BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481400
Length=2714
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25490.1 | Symbols: EBF1, FBL6 | EIN3-binding F box protein ... 4135 0.0
> AT2G25490.1 | Symbols: EBF1, FBL6 | EIN3-binding F box protein
1 | chr2:10847375-10850532 REVERSE LENGTH=2787
Length=2787
Score = 4135 bits (2239), Expect = 0.0
Identities = 2578/2739 (94%), Gaps = 34/2739 (1%)
Strand=Plus/Plus
Query 1 tttttttttGCCCTATCCATAGGGTTTTCTTCTCTCGTCTCGCTCTTTGATCTTCATGTG 60
|||||||||||||||||||||||||||||||| ||| ||| ||| | ||||||||||||
Sbjct 55 TTTTTTTTTGCCCTATCCATAGGGTTTTCTTCGCTC-TCTATCTCCTCGATCTTCATGTG 113
Query 61 CATCTCTCTCTTTGCTATAATCGGAGCTAATTTGTTTGTTTTCTTCTTAATCGTCGTCAG 120
|||||||||||||| ||||||||||||||||| ||| ||||||||||| ||| ||||| |
Sbjct 114 CATCTCTCTCTTTGGTATAATCGGAGCTAATTCGTTCGTTTTCTTCTTCATCTTCGTCGG 173
Query 121 ATCTTTCTTTTTTGCTCTTTCCCACTGGTTTTCGCTTGAGAAATCAAGCGTTTTCGTTTT 180
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 174 ATCTCTCTTTTTTGCTCTTTCCCACGGGTTTTCGCTTGAGAAATCAAGCGTTTTCGTTTT 233
Query 181 TCCTGGGAGTTTTGAGCTCAAATCATGTCTCAGATCTATAGTTTCGCTGGTGAAAATGAT 240
||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||
Sbjct 234 TCCTGGGAGTTTTGAGCTCAAATCATGTCTCAGATCTTTAGTTTTGCCGGTGAAAATGAT 293
Query 241 TTTTACCGTCGCGGCGCAATATACCCAAACCCGAAGGATGCTAGTCTTTTGTTGTCGCTT 300
||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 294 TTTTACCGTCGTGGCGCAATATACCCAAACCCAAAGGATGCTAGTCTTTTGTTATCGCTT 353
Query 301 GGTAGTTTCG-TGGATGTCTATTTCCCTCCTAGTAAGAGATCGCGTGTCGTTGCACCTAC 359
|||||||||| | ||||| ||||||||||| || |||||||| ||||| |||||||||||
Sbjct 354 GGTAGTTTCGCT-GATGTTTATTTCCCTCCAAGCAAGAGATCACGTGTTGTTGCACCTAC 412
Query 360 GGTCTTCAGTGGTTTCGAGAAAAAGCCAGTTTCCATTGATGTGCTTCCAGATGAGTGCCT 419
| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 413 GATCTTCAGTGCTTTCGAGAAAAAGCCAGTTTCCATTGATGTGCTACCAGATGAGTGTCT 472
Query 420 TTTTGAGATCTTTAGGCGGTTGCCTGGACCGCAAGAGAGGAGTGCTTGCGCTTTTGTCTC 479
|||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||
Sbjct 473 TTTTGAGATCTTTAGGCGTTTGTCTGGACCACAAGAGAGGAGTGCTTGCGCTTTTGTCTC 532
Query 480 GAAACATTGGCTTACGCTTGTGAGTAGTATCCGGCAAACGGAGCTTGATGTTTCTTCCAA 539
||||| |||||||||||||| ||||| ||||| |||| |||| |||||||| |||||||
Sbjct 533 CAAACAGTGGCTTACGCTTGTAAGTAGCATCCGTCAAAAGGAGATTGATGTTCCTTCCAA 592
Query 540 CAAAACTGAAGATGGTGATGATTGTGAAGGGTGTTTGTCTAGGAGCTTAGATGGCAAGAA 599
| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 593 GATAACTGAAGATGGTGATGATTGTGAAGGGTGTTTGTCTAGGAGCTTAGATGGGAAGAA 652
