BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481399
Length=1542
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25480.1 | Symbols: | TPX2 (targeting protein for Xklp2) pr... 2002 0.0
AT4G32330.1 | Symbols: | TPX2 (targeting protein for Xklp2) pr... 486 2e-136
> AT2G25480.1 | Symbols: | TPX2 (targeting protein for Xklp2)
protein family | chr2:10842863-10845698 FORWARD LENGTH=1722
Length=1722
Score = 2002 bits (1084), Expect = 0.0
Identities = 1415/1565 (90%), Gaps = 62/1565 (4%)
Strand=Plus/Plus
Query 1 CAAATCCTTCTCGC-CCATTGATACAGTCTACTTGTGCTTCAATGGACATTTGATTTCAT 59
|||||||||||| | ||||||| ||||| ||||| |||||||||||||||||||| ||||
Sbjct 75 CAAATCCTTCTC-CTCCATTGAGACAGTGTACTTCTGCTTCAATGGACATTTGATATCAT 133
Query 60 CAAATCCTGAGTTAGTTTACCAATGGA--CT-----C-T-GTAGCTGCTGACGGGGCGGA 110
||||||||| || ||||||| |||||| || | | |||||||||||||| |||||
Sbjct 134 CAAATCCTGCGTCAGTTTACGAATGGACTCTGAAAGCGTCGTAGCTGCTGACGGTGCGGA 193
Query 111 TTGTGCTATTTCAAATGGTGGTTTGACAATGGAAGGAGATAGTAGTAATGGAAA---TGG 167
|||||||||| ||||||||| |||||||||||||||| |||||||||||||| |||
Sbjct 194 TTGTGCTATTGCAAATGGTGAAGTGACAATGGAAGGAGACAGTAGTAATGGAAATGGTGG 253
Query 168 TACTTCGGAGAATTTGGAAGGTTGTTCTACTCAGCATCCTATGGAGGCATCTGAGGGCAC 227
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 254 TACTTCAGAGAATTTGGAATGTTGTTCTACTCAGCATCCTATGGAGGCATCTGAGGGCAC 313
Query 228 ACAGAATGAACAAGTGGATGATTCAAAACAGATGAGAGGACAAAAGGTGCAAGGAAAGGT 287
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 314 ACAGAATGAACAAGTGGATGATTCAAAACAGATGAGAGGACAAAAGGTGCAAGGAAGGGT 373
Query 288 CAAGCATGAGAAGACCTCTGGGGGCAAGAATATTCCATCAGTCTTGGTGAAGAAGAAAAG 347
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 374 CAAGCATGAGAAGACCTCTGGAGGCAAGAATATTCCATCAGTCTTGGTGAAGAAGAAAAA 433
Query 348 AGATGGGAAAGTGGTGGCATCAAATGGTTCGGTTGCTCCAAACGTACCTCCCGTAAAGTC 407
|||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||
Sbjct 434 AGATGGGAAAGTGGTGGCATCAAATGGTTCTGTTGCTCCAAACGTAAAGCCTGTAAAGTC 493
Query 408 TCCTAAGAGCAAATCGCTCAATGTTAGAGAGGCTCATGTCACGAAGCATGGGAAGAATGA 467
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 494 TCCTAAGAGCAAATCGCTCAATGGTAGAGAGGCTCATGTCACGAAGCATGGGAACCATGA 553
Query 468 CTCTAC-ACCAGCTGAAGCGACCAGGGACAAGCCAAAACTGATGGCAACAAGGAAACAAG 526
|||| | ||||||||||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct 554 CTCT-CTACCAGCTGAAGGGACCAGGGACAAGCCAAAACTGAGGGAAACAAGGAAACAAG 612
Query 527 TCAATGATACATCTGAAGATGATACGCAGTCTCCAAAAGAAGAAGATGGCAAACCTCGTC 586
||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||
Sbjct 613 TCAATGATACATCTGAAGATGATACACAGTATCCAAAAGAAGATGATGGCAAACCTCGTC 672
Query 587 GAGCTAGTGCACTTCCAAATTATGGATTCAGTTTTAGATGTGACCAACGAGCTGAAAAAA 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 GAGCTAGTGCACTTCCAAATTATGGATTCAGTTTTAGATGTGACCAACGAGCTGAAAAAA 732
Query 647 GAAGAGAGTTCTATTCAAAGCTTGAGGAAAAAATCCATGCGAAAGAAGAGGAAAAGAATA 706
