAGATCCATCACCCGAACGTTATTT 463
||||||||||||||||||||||||| |||||||||||||| || ||||||||| | || |
Sbjct 533 AACGAGAATTTCAGAATGAAGTTGATTTGTTGAGCAAGATTCACCACCCGAACATCATCT 592
Query 464 CATTGTTGGGCTCCGCAAGCGAAATCAACTCGAGTTTCATCGTTTATGAGCTTATGGAGA 523
||||||| || | | || ||| ||| |||||||| ||||| || ||||| ||||| |
Sbjct 593 CATTGTTTGGATATGGAAATGAACTCAGTTCGAGTTTTATCGTCTACGAGCTGATGGA-A 651
Query 524 A-AGGATCATTAGATGA-ACAGTTACATGGGCCTTCTCGTGGATCAGCTCTAACATGGCA 581
| |||||||| ||| | ||||||||| || |||||||| ||||| ||| ||||||||||
Sbjct 652 AGCGGATCATTGGAT-ACACAGTTACACGGACCTTCTCGGGGATCGGCTTTAACATGGCA 710
Query 582 CATGCGTATGAAGATTGCTCTTGATACAGCTAGAGGACTAGAGTATCTCCATGAGCATTG 641
|||||| ||||||||||||||||||||||| |||| | ||||||||||| |||| |||
Sbjct 711 CATGCGGATGAAGATTGCTCTTGATACAGCAAGAGCTGTTGAGTATCTCCACGAGCGTTG 770
Query 642 TCATCCACCAGTTATCCACAGGGAT-TTGAAATCTTCGAATATTCTTCTTGATTCTTCCT 700
|| ||| || ||||||||||| ||| || ||||| || |||||||| |||||||||||||
Sbjct 771 TCGTCCTCCGGTTATCCACAGAGATCTT-AAATCGTCAAATATTCTCCTTGATTCTTCCT 829
Query 701 TCAATGCCAAGATTTCAGATTTCGGTCTTGCTGT-ATCGCTTGATGAGCATGGCAAGAAC 759
|||| ||||||||||| ||||| |||||||| || || | | | | || ||||| |||
Sbjct 830 TCAACGCCAAGATTTCGGATTTTGGTCTTGCGGTAAT-GGTGGGGGCTCACGGCAAAAAC 888
Query 760 AACATTAAACTATCTGGTACGCTTGGTTATGTTGCCCCGGAATATCTCCTTGACCATGGG 819
|||||||||||||| || || |||||||||||||| || |||||||||| | | ||||
Sbjct 889 AACATTAAACTATCAGGAACACTTGGTTATGTTGCTCCAGAATATCTCC-T-A-GATGGA 945
Query 820 AAACTGACGGATAAGAGTGATGTTTATGCATTTGGAGTGGTTCTGCTTGAACTCTTGTTG 879
||| ||||||||||||||||||||||||| ||||| |||||| | ||||||||||||||
Sbjct 946 AAATTGACGGATAAGAGTGATGTTTATGCGTTTGGTGTGGTTTTACTTGAACTCTTGTTA 1005
Query 880 GGTAGACGGCCGGTTGAGAAATTGACACCAGCTCAATGCCAATCTCTTGTGACTTGGGCA 939
|| |||||||||||||||||||||| | | ||| || ||||||||||| |||||||||
Sbjct 1006 GGAAGACGGCCGGTTGAGAAATTGAGTTCGGTTCAGTGTCAATCTCTTGTCACTTGGGCA 1065
Query 940 ATGCCACAACTTACCGATAGATCCAAGCTTCC-AAACATTGTGGATGCGGTTATAAAAGA 998
||||| |||||||| |||||||| |||||||| ||| || |||||| ||||||| |||||
Sbjct 1066 ATGCCCCAACTTACGGATAGATCAAAGCTTCCGAAA-ATCGTGGATCCGGTTATCAAAGA 1124
Query 999 TACAATGGATC-TCAAGCACTTATACCAGGTAGCAGCCATGGCTGTG-TTGTGCGTGCAG 1056
||||||||||| | ||||||||||||||||| |||||| |||| ||| || || || ||
Sbjct 1125 TACAATGGATCAT-AAGCACTTATACCAGGTGGCAGCCGTGGCAGTGCTT-TGTGTACAA 1182
Query 1057 CCAGAACCGAGTTACCGGCCGTTAATAACCGATGTTCTTCACTCACTTGTTCCATTGGTT 1116
|||||||||||||| || ||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1183 CCAGAACCGAGTTATCGACCGTTGATAACCGATGTTCTTCACTCACTAGTTCCATTGGTT 1242
Query 1117 CCGGTAGAGCTAGGAGGGACTCTCCGGTTAA 1147
|||||||||||||||||||||||||||||||
Sbjct 1243 CCGGTAGAGCTAGGAGGGACTCTCCGGTTAA 1273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64055895420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5