BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481382
Length=1771
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25270.1 | Symbols: | unknown protein; LOCATED IN: plasma m... 2614 0.0
AT3G43686.1 | Symbols: | transposable element gene | chr3:1558... 289 8e-77
> AT2G25270.1 | Symbols: | unknown protein; LOCATED IN: plasma
membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING:
13 growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G12400.1); Has 35333 Blast hits
to 34131 proteins in 2444 species: Archae - 798; Bacteria
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:10759724-10762568
FORWARD LENGTH=1903
Length=1903
Score = 2614 bits (1415), Expect = 0.0
Identities = 1625/1727 (94%), Gaps = 11/1727 (1%)
Strand=Plus/Plus
Query 1 AGTAGTACTAATGtctcttcttctcttcttcttctgttgcctcttga---c-ctttc--t 54
||||||| |||||||||||| | ||||| ||||||||||| |||| | | ||||| |
Sbjct 46 AGTAGTAGTAATGTCTCTTC-T-TCTTC-TCTTCTGTTGCTTCTTTACCTCTCTTTCTAT 102
Query 55 ttctctttctcatgaagcttctACTATTCACATTTCTCCTACTCAGCCTCCAGTAGCTTC 114
||||| |||||||| |||||| ||||||||||||||||||||||||||||| | ||||||
Sbjct 103 TTCTCATTCTCATGGAGCTTCCACTATTCACATTTCTCCTACTCAGCCTCCCGCAGCTTC 162
Query 115 TTCAGAGAAAACTGGTTCTGTAATGAAATTTATAGTGGCAGAGGCGCCATTATTGGGACC 174
||| |||||||| ||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 163 TTCGGAGAAAACCGGTTCTGTAATGAAATTTATAGTAGCAGAGGCACCATTATTAGGACC 222
Query 175 TGGAGGTTTCAACAACCCTCAAGTAAATGAAGTTGCTTCAGTAGCTTTAGCTGCTCAAAG 234
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 223 TGCAGGTTTCAACAACCCTCAAGTAATTGAAGTTGCTTCAGTAGCTTTAGCTGCTCAAAG 282
Query 235 AACATATAGAAAAGATCCTCTTAATGGTTTTGAGAAATATACTGGAGGATGGAATATCAG 294
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 283 AACATATAGAAAAGATCCTCTCAATGGTTTTGAGAAATATACTGGAGGATGGAATATCAG 342
Query 295 CAACCAACATTACTGGGCTTCAGTGAGCTATACAGCTGTTCCTCTCTTTGTTCTTGCTGC 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 CAACCAACATTACTGGGCTTCAGTGAGCTATACAGCTGTTCCTCTCTTTGTTCTTGCTGC 402
Query 355 TGTTTGGTTTCTTGGGTTTGGCATCTGTTTATTAGTCATCTGTATGTGTCACATTTGCCA 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 TGTTTGGTTTCTTGGGTTTGGCATCTGTTTATTAGTCATCTGTATGTGTCACATTTGCCA 462
Query 415 TAGAACCAACTCTGTTGGATACTCTAAAGTTGCTTATGTTGTCTCCCTCATCTTCCTCCT 474
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 TAGAACCAATTCTGTTGGATACTCTAAAGTTGCTTATGTTGTCTCCCTCATCTTCCTCCT 522
Query 475 CATCTTCACTGTTATTGCAATAATCGGATGTGTTCTTCTATATTCGGGTCAGATCAGGTA 534
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 523 CATCTTCACTGTTATTGCAATAATCGGATGTGTTCTGCTATACTCGGGTCAGATAAGGTA 582
Query 535 CAACAAAAGCACGACAGAGACATTACAGTATGTCATGAGTCAAGCGGATAGCACGATTTC 594
|| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 583 TAATAAAAGCACGACAGAGACATTAGAGTATGTCATGAGTCAAGCAGATAGCACGATTTC 642
