BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481381
Length=1130
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25260.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1784 0.0
AT5G25265.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 431 8e-120
> AT2G25260.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G25265.1); Has
35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
| chr2:10755524-10757772 REVERSE LENGTH=1176
Length=1176
Score = 1784 bits (966), Expect = 0.0
Identities = 1079/1133 (95%), Gaps = 9/1133 (1%)
Strand=Plus/Plus
Query 1 GAGAAAATGGGATTTCGTGGGAAGTTTTTCTTCCCAATTCTCATGACTCTATCGTTATTT 60
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 GAGAAAATGGGATTCCGTGGGAAGTACTTCTTCCCAATTCTCATGACTCTATCGTTATTT 60
Query 61 CTAATAATTAGATACAACTACATAGTCTCCGATGATCCTCCTCTCCGGCAAGAATTCCCC 120
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 CTAATAATCAGATACAACTACATAGTCTCCGATGATCCTCCTCTCCGGCAAGAACTCCCC 120
Query 121 GGTCGCCGAGCAGCCTCTTCCAGAGATGAGGTCACATATTCCGTCAAGACTCCGTCAAAG 180
||||||||| |||| |||||| ||||||| |||||||| ||||||||||||||||||||
Sbjct 121 GGTCGCCGATCAGCTTCTTCCGGAGATGACATCACATATACCGTCAAGACTCCGTCAAAG 180
Query 181 AAGACAAAGAGACTGTTTCACACGGCGGTGACAGCCACGGATTCCGTGTATAGCACGTGG 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 AAGACAAAGAGACTGTTTCACACGGCGGTGACAGCCACGGATTCCGTGTACAGCACGTGG 240
Query 241 CAGTGTCGGGTCATGTACTATTGGTACAACAGGTTCAGGGATGAA-CCGGGATCGGATAT 299
||||||||||||||||| ||||||||||||||||||||||| ||| ||||| ||||||||
Sbjct 241 CAGTGTCGGGTCATGTATTATTGGTACAACAGGTTCAGGGACGAACCCGGG-TCGGATAT 299
Query 300 GGGTGGGTATACCCGGATCTTGCATTCGGGTCGACCCGATGGACTCATGGATGAGATCCC 359
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GGGCGGGTATACCCGGATCTTGCATTCGGGTCGACCCGATGGACTCATGGATGAGATCCC 359
Query 360 TACCTTT-GTTGCTGACCCTCTTCCTTCCGGTGTTGACAAGGGATATGTAGTTCTAAATA 418
|| |||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 360 TA-CTTTCGTTGCTGACCCTCTTCCCTCCGGTGTTGACAAGGGATATGTTGTTCTAAATA 418
Query 419 GGCCTTGGGCGTTTGTACAATGGCTTCAACAAGCACATATAGAGGAAGATTACATTCTCA 478
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GGCCTTGGGCCTTTGTTCAATGGCTTCAACAAGCACATATAGAGGAAGATTACATTCTCA 478
Query 479 TGGCGGAACCTGATCATATCATAGTTAAACCAATACCAAACCTAGCCAGAGGCAATCTCG 538
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 479 TGGCGGAACCTGATCATATCATAGTTAAACCGATACCAAACCTAGCTAGAGGCAATCTCG 538
Query 539 CGGCTGCGTTTCCCTTTTTCTACATTGAACCGAAGAAATATGAATCGGTTCTCCGCAAAT 598
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 539 CGGCTGCGTTTCCCTTTTTCTACATTGAACCAAAGAAATATGAATCGGTTCTCCGCAAAT 598
Query 599 TCTTCCCCAAAGAGAATGGACCGATATCAAGAATTGATCCCATCGGGAATTCTCCAGTGA 658
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 599 TCTTCCCCAAAGAGAATGGACCAATATCAAGAATCGATCCCATCGGGAATTCTCCAGTGA 658