Query 600 GGCAACAGATGTTAGACTAGCTGCAATTGCTGTTGGGACAGCTGGTCGTGGGGGACTTGG 659
|||||||||||||||| | || |||||||||||||| || ||||||||||||||||||||
Sbjct 653 GGCAACAGATGTTAGATTGGCAGCAATTGCTGTTGGAACTGCTGGTCGTGGGGGACTTGG 712
Query 660 AAAACTGTCTATTCGGGGAAGCAGTTCTGGTAGCAAGGTTTCAGATCTTGGTCTTAGGTC 719
|||| |||| ||||| || |||| |||| || || |||||||||||||||||| ||||
Sbjct 713 AAAATTGTCGATTCGAGGTAGCAACTCTGCTA--AA-GTTTCAGATCTTGGTCTTCGGTC 769
Query 720 AATTGGTCGGAGCTGCCCTTCT-TTGGCGTCTCTTTCTCTATGGAACCTTTCTACCATTA 778
|||||||| |||||||||||| | || ||||||||| || |||||| ||||||||||||
Sbjct 770 TATTGGTCGTAGCTGCCCTTCTCTCGG-GTCTCTTTCACTGTGGAACGTTTCTACCATTA 828
Query 779 CTGACAATGGCCTCTTGGAGATTGCTGAGGGTTGTCCTCAACTTGAGAAGCTTGACCTGA 838
|||||||||| || ||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 829 CTGACAATGGACTTTTGGAGATTGCTGAGGGTTGTGCTCAACTTGAGAAGCTTGAGCTGA 888
Query 839 ACCGATGCTCTACAATCACTGACAAGGGTTTGGTTGCTATTGCTAAGAGCTGCCCTAACT 898
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 889 ACCGCTGCTCTACAATCACTGACAAGGGTTTGGTAGCTATTGCTAAGAGCTGCCCCAACT 948
Query 899 TGAGTGAGCTGACATTGGAGGCTTGTTCAAGTATTGGAGATGAGGGTCTGCAAGCCATTG 958
||| ||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||
Sbjct 949 TGACTGAGCTGACATTGGAGGCTTGTTCAAGAATTGGAGATGAGGGTTTGCTAGCCATTG 1008
Query 959 CACGATCCTGCTGCAAGCTGAAGTCAGTATCGATCAAGAACTGTCCTCTTGTCAGGGATC 1018
|| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1009 CAAGATCCTGCTCCAAGCTGAAGTCAGTCTCGATCAAGAACTGTCCTCTTGTCAGGGATC 1068
Query 1019 AAGGAATCGCCTCTCTACTGTCTAACACCACATGTT-CTCTGGCAAAACTTAAGCTTCAG 1077
||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||
Sbjct 1069 AAGGAATCGCCTCTCTACTGTCTAACACCACCTGTTCCT-TGGCAAAACTTAAGCTTCAG 1127
Query 1078 ATGCTGAATGTCACTGATGTGTCTCTGGCTGTTGTGGGTCATTACGGCTTGTCGATCACT 1137
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1128 ATGCTGAATGTCACTGATGTGTCTCTTGCTGTTGTGGGTCATTACGGCTTGTCGATCACT 1187
Query 1138 GATCTTGTACTCGCTGGATTATCACACGTGAGCGAGAAGGGATTCTGGGTCATGGGAAAT 1197
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 GATCTTGTGCTCGCTGGATTATCACACGTGAGCGAGAAGGGATTCTGGGTCATGGGAAAT 1247
Query 1198 GGTGTCGGGCTTCAAAAATTAAACTCTCTGACCATCACAGCCTGCCAGGGAGTGACTGAC 1257
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1248 GGTGTCGGGCTGCAAAAATTAAACTCTCTGACCATCACAGCCTGCCAAGGAGTGACTGAC 1307
Query 1258 ACGGGGCTTGAATCTGTTGGAAAGGGCTGCCCGAACATGAAAAAGGCGATCATCAGTAAA 1317
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 ATGGGGCTTGAATCTGTTGGAAAGGGCTGCCCGAACATGAAAAAGGCGATCATCAGTAAA 1367