Query 595 ACAGCTTAGAGCTATCTCTGATTATCTTGCTTCAGCTAAGCAGGCTGCAGTTCTTCAGGT 654
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 643 GCAGCTTAGAGCTATCTCAGATTATCTTGCTTCAGCCAAGCAGGCTGCAGTTCTTCAGGT 702
Query 655 TCTTTTACCTGCAAATGTCCAAACTGAAATCGATCAGATCGGAGCGAAACTGAATTCTTC 714
|||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||
Sbjct 703 TCTTTTACCTGCAAATGTACAAACTGAAATCGATCAGATCGGAGTGAAACTGGATTCTTC 762
Query 715 TGTAGCTACCATCACTGAGAAATCGACTAATAGCTCCAATAACATTAGACATTTCCTTGA 774
||||||||| |||||||||||||||||||||||||||||| |||| |||||||| |||||
Sbjct 763 TGTAGCTACTATCACTGAGAAATCGACTAATAGCTCCAATCACATAAGACATTTTCTTGA 822
Query 775 TTCTGTGAGTGTAGCGCTTATCGTAGTTTCAATTGTCATGCTTGTCGTGACATTTCTTGG 834
||||||||| ||||||||||| ||||||||||| ||||||||||| ||||| ||||||||
Sbjct 823 TTCTGTGAGAGTAGCGCTTATTGTAGTTTCAATCGTCATGCTTGTGGTGACTTTTCTTGG 882
Query 835 TCTCGTTTCTTCAATTTTCGGGATGCAGGTCATCGTTTACACACTTGTGATTTTGGGATG 894
|||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 883 TCTCGTTTCTTCGATTTTCGGGATGCAGGTCATCGTTTACACCCTTGTGATCTTGGGATG 942
Query 895 GATTCTGGTGACTGGTACATTCATTTTGAGCGGAACATTCCTTGTGCTACACAATGCAAC 954
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 943 GATTCTGGTGACTGGTACATTCATCTTGAGTGGAACATTCCTTGTGCTACACAATGCAAC 1002
Query 955 TGCAGACACATGTGTGGCAATGAGCGAATGGGTTGAGAGACCATCAAGCAACACGGCTTT 1014
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1003 TGCAGACACATGTGTGGCAATGAGCGAATGGGTTGAGAGACCATCAAGCAATACGGCTCT 1062
Query 1015 GGACGAGATCTTGCCTTGTACAGACAATGCCACTGCTCAGGAAACCTTGATGCGTAGCAG 1074
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1063 GGACGAGATATTGCCTTGTACAGACAATGCCACAGCTCAGGAAACCTTGATGCGTAGCAG 1122
Query 1075 AGAGGTGACAGGG-CAGCTCGTGGATCTAATCAACACAGTCATTACTAATGTCTCTAACA 1133
||| ||||| ||| ||||| ||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 1123 AGAAGTGAC-GGGTCAGCTTGTGGAGCTAATCAACACAGTCATCACTAATGTCTCCAACA 1181
Query 1134 TCAACTTCTCTCCAGTCTTTGTCCCAATGTATTATAACCAATCTGGACCGTTGCTTCCAT 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 TCAACTTCTCTCCAGTCTTTGTCCCAATGTATTATAACCAATCTGGACCGTTGCTTCCAT 1241
Query 1194 TGCTCTGCAATCCTTTTAACCATGACCTTACCGATCGTTCTTGTTCCCCTGGTGAGCTCG 1253
||||||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||
Sbjct 1242 TGCTCTGCAATCCTTTTAACCATGACCTTACCGATCGCTCTTGCTCGCCTGGTGATCTCG 1301
Query 1254 ATTTGAACAATGCTACTCAAGCATGGACCAGTTTCGTGTGCCAAGTGAGCCAGAACGGGA 1313
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 ATTTGAACAATGCTACTGAAGCATGGACCAGTTTCGTGTGCCAAGTGAGCCAGAACGGGA 1361
Query 1314 CTTGCGCCACAACAGGGAGGCTCACACCGGCGTTGTATAGTCAGATGGCATCAGGAGTGA 1373
||||| |||||||||| ||||| ||||| ||| |||| ||||||||||||||||| || |
Sbjct 1362 CTTGCACCACAACAGGAAGGCTTACACCTGCGCTGTACAGTCAGATGGCATCAGGTGTTA 1421
Query 1374 ACATCAGCACGGGGTTAATCAGAGATGCACCGTTCCTTGTCGAGCTTCAGGACTGTTCAT 1433