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 733 GAAGAGAGTTCTATTCAAAGCTTGAGGAAAAGATCCATGCGAAAGAAGAAGAAAAGAATA 792
Query 707 CTGTACAAGCCAAGTCCAAGGAAACCCAAGAAGCTGAGCTTAAGATGCTAAGGAAAAGTC 766
| |||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 793 CCGTACAAGCTAAGTCCAAGGAAACTCAAGAAGCTGAGCTTAAGATGCTAAGGAAGAGTC 852
Query 767 TGAACTTCAAAGCCACGCCAATGCCTACCTTCTATCAAGAACCCCAGTTACCTAAAACAG 826
|||||||||||||||| || ||||||||||||||||||||||| ||| ||||||||||||
Sbjct 853 TGAACTTCAAAGCCACACCTATGCCTACCTTCTATCAAGAACCTCAGCTACCTAAAACAG 912
Query 827 AGTTAAAGAAGATACCAACGACAAGACCAAAATCTCCAAAACTCGGGCGGAAGAAGACTG 886
|||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct 913 AGTTAAAGAAGATAGCGATAACAAGACCAAAATCTCCAAAACTCGGGCGGAAGAAGACCA 972
Query 887 ACTC-CGGAGCAGATTCTGAAGAAGCCATTACTATTCAAACCCCTCT-TATTGGTAGGCT 944
| || || |||||||||||||||||||||||||||||||||||||| | |||||||| |
Sbjct 973 ATTCTCG-AGCAGATTCTGAAGAAGCCATTACTATTCAAACCCCTCGCT-TTGGTAGGTT 1030
Query 945 GAGCTTAGATGAGAGAGCTCCT---G-T--C--G-TCA---AAGGAAGTGTTCCTGTTGA 992
|||||||||||||| | ||||| | | | | | |||||||||| || | |||
Sbjct 1031 GAGCTTAGATGAGAAAACTCCTAAAGATAACCCGGTTGTTGAAGGAAGTGTACCCGGTGA 1090
Query 993 GACCAAGAAGCCACCAATGCGGAAGTCACTTCCCAGGTTGCCTTCCGAAAAGACAAGTCT 1052
|||||||||||||||| |||| ||||||||||||||||||||||| |||||||||| |||
Sbjct 1091 GACCAAGAAGCCACCAGTGCGCAAGTCACTTCCCAGGTTGCCTTCAGAAAAGACAAATCT 1150
Query 1053 GTCGAACGGGAAGGTGGCTCCAGCAAAAGCTGTGACAGCCTCAACAAAGACAAAACCCGA 1112
||| ||||||||||||||||||||||||||||| ||||||||||||||| |||| | ||
Sbjct 1151 GTCCAACGGGAAGGTGGCTCCAGCAAAAGCTGTAACAGCCTCAACAAAGGCAAAGTCGGA 1210
Query 1113 AAGAAAGAAACCAGATAAAGATGGGGATGCCCTAAGCCAGTCAAGTCCTGTAGGCGACAA 1172
||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct 1211 AAGAAAGAAACCAGATAAAGATGTGGATGACCTAAGCCAGTCAAGTCCTGTAGACGACAA 1270
Query 1173 TGCTGACCCAGAAGATTCAAAAGAACAAGCTCCAAGAGTGAATGAAGACAGAAACGAATC 1232
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1271 TGCTGACCCAGAAGATTCACAAGAACAAGCTCCAAGAGTGAATGAAGACAGAAACGAATC 1330
Query 1233 TCACATGGTAGTGGAAGTGGTTGCGGTTGAACCTTAAAACCTACGGTACGATTCATGAAT 1292
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 1331 TCACATGGTAGTGGAAGTGGTTGCGGTTGAGCCTTAAAACCTACGGTATGATTCATGTAC 1390
Query 1293 TAGTTAAGGAGCGAAAAAGAAACAGT-----G------TGATAAATGGATGAAATCAAAC 1341
||||||||||||||||||| |||||| | ||| ||||||||||||||||||
Sbjct 1391 TAGTTAAGGAGCGAAAAAGGAACAGTAACAAGAAACAGTGAAAAATGGATGAAATCAAAC 1450
Query 1342 TGTTTAATCAGAAGATGGACAAA--GAGTGAAAGAAAGAGATGCAAATTTGATGCTGTGC 1399
||||||||||||||||||||||| |||||||||| ||||||||||| |||||| |||||
Sbjct 1451 TGTTTAATCAGAAGATGGACAAAAAGAGTGAAAGACAGAGATGCAAAATTGATGGTGTGC 1510
Query 1400 TTTACTTCACAAGGTTGCTTGCTGCTTCTATATTTCATTCGTGAGAGCTTCAATTGTGTT 1459
| | ||||||||||||| || |||| |||||| ||||||||||||||| ||
Sbjct 1511 T---C--CACAAGGTTGCTT-CT------ATATGTCATTCATGAGAGCTTCAATTGCGTC 1558