Query 659 TTGTCACTAAGAATGCATTGATGAAAATTGCTCCAACATGGATGAACGTTTCTTTGGCTA 718
| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 659 TCGTCACTAAGAATGCATTAATGAAAATTGCTCCAACATGGATGAATGTTTCTTTGGCTA 718
Query 719 TGAAAAATGACCCACAAACAGATAAAGCTTTTGGTTGGGTTCTTGAAATGTATGCATACG 778
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 719 TGAAGAATGACCCACAAACAGATAAAGCTTTTGGTTGGGTCCTTGAAATGTATGCATATG 778
Query 779 CTGTTTCTTCTGCGTTACACGGCGTGAGCAACATTCTACACAAAGACTTCATGATTCAGC 838
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 779 CTGTTTCTTCTGCGTTACACGGCGTGAGCAACATTCTACACAAGGACTTCATGATTCAGC 838
Query 839 CTCCTTGGGACACCGAAACAAAGAACACGTTCATAATACATTACACTTACGGCTGCGATT 898
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 839 CTCCTTGGGACACTGAAACAAAGAAGACGTTCATAATACATTACACTTACGGCTGTGATT 898
Query 899 TCGACATGAAGGGGAAGATGATGGTAGGAAAGATTGGAGAATGGAGATTCGATAAACGGT 958
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 899 TCGACATGAAGGGGAAGATGATGGTAGGGAAGATTGGAGAATGGAGATTCGATAAACGGT 958
Query 959 CTTACGGT-AGTAAACCGCCCCCAAGAAATCTCCCATTGCCTCCACAAGGTGTTCCCGAG 1017
||||||| | |||||| ||||||||||||||| || ||||||| | |||||||||||||
Sbjct 959 CTTACGGGGA-TAAACCACCCCCAAGAAATCTCACACTGCCTCCCCGAGGTGTTCCCGAG 1017
Query 1018 AGCGTGGTGACATTGGTGACAATGGTGAACGAAGCTACAGCTAATATTCCCAACTGGGAA 1077
|||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||
Sbjct 1018 AGCGTGGTGACATTGGTGACAATGATAAACGAAGCTACTGCTAATATTCCCAACTGGGAA 1077
Query 1078 TCTTGAAAAGAAATTCttttttttttCCTAAACAAGACTCTATTCCTTTAATT 1130
||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1078 TCTTGAAAAGAAATTCTTTTTTT---CCTAAGCAAGACTCTATTCCTTTAATT 1127
> AT5G25265.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: plasma membrane, membrane; EXPRESSED IN: cultured
cell, leaf; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT2G25260.1); Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:8754553-8756948
REVERSE LENGTH=1435
Length=1435
Score = 431 bits (233), Expect = 8e-120
Identities = 697/917 (76%), Gaps = 48/917 (5%)
Strand=Plus/Plus
Query 190 AGACTGTTT-CACACGGCGGTGACAGCCACGGATTCCGTGTATAGCACGTGGCAGTGTCG 248
||||| ||| |||||||||||||| || | |||||||| |||| ||| ||||| ||| |
Sbjct 295 AGACT-TTTCCACACGGCGGTGACGGCGTCTGATTCCGTCTATAACACTTGGCAATGTAG 353
Query 249 GGTCATGTACTATTGGTAC-AACAGGTTC-AG----GGATGAACCGGGATCGGATATGGG 302
|| ||||||||||||| | || || ||| || | || ||| || || || |||||
Sbjct 354 AGTTATGTACTATTGGTTCAAAAAGATTCAAGCTTCTGCTGGACCCGGTTCTGAAATGGG 413
Query 303 TGGGTATACCCGGATCTTGCATTCGGGTCGACCCGATGGACT-CATGGATGAGATCCCTA 361
||||| ||| |||||||||||||| ||| ||| ||| | | ||||||||||| ||||
Sbjct 414 TGGGTTTACTCGGATCTTGCATTCCGGTAAACCGGAT-CAGTATATGGATGAGATTCCTA 472