| ||||||||||| || |||||||| || || ||||| ||| ||||||||||||||||||
Sbjct 1422 ATATCAGCACGGGATTGATCAGAGACGCGCCATTCCTGGTCCAGCTTCAGGACTGTTCAT 1481
Query 1434 ATGCAAAGCAGACCTTTAGAGACATAACCAATGACCATTGTCCTGGACTCCAACGTTATG 1493
| ||||| |||||||||||||||||||| |||||||||||||||||||| || |||||||
Sbjct 1482 ACGCAAAACAGACCTTTAGAGACATAACGAATGACCATTGTCCTGGACTACAGCGTTATG 1541
Query 1494 GCTATTGGGTCTATGTGGGTCTGGCCATATTAGCGACCGCTGTGATGCTCTCACTTATGT 1553
|||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 1542 GCTATTGGGTCTATGTGGGTCTGGCCATTTTAGCAACGGCTGTGATGCTCTCACTTATGT 1601
Query 1554 TCTGGATCATTTACAGTAGAGAGAGAAGGCATCGGAAGGAAGCTCTGCCTGAATTTTCAG 1613
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1602 TCTGGATCATTTACAGTAGAGAGCGAAGGCATCGGAAGGAAGCTCTGCCTGAATTTTCTG 1661
Query 1614 ACAGTAAGGAGATTGTAAGAGTTAACTTTTGATGTATGCCTCTGTAGATCTTAAGCAAAG 1673
| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1662 AAAGTAAGGAGATTGTAAGAGTTAACTTTTGATGTATGTCTCTGTAGATCTTAAGCAAAA 1721
Query 1674 TGTTTTAAGTCTCAACACACTTGATTTGTGCTTTCTTGTCTGAACAT 1720
||||| ||||||||| | ||||||||||||||||| |||||||||||
Sbjct 1722 TGTTTCAAGTCTCAAGATACTTGATTTGTGCTTTCATGTCTGAACAT 1768
> AT3G43686.1 | Symbols: | transposable element gene | chr3:15587720-15590947
FORWARD LENGTH=3228
Length=3228
Score = 289 bits (156), Expect = 8e-77
Identities = 187/202 (93%), Gaps = 2/202 (1%)
Strand=Plus/Plus
Query 581 GATAGCACGATTTCACAGCTTAGAGCTATCTCTGATTATCTTGCTTCAGCTAAGCAGGCT 640
|||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 2533 GATAGCACGATTTCGCAGCTTAGAGCTATCTCAGATTATCTTGCTTCAGCCAAGCAGGCT 2592
Query 641 GCAGTTCTTCAGGTTCTTTTACCTGCAAATGTCCAAACTGAAATCGATCAGATCGGAGCG 700
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||
Sbjct 2593 GCAGTTCTTCAGGTTCTTTTACCTGCAAATGTACAAACTGATATCGATCAGATCGGATCG 2652
Query 701 AAACTGAATT-CTTCTGTAGCTACCATCACTGAGAAATCGACTAATAGCTCCAATAACAT 759
|||||| ||| || ||||||||| ||||||||||||||||||| || ||||||| ||||
Sbjct 2653 AAACTGGATTTCT-CTGTAGCTATTATCACTGAGAAATCGACTAGTAACTCCAATCACAT 2711
Query 760 TAGACATTTCCTTGATTCTGTG 781
|||||||||||||||||||||
Sbjct 2712 AAGACATTTCCTTGATTCTGTG 2733
Score = 198 bits (107), Expect = 1e-49
Identities = 119/125 (95%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 953 ACTGCAGACACATGTGTGGCAATGAGCGAATGGGTTGAGAGACCATCAAGCAACACGGCT 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2893 ACTGCAGACACATGTGTGGCAATGAGCGAATGGGTTGAGAGACCATCAAGCAATACGGCT 2952
Query 1013 TTGGACGAGATCTTGCCTTGTACAGACAATGCCACTGCTCAGGAAACCTTGATGCGTAGC 1072
|||||||||| ||||||||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct 2953 ATGGACGAGATATTGCCTTGTACAGACAATGCCACAGCTCAAGAATCCTTGATGCGTAGC 3012
Query 1073 AGAGA 1077
|||||
Sbjct 3013 AGAGA 3017
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87599951025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5