Query 1460 GCATGATGTT-GGATCGTAATGCTTAAGTTGTGTTTGGTTGTTTGTCGTAAAGATCTGTT 1518
|||||||||| || ||||||||||||| || ||||||||| | ||||| ||||||||||
Sbjct 1559 GCATGATGTTTGG-TCGTAATGCTTAAATTCTGTTTGGTT-T--GTCGTCAAGATCTGTT 1614
Query 1519 TTTTC 1523
|||||
Sbjct 1615 TTTTC 1619
> AT4G32330.1 | Symbols: | TPX2 (targeting protein for Xklp2)
protein family | chr4:15608912-15612285 FORWARD LENGTH=1938
Length=1938
Score = 486 bits (263), Expect = 2e-136
Identities = 519/637 (81%), Gaps = 39/637 (6%)
Strand=Plus/Plus
Query 348 AGATGGGAAAGTGGTGGCATCAAATGGTTCGGTTGCTCCAAACGTACCTCCCGTAAAGT- 406
||||| ||||||| |||||||||||||| |||||||| || |||| | ||| |
Sbjct 548 AGATGCTAAAGTGGCAGCATCAAATGGTTCTGTTGCTCCTAATGTACAGACAACAAA-TC 606
Query 407 CTCCTAAGAGCAAATCGCTCAATGTTAGAGAGGCTCATGTCACGAAGCATGGGAAGAATG 466
||| |||||||||||| |||||| ||||||| || ||||| ||||| |||||| |||
Sbjct 607 CTCTTAAGAGCAAATCATTCAATGGGCGAGAGGCACAAGTCACAAAGCAAGGGAAGCATG 666
Query 467 ACTCTACACCAGCTG-AAGCGAC-CA--GGGACAA-GCCAAAACTGA-TGGCAACAAGGA 520
||||| |||| |||| ||||| | | |||| || | ||| | | | ||| || ||
Sbjct 667 ACTCTGCACCTGCTGAAAGCG-CTGATGGGGAGAAGGTGAAACCAAAGTCTCAA-AA-GA 723
Query 521 AACAAGTCAATGATACATCTGAAGATGATACGCAGTC-TCCAA-A---AG-AAG-A-A-G 571
|||||| | |||| ||||||||||||||||| ||||| || || | | ||| | | |
Sbjct 724 AACAAGCCCATGAGACATCTGAAGATGATACTCAGTCTTCTAATAGTCCGAAAGCAGACG 783
Query 572 ATGGCAAACCTCGTCGAGCTAGTGCACTTCCAAATTATGGATTCAGTTTTAGATGTGACC 631
|||| ||||||||| || | |||||||||||||||||||||||||||| | ||||||||
Sbjct 784 ATGGAAAACCTCGTAAAGTTGGTGCACTTCCAAATTATGGATTCAGTTTCAAATGTGACC 843
Query 632 AACGAGCTGAAAAAAGAAGAGAGTTCTAT-TCAAAGCTTGAGGAAAAAA-TCCATGCGAA 689
|||| |||||||| |||| |||||||||| | || ||||||||| || | || |||| ||
Sbjct 844 AACGGGCTGAAAAGAGAAAAGAGTTCTATGTTAA-GCTTGAGGAGAAGACTC-ATGCAAA 901
Query 690 AGAAGAGGAAAAGAATA-C-TGTACAAGCCAAGTCCAAGGAAACCCAAGAAGCTGAGCTT 747
||||||||||| |||| | || |||||||||||||||||||| |||||||||||||||
Sbjct 902 AGAAGAGGAAATTAATAGCATG--CAAGCCAAGTCCAAGGAAACACAAGAAGCTGAGCTT 959
Query 748 AAGATGCTAAGGAAAAGTCTGAACTTCAAAGCCACGCCAATGCCTACCTTCTATCAAGAA 807
| |||||||||||| ||| |||||||||||||||| || ||||||| ||| |||||||||
Sbjct 960 AGGATGCTAAGGAAGAGTTTGAACTTCAAAGCCACACCTATGCCTAGCTTTTATCAAGAA 1019
Query 808 CCCCAGTTACCTAAAACAGAGTTAAAGAAGATACCAACGACAAGACCAAAATCTCCAAAA 867
|| ||| ||||||||||||||||||||||||||| | || ||||||||||||||||||
Sbjct 1020 CCTCAGCCGCCTAAAACAGAGTTAAAGAAGATACCACCAACGAGACCAAAATCTCCAAAA 1079
Query 868 CTCGGGCGGAAGAAGACTGACTCC-GGAGCAGATTCTGAAGAAGCCATTACTATTCAAAC 926
|||||||| |||||||||| || | |||||||||||||||||| | || |||||
Sbjct 1080 CTCGGGCGAAAGAAGACTG-CTTCTGGAGCAGATTCTGAAGAA---A---CT---CAAAC 1129
Query 927 CCCTCTTATTGGTAGGCTGAGCTTAGATGAGAGAGCT 963
||||| |||||||||| ||| ||||||||||||||
Sbjct 1130 CCCTCGCCTTGGTAGGCTAAGCCTAGATGAGAGAGCT 1166
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76104026220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5