Query 1318 TCCCCTTTGTTATCCGACAATGGGTTGGTCTCTTTTGCAAAAGCTTGTTTATCACTTGAG 1377
|||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 1368 TCCCCTTTGTTATCTGACAACGGGTTGGTCTCTTTTGCAAAAGCTTCTTTATCACTTGAG 1427
Query 1378 AGTCTTCAGCTTGAAGAATGCCACAGAGTTACCCAATTTGGGTTTTTTGGTTCCCTTTTG 1437
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1428 AGTCTTCAGCTTGAAGAATGCCACAGGGTTACCCAATTTGGGTTTTTTGGTTCCCTTTTG 1487
Query 1438 AACTGTGGTGAAAAGTTGAAGGCTTTCTCTCTGGTGAACTGTTTGAGCATTAGAGATCTC 1497
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1488 AACTGTGGTGAAAAGTTGAAGGCTTTCTCTCTGGTGAACTGTTTGAGTATTAGAGATCTC 1547
Query 1498 ACCACAGGATTGCCTGCTTCATCTCATTGCAGCGCTCTGCGCTCTTTGTCTATTCGTAAC 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1548 ACCACAGGATTGCCTGCTTCATCTCATTGCAGCGCTCTGCGCTCTTTGTCTATTCGTAAC 1607
Query 1558 TGTCCTGGCTTTGGTGATGCAAATCTTGCAGCCATCGGGAAGTTGTGCCCTCAGCTCGAG 1617
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1608 TGCCCTGGCTTTGGTGATGCAAATCTTGCAGCCATCGGGAAGTTGTGCCCTCAGCTCGAG 1667
Query 1618 GATATTGATCTGTGTGGGCTCAAGGGGATAACAGAGTCTGGTTTCCTACATCTAATTCAG 1677
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1668 GATATTGATCTGTGTGGGCTCAAGGGGATAACAGAGTCTGGTTTCCTACATCTGATTCAG 1727
Query 1678 AGCTCTCTTGTGAAGGTCAACTTCAGTGGTTGTTCCAACTTGACCGACAGAGTGATCTCT 1737
||||||||||||||| |||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 1728 AGCTCTCTTGTGAAGATCAACTTCAGTGGTTGTTCCAATTTGACTGATAGAGTGATCTCT 1787
Query 1738 GCCATCACTGCTCGTAACGGGTGGACTCTCGAAGTCTTAAACATCGATGGATGTTCCAAT 1797
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1788 GCCATCACTGCTCGTAACGGGTGGACTCTTGAAGTCTTAAACATCGATGGATGTTCCAAT 1847
Query 1798 ATCACTGACGCCAGCCTGGTCTCCATTGCAGCAAACTGCCAGATTCTCAGTGATTTGGAT 1857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1848 ATCACTGACGCCAGCCTGGTCTCCATTGCAGCAAACTGCCAGATTCTCAGTGATTTGGAT 1907
Query 1858 CTTTCGAAATGCGCAATCTCAGATTCAGGGGTTCATGCATTGGCTTCCTCTGATAAGCTC 1917
||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||
Sbjct 1908 ATTTCGAAATGCGCAATCTCAGATTCAGGGATTCAAGCATTGGCCTCCTCTGATAAGCTC 1967
Query 1918 AAACTGCAGATCCTTTCAGTTGCAGGTTGCTCTATGGTGACAGACAAGAGCATGCCAGCC 1977
|||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1968 AAACTGCAGATCCTATCAGTTGCAGGTTGCTCTATGGTTACAGACAAGAGCTTGCCAGCC 2027
Query 1978 ATCGTCGGGTTGGGTTCCACTTTATTGGGATTAAACCTCCAACAGTGTCGATCCATCTCC 2037
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 2028 ATCGTCGGGTTGGGTTCCACTCTATTGGGATTAAACCTCCAACAGTGTCGATCCATTTCC 2087
Query 2038 AATTCCACTGTCGACTTCTTAGTCGAGCGCCTTTACAAATGTGACATCCTCTCCTGATCA 2097