Query 362 CCTTTGTTGCTGACCCTCTT-CCTTCCGGTG-TTGA-CAAGGGATATGTAGT-TCTAAAT 417
| ||||||||| | ||| || ||||| || | | || | |||| ||||| || | | |||
Sbjct 473 CTTTTGTTGCTCAGCCT-TTACCTTCTGG-GATGGATC-AGGGTTATGTTGTGT-TGAAT 528
Query 418 AGGCCTTGGGCGTTTGTACAATGGCTTCAACAAGCACATATAGAGGAAGATTACATTCTC 477
||||| ||||| ||||||||||||||||||||| || ||||| | |||||||| ||| |
Sbjct 529 AGGCCATGGGCATTTGTACAATGGCTTCAACAAACAGATATAAAAGAAGATTATATTTTG 588
Query 478 ATGGCGGAACCTGATCATATCATAGTTAAACCAATACCAAACCTAGCCAGAGGCAATCTC 537
||| | || |||||||||||||| |||||||| |||||||| | || | || ||
Sbjct 589 ATGTCTGAGCCTGATCATATCATTGTTAAACCTATACCAAATTTGGCTAAAGATGGGCTT 648
Query 538 GCG-GCTGCGTTTCCCTTT-TTCTACATTGAACCGAAGAAA-TATGA-ATCGGT-TCTCC 592
| | ||||||||| ||||| || |||||||||||||| ||| ||||| | ||| | |
Sbjct 649 G-GAGCTGCGTTT-CCTTTCTTTTACATTGAACCGAA-AAAGTATGAGA-AGGTGT-TGA 703
Query 593 GCAAATTCTT-CCCCAAAGAGA-ATGGACC-GATATC-AAGAATTGATCCCATCGGGAAT 648
| || | || || ||| || | ||||| | || | || || ||||| || || ||
Sbjct 704 G-GAAGTATTATCCTGAAGTGAGA-GGACCGGTTA-CTAA-TATCGATCCGATAGGAAAC 759
Query 649 TCTCCAGTGATTGTCACTAAGAATGCATTGATGAAAATTGCTCCAACATGGATGAACGTT 708
||||| || ||||| ||| |||| |||| ||| ||||||||||| |||||||| |||
Sbjct 760 TCTCCTGTCATTGTTGGAAAGGATGCTTTGAAGAAGATTGCTCCAACTTGGATGAATGTT 819
Query 709 TCTTTGGCTATGAAAAATGACCCACAAACAGATAAAGCTTTTGGTTGGGTTCTTGAAATG 768
|||||||||||||| || || || || |||| || |||||||| |||||||||||||||
Sbjct 820 TCTTTGGCTATGAAGAAGGATCCTGAAGCAGACAAGGCTTTTGGATGGGTTCTTGAAATG 879
Query 769 TATGCATACGCTGTTTCTTCTGCGTTACACGGCGTGAGCAACATTCTACACAAAGACTTC 828
||||| || ||||| || ||||| || || || || ||||| ||||||||||||||||||
Sbjct 880 TATGCTTATGCTGTCTCATCTGCATTGCATGGTGTTAGCAATATTCTACACAAAGACTTC 939
Query 829 ATGATTCAGCCTCCTTGGGACACCGAAACAAA-GAACACGTTCATAATACATTACACTTA 887
||||||||||| || ||||| | || || || || ||| ||||| ||||||||
Sbjct 940 ATGATTCAGCCACCATGGGATATAGAGGTTGGTGA-CAAGTACATCATACACTACACTTA 998
Query 888 CGGCTGCGATT-TCGACATGAAGGGGAAGATGATGGTA-GG-AAAGATTGGAGAATGGAG 944
|| || |||| | || |||||||| || || | || || ||| || || ||||||||
Sbjct 999 TGGATGTGATTAT-GATATGAAGGGTAA-ATTAACTTATGGGAAA-ATCGGGGAATGGAG 1055
Query 945 ATTCGATAAACGGTCTTACGGTAGTAAACCGCCCCCAAGAAATCTCCCATTGCCTCCACA 1004
||| || ||| | || || | ||| ||||| || ||||| || || || |||||||||
Sbjct 1056 ATTTGACAAAAGATCGTATGATAGCAAACCACCACCAAGGAACCTTACAATGCCTCCACC 1115
Query 1005 AGGTGTTCC-CGAGAGCGTGGTGACATTGGTGACA-ATGGTGAACGAAGCTACAGCTAAT 1062
|||||| | | | || ||||| ||| | |||| | ||| | || ||||| || || ||
Sbjct 1116 TGGTGTTTCACAA-AGTGTGGTAACACTAGTGA-AGATGATAAATGAAGCCACGGCCAAC 1173
Query 1063 ATTCCCAACTGGGAATC 1079
|| || ||||||| |||
Sbjct 1174 ATACCAAACTGGGGATC 1190
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55421401680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5