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2088 AATTCCACTGTCGACTTCTTAGTCGAGCGTCTTTACAAATGTGACATCCTCTCCTGATCA 2147
Query 2098 TCAATTCCACTATCGACCTCTCCACCTATAATGTAAGGTATTTTAGTCCGTCCATGTCCG 2157
|||||||||| ||||||||||||| |||||||||||||||||||||||||||| || ||
Sbjct 2148 ACAATTCCACTGTCGACCTCTCCACTTATAATGTAAGGTATTTTAGTCCGTCCAAGTTCG 2207
Query 2158 TTTATCAAGTGTCAACTGTTTTTCAGGCTCTGTGATCTACGTGTCCCTC-C-C--Gg-t- 2211
|||||||||| |||||| ||||||||||||||||||||||| ||||||| | | || |
Sbjct 2208 TTTATCAAGTCTCAACTCTTTTTCAGGCTCTGTGATCTACGCGTCCCTCTCGCTAGGCTC 2267
Query 2212 --t------tt--ccttcttttttccaagcagttcgcttccggtttctttttttccagtc 2261
| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2268 GGTACCCGGTTTTCCTTCTTTTTTCCAAGCAGTTCGCTTCCGGTTTCTTTTTTTCCAGTC 2327
Query 2262 aatggtttttttgcggggtttcctttttATCAAGGGAAACTCTAGCTTATCTCGAAATCG 2321
|||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 2328 AATGGTTTTTTTGCAGGGTTTCCTTTTTATCAAGG-AAACTCTAACTTATCTCGAAATCG 2386
Query 2322 GAAGGTTGTGCGTTGCTTGAGAATATATTTACCGGGTATCCGAGATTTTAGGGTTTATCA 2381
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2387 GAAGGTTGTGTGTTGCTTGAGAATATATTTACCGGGTAGACGAGATTTTAGGGTTTATCA 2446
Query 2382 TCTCCTGTTTCTTGCT--TT-GGTGTCTTTTACGAGCCAGTTATCTATTTTATGCGCGTC 2438
|||||||||||||||| || |||||||||||||||||||||||||||||||| | ||||
Sbjct 2447 TCTCCTGTTTCTTGCTGCTTTGGTGTCTTTTACGAGCCAGTTATCTATTTTATCCCCGTC 2506
Query 2439 GTTTGTCTTTGTTTGGTTTGGTTTTCCTCGGAAGGGTCTTGTATGATTTGTACGGGTTTA 2498
||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||| |
Sbjct 2507 GTTTGTCTTTGTTGGGTTTGGTTTTCCTCGGAAGGGTTTTGTATGATATGTACGGGTTCA 2566
Query 2499 GGTTTTGTTCAGGCCTTGGTTCTCTCAGAGGTTTGCTCTGGCTTTTGTTGCAACAACTCT 2558
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2567 GGTTTGGTTCAGGCCTTGGTTCTCTCAGAGGTTTGCTCTGGCTTTTGTTGCAACAACTCT 2626
Query 2559 ATTAAAGAGttttttgtg--ttattttttt-gccagagccctcgtttttttttCCAGGCA 2615
||||||||||||||| || || ||||||| ||||||||||||||||||||| |||||||
Sbjct 2627 ATTAAAGAGTTTTTTTTGGGTTTTTTTTTTTGCCAGAGCCCTCGTTTTTTTT-CCAGGCA 2685
Query 2616 CTGTATTACAATCTGTATAAACACTGTACTAAATTATGTAATGCCCTTTGGGATGGTTTA 2675
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2686 CTGTATTACAATCTGTATGAACACTGTACTAAATTATGTAATGCCCTTTGGGATGGTTTA 2745
Query 2676 ATGAGTATTGAATAAAATTCTCATTTCGTTGTATAATAC 2714
||||||||||||||||||||||||||||||||||| |||
Sbjct 2746 ATGAGTATTGAATAAAATTCTCATTTCGTTGTATATTAC 2784
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 134798575841